Strain Fitness in Sphingobium sp. HT1-2 around GFF5081

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,073,860	+		GFF5079	0.66	-1.3
5,073,861	-		GFF5079	0.66	-1.2
5,073,861	-		GFF5079	0.66	-1.7
5,073,863	+		GFF5079	0.66	-0.9
5,073,865	+		GFF5079	0.66	-1.2
5,073,866	-		GFF5079	0.66	+1.0
5,073,866	-		GFF5079	0.66	+0.4
5,073,866	-		GFF5079	0.66	-1.3
5,073,866	-		GFF5079	0.66	-0.1
5,073,866	-		GFF5079	0.66	+0.3
5,073,866	-		GFF5079	0.66	+0.4
5,073,866	-		GFF5079	0.66	-1.4
5,073,871	-		GFF5079	0.67	+0.6
5,073,873	-		GFF5079	0.67	-0.5
5,073,879	+		GFF5079	0.67	-0.5
5,073,883	-		GFF5079	0.68	-0.7
5,073,887	-		GFF5079	0.68	+1.6
5,073,887	-		GFF5079	0.68	+0.5
5,073,909	+		GFF5079	0.70	-0.3
5,073,927	-		GFF5079	0.72	+0.5
5,073,937	-		GFF5079	0.72	-0.5
5,073,937	-		GFF5079	0.72	-0.6
5,073,951	-		GFF5079	0.74	-1.6
5,073,951	-		GFF5079	0.74	+0.8
5,074,040	+		GFF5079	0.81	-1.8
5,074,073	-		GFF5079	0.84	-1.3
5,074,187	+				-1.0
5,074,211	-				-2.0
5,074,244	-				+0.7
5,074,272	+				-0.7
5,074,273	+				-0.5
5,074,280	-				-2.6
5,074,280	-				-1.7
5,074,280	-				-0.1
5,074,290	-				-1.7
5,074,292	+				-0.9
5,074,292	+				-1.2
5,074,300	-				-1.3
5,074,300	-				-1.4
5,074,301	+				-2.1
5,074,301	+				-2.1
5,074,301	+				-0.8
5,074,304	-				-0.3
5,074,309	-				-1.9
5,074,309	-				-1.6
5,074,309	-				-0.3
5,074,309	-				-1.4
5,074,314	-				-1.4
5,074,316	+				-0.6
5,074,316	+				-1.3
5,074,324	-		GFF5080	0.10	-1.1
5,074,324	-		GFF5080	0.10	-1.6
5,074,355	+		GFF5080	0.15	-0.4
5,074,374	+		GFF5080	0.19	-1.4
5,074,374	+		GFF5080	0.19	-1.2
5,074,374	+		GFF5080	0.19	+0.3
5,074,382	-		GFF5080	0.20	+0.0
5,074,418	+		GFF5080	0.26	-0.7
5,074,418	+		GFF5080	0.26	+0.5
5,074,418	+		GFF5080	0.26	-1.4
5,074,418	+		GFF5080	0.26	-1.0
5,074,418	+		GFF5080	0.26	+0.2
5,074,418	+		GFF5080	0.26	-0.1
5,074,418	+		GFF5080	0.26	-1.6
5,074,420	-		GFF5080	0.26	-0.6
5,074,420	-		GFF5080	0.26	+0.3
5,074,423	+		GFF5080	0.27	-0.3
5,074,423	+		GFF5080	0.27	-0.4
5,074,423	+		GFF5080	0.27	+0.6
5,074,426	-		GFF5080	0.27	-0.4
5,074,426	-		GFF5080	0.27	-0.7
5,074,426	-		GFF5080	0.27	-0.3
5,074,426	-		GFF5080	0.27	-1.8
5,074,426	-		GFF5080	0.27	-0.5
5,074,431	-		GFF5080	0.28	+0.4
5,074,482	-		GFF5080	0.37	-0.6
5,074,486	-		GFF5080	0.37	-0.1
5,074,486	-		GFF5080	0.37	-1.0
5,074,486	-		GFF5080	0.37	-0.3
5,074,493	+		GFF5080	0.39	-0.3
5,074,493	+		GFF5080	0.39	-3.7
5,074,493	+		GFF5080	0.39	-0.2
5,074,493	+		GFF5080	0.39	-0.8
5,074,493	+		GFF5080	0.39	-2.4
5,074,493	+		GFF5080	0.39	-2.4
5,074,493	+		GFF5080	0.39	-2.6
5,074,501	-		GFF5080	0.40	-0.4
5,074,501	-		GFF5080	0.40	-1.3
5,074,501	-		GFF5080	0.40	-1.8
5,074,501	-		GFF5080	0.40	-0.3
5,074,501	-		GFF5080	0.40	-1.1
5,074,516	-		GFF5080	0.42	+1.2
5,074,516	-		GFF5080	0.42	-2.6
5,074,518	+		GFF5080	0.43	-2.5
5,074,542	+		GFF5080	0.47	-2.9
5,074,552	-		GFF5080	0.48	-0.2
5,074,584	+		GFF5080	0.54	-2.5
5,074,606	+		GFF5080	0.58	-0.9
5,074,606	+		GFF5080	0.58	+0.7
5,074,646	-		GFF5080	0.64	-2.5
5,074,647	+		GFF5080	0.64	-0.5
5,075,009	+				-0.8
5,075,009	-				-1.1
5,075,017	-				-0.7
5,075,017	-				-0.7
5,075,017	-				-1.3
5,075,019	-				-0.7
5,075,021	+				-0.8
5,075,021	+				-1.8
5,075,023	+				-0.9
5,075,023	+				+0.4
5,075,029	+				-0.2
5,075,029	-				-0.4
5,075,029	-				-2.0
5,075,031	-				-1.1
5,075,039	+				+1.1
5,075,040	+				-1.0
5,075,042	+				-0.2
5,075,047	+				-1.5
5,075,052	+				+1.0
5,075,055	-				-2.0
5,075,063	-				+0.7
5,075,087	-				-0.1
5,075,095	+				-0.7
5,075,103	-				-2.6
5,075,103	-				+0.9
5,075,109	+				-0.3
5,075,118	-				-0.8
5,075,146	+				+0.0
5,075,147	+				-1.1
5,075,180	-				-0.3
5,075,190	+				-1.2
5,075,193	-				-0.8
5,075,198	-				-1.6
5,075,240	+				-1.6
5,075,254	+				-1.6
5,075,254	+				-1.4
5,075,254	+				-1.4
5,075,254	+				-0.3
5,075,254	+				-0.2
5,075,254	+				-0.8
5,075,257	-				-1.0
5,075,262	-				-0.6
5,075,262	-				-0.8
5,075,262	-				-1.9
5,075,262	-				+0.0
5,075,262	-				-0.5
5,075,269	-				-1.0
5,075,270	-				-0.0
5,075,275	-				-0.6
5,075,286	-				-0.5
5,075,307	+		GFF5082	0.12	-1.8
5,075,307	+		GFF5082	0.12	-2.1
5,075,315	-		GFF5082	0.13	-0.1
5,075,353	+		GFF5082	0.18	+0.3
5,075,353	-		GFF5082	0.18	-1.4
5,075,356	+		GFF5082	0.18	-0.7
5,075,363	-		GFF5082	0.19	+0.0
5,075,363	-		GFF5082	0.19	-0.2
5,075,393	+		GFF5082	0.23	+0.5
5,075,409	-		GFF5082	0.25	-0.9
5,075,409	-		GFF5082	0.25	-2.1
5,075,413	+		GFF5082	0.26	-3.5
5,075,419	+		GFF5082	0.27	-0.4
5,075,419	+		GFF5082	0.27	-2.8
5,075,419	+		GFF5082	0.27	-0.6
5,075,419	+		GFF5082	0.27	-0.6
5,075,419	+		GFF5082	0.27	-1.0
5,075,424	+		GFF5082	0.27	+0.9
5,075,427	-		GFF5082	0.28	-1.0
5,075,427	-		GFF5082	0.28	-1.1
5,075,427	-		GFF5082	0.28	-0.2
5,075,432	-		GFF5082	0.28	-1.7
5,075,432	-		GFF5082	0.28	-0.3
5,075,432	-		GFF5082	0.28	-0.7
5,075,432	-		GFF5082	0.28	-0.9
5,075,456	-		GFF5082	0.31	-0.2
5,075,475	+		GFF5082	0.34	-3.2
5,075,484	+		GFF5082	0.35	-2.9
5,075,484	+		GFF5082	0.35	+0.7
5,075,484	+		GFF5082	0.35	+0.1
5,075,492	-		GFF5082	0.36	-0.8
5,075,492	-		GFF5082	0.36	-0.7
5,075,492	-		GFF5082	0.36	-2.6
5,075,494	+		GFF5082	0.36	-0.9
5,075,494	+		GFF5082	0.36	-1.1
5,075,494	+		GFF5082	0.36	+0.6
5,075,499	+		GFF5082	0.37	-1.1
5,075,502	-		GFF5082	0.37	-1.7
5,075,502	-		GFF5082	0.37	-0.2
5,075,507	-		GFF5082	0.38	-0.5
5,075,509	+		GFF5082	0.38	-1.0
5,075,514	+		GFF5082	0.39	+0.2
5,075,514	+		GFF5082	0.39	-1.2
5,075,517	-		GFF5082	0.39	-0.1
5,075,531	-		GFF5082	0.41	-0.9
5,075,551	+		GFF5082	0.44	-1.6
5,075,551	+		GFF5082	0.44	-0.6
5,075,551	+		GFF5082	0.44	-0.0
5,075,551	+		GFF5082	0.44	-0.8
5,075,551	+		GFF5082	0.44	-1.6
5,075,551	+		GFF5082	0.44	-1.2
5,075,557	+		GFF5082	0.45	-0.1
5,075,559	-		GFF5082	0.45	-2.2
5,075,559	-		GFF5082	0.45	-0.2
5,075,559	-		GFF5082	0.45	-0.9
5,075,559	-		GFF5082	0.45	-1.0
5,075,559	-		GFF5082	0.45	-1.0
5,075,573	+		GFF5082	0.47	-0.9
5,075,581	-		GFF5082	0.48	-2.2
5,075,581	-		GFF5082	0.48	-0.9
5,075,589	+		GFF5082	0.49	-0.6
5,075,595	+		GFF5082	0.50	+1.3
5,075,601	+		GFF5082	0.50	-0.5
5,075,601	+		GFF5082	0.50	-0.1
5,075,601	+		GFF5082	0.50	+0.7
5,075,603	-		GFF5082	0.51	-0.7
5,075,608	+		GFF5082	0.51	-1.5
5,075,609	-		GFF5082	0.51	+0.3
5,075,609	-		GFF5082	0.51	-0.1
5,075,609	-		GFF5082	0.51	-0.6
5,075,609	-		GFF5082	0.51	-1.3
5,075,609	-		GFF5082	0.51	+0.1
5,075,609	-		GFF5082	0.51	+0.3
5,075,618	-		GFF5082	0.53	-0.9
5,075,620	+		GFF5082	0.53	-0.7
5,075,628	+		GFF5082	0.54	-3.0
5,075,628	-		GFF5082	0.54	-0.3
5,075,640	+		GFF5082	0.55	-1.0
5,075,647	+		GFF5082	0.56	-0.4
5,075,650	+		GFF5082	0.57	-2.6
5,075,650	+		GFF5082	0.57	-0.4
5,075,650	+		GFF5082	0.57	-1.3
5,075,654	+		GFF5082	0.57	-0.1
5,075,658	-		GFF5082	0.58	-0.3
5,075,660	+		GFF5082	0.58	-0.6
5,075,660	+		GFF5082	0.58	-1.1
5,075,663	-		GFF5082	0.58	+0.7
5,075,663	-		GFF5082	0.58	-1.7
5,075,665	+		GFF5082	0.59	+0.2
5,075,676	+		GFF5082	0.60	+1.2
5,075,700	+		GFF5082	0.63	-1.5
5,075,713	+		GFF5082	0.65	-0.9
5,075,735	-		GFF5082	0.68	-1.6
5,075,735	-		GFF5082	0.68	+1.6
5,075,737	+		GFF5082	0.68	-2.1
5,075,737	+		GFF5082	0.68	-0.4
5,075,737	+		GFF5082	0.68	-0.1
5,075,745	-		GFF5082	0.69	-2.4
5,075,745	-		GFF5082	0.69	-0.3
5,075,745	-		GFF5082	0.69	-1.0
5,075,759	-		GFF5082	0.71	+0.4
5,075,768	+		GFF5082	0.72	+0.1
5,075,768	+		GFF5082	0.72	+0.0
5,075,781	-		GFF5082	0.74	-0.7
5,075,795	-		GFF5082	0.76	-1.6
5,075,795	-		GFF5082	0.76	-2.9
5,075,802	+		GFF5082	0.77	-3.0
5,075,802	+		GFF5082	0.77	+0.3
5,075,806	+		GFF5082	0.77	-0.6
5,075,810	-		GFF5082	0.78	-0.8
5,075,814	-		GFF5082	0.78	-1.1
5,075,828	+		GFF5082	0.80	+0.1
5,075,831	-		GFF5082	0.80	-1.0
5,075,831	-		GFF5082	0.80	+0.2
5,075,850	+		GFF5082	0.83	-0.8
5,075,858	-		GFF5082	0.84	-0.5
5,075,860	-		GFF5082	0.84	-0.7
5,075,862	+		GFF5082	0.84	-1.3
5,075,862	+		GFF5082	0.84	-2.4
5,075,868	-		GFF5082	0.85	+0.3
5,075,893	-		GFF5082	0.88	-1.6
5,075,898	+		GFF5082	0.89	-0.7
5,075,900	+		GFF5082	0.89	-0.8
5,075,903	+		GFF5082	0.90	-0.6
5,075,906	-				-2.0
5,075,920	+				-0.0
5,075,921	+				-1.7
5,075,928	-				+0.5
5,075,929	-				-0.5