Strain Fitness in Sphingobium sp. HT1-2 around GFF5036

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,030,838	-				+0.0
5,030,847	-				+0.4
5,030,873	+				-1.2
5,030,875	-				-0.1
5,030,881	-				-0.4
5,030,882	-				-0.3
5,030,913	+				+0.9
5,030,931	-				+0.2
5,030,939	-				+0.7
5,030,943	+				-0.9
5,030,966	+		GFF5035	0.11	+0.8
5,030,966	+		GFF5035	0.11	+0.7
5,030,974	-		GFF5035	0.12	-0.6
5,030,974	-		GFF5035	0.12	+0.2
5,030,974	-		GFF5035	0.12	+0.3
5,031,018	+		GFF5035	0.16	+0.4
5,031,031	-		GFF5035	0.17	-2.3
5,031,070	-		GFF5035	0.21	+1.5
5,031,070	-		GFF5035	0.21	-0.0
5,031,078	+		GFF5035	0.22	+0.3
5,031,096	+		GFF5035	0.24	-0.6
5,031,096	+		GFF5035	0.24	-1.4
5,031,096	+		GFF5035	0.24	+0.8
5,031,096	+		GFF5035	0.24	+0.7
5,031,096	+		GFF5035	0.24	+0.8
5,031,096	+		GFF5035	0.24	+1.7
5,031,096	+		GFF5035	0.24	+1.6
5,031,096	+		GFF5035	0.24	+0.3
5,031,096	+		GFF5035	0.24	-0.6
5,031,096	+		GFF5035	0.24	+0.7
5,031,096	+		GFF5035	0.24	+1.2
5,031,104	-		GFF5035	0.25	+0.4
5,031,104	-		GFF5035	0.25	-0.4
5,031,104	-		GFF5035	0.25	+0.8
5,031,104	-		GFF5035	0.25	-0.4
5,031,104	-		GFF5035	0.25	-1.4
5,031,104	-		GFF5035	0.25	-0.5
5,031,104	-		GFF5035	0.25	+0.2
5,031,120	+		GFF5035	0.27	+0.7
5,031,121	-		GFF5035	0.27	+0.6
5,031,121	-		GFF5035	0.27	+0.3
5,031,130	+		GFF5035	0.28	+0.1
5,031,130	+		GFF5035	0.28	+0.9
5,031,132	+		GFF5035	0.28	-0.8
5,031,138	-		GFF5035	0.28	+0.2
5,031,140	+		GFF5035	0.29	+1.1
5,031,140	+		GFF5035	0.29	+0.0
5,031,148	-		GFF5035	0.29	-2.0
5,031,149	+		GFF5035	0.29	+0.2
5,031,150	+		GFF5035	0.30	+0.4
5,031,199	+		GFF5035	0.35	+2.2
5,031,201	+		GFF5035	0.35	+1.2
5,031,204	+		GFF5035	0.35	+0.3
5,031,207	-		GFF5035	0.35	+0.7
5,031,209	+		GFF5035	0.36	-0.3
5,031,229	-		GFF5035	0.38	+0.4
5,031,229	-		GFF5035	0.38	-0.0
5,031,229	-		GFF5035	0.38	+0.8
5,031,249	+		GFF5035	0.40	-0.3
5,031,249	+		GFF5035	0.40	+0.4
5,031,250	+		GFF5035	0.40	+1.1
5,031,250	-		GFF5035	0.40	-1.1
5,031,255	-		GFF5035	0.40	-0.6
5,031,258	+		GFF5035	0.41	-0.8
5,031,258	-		GFF5035	0.41	-0.4
5,031,264	-		GFF5035	0.41	-1.3
5,031,268	-		GFF5035	0.42	+0.2
5,031,269	-		GFF5035	0.42	+0.2
5,031,297	-		GFF5035	0.45	-0.1
5,031,300	+		GFF5035	0.45	-0.6
5,031,316	+		GFF5035	0.46	+1.0
5,031,316	+		GFF5035	0.46	+0.8
5,031,324	-		GFF5035	0.47	-0.0
5,031,324	-		GFF5035	0.47	-0.6
5,031,326	+		GFF5035	0.48	-0.0
5,031,334	-		GFF5035	0.48	+0.8
5,031,334	-		GFF5035	0.48	-0.6
5,031,344	-		GFF5035	0.49	-0.3
5,031,346	+		GFF5035	0.50	+0.5
5,031,393	+		GFF5035	0.54	-1.2
5,031,393	+		GFF5035	0.54	+0.7
5,031,401	-		GFF5035	0.55	-0.1
5,031,416	+		GFF5035	0.57	+0.2
5,031,424	+		GFF5035	0.57	-0.2
5,031,424	+		GFF5035	0.57	+1.1
5,031,424	+		GFF5035	0.57	-0.9
5,031,432	-		GFF5035	0.58	-0.5
5,031,432	-		GFF5035	0.58	+1.4
5,031,432	-		GFF5035	0.58	-0.5
5,031,453	+		GFF5035	0.60	+1.1
5,031,462	-		GFF5035	0.61	-1.8
5,031,470	-		GFF5035	0.62	-0.7
5,031,477	+		GFF5035	0.63	+1.4
5,031,496	+		GFF5035	0.65	+0.2
5,031,518	+		GFF5035	0.67	-0.6
5,031,538	+		GFF5035	0.69	-0.0
5,031,538	+		GFF5035	0.69	-0.2
5,031,543	+		GFF5035	0.70	-0.1
5,031,543	+		GFF5035	0.70	+0.5
5,031,546	-		GFF5035	0.70	+0.8
5,031,546	-		GFF5035	0.70	-1.6
5,031,546	-		GFF5035	0.70	-1.6
5,031,551	-		GFF5035	0.70	-0.9
5,031,553	-		GFF5035	0.71	-0.9
5,031,565	-		GFF5035	0.72	-0.8
5,031,602	+		GFF5035	0.76	-0.0
5,031,602	-		GFF5035	0.76	+1.8
5,031,604	-		GFF5035	0.76	+0.2
5,031,610	-		GFF5035	0.76	+0.7
5,031,610	-		GFF5035	0.76	+0.0
5,031,610	-		GFF5035	0.76	+0.5
5,031,614	-		GFF5035	0.77	-1.8
5,031,614	-		GFF5035	0.77	-0.1
5,031,625	+		GFF5035	0.78	+0.6
5,031,632	+		GFF5035	0.79	+0.7
5,031,633	+		GFF5035	0.79	-2.3
5,031,634	+		GFF5035	0.79	+0.1
5,031,641	-		GFF5035	0.80	+1.3
5,031,666	-		GFF5035	0.82	+0.6
5,031,713	-		GFF5035	0.87	-0.1
5,031,718	+		GFF5035	0.87	+0.3
5,031,718	+		GFF5035	0.87	+1.4
5,031,726	-		GFF5035	0.88	-1.0
5,031,726	-		GFF5035	0.88	+0.1
5,031,736	+		GFF5035	0.89	+0.8
5,031,754	-				+0.9
5,031,755	+				+1.3
5,031,755	+				-0.2
5,031,772	+				+1.0
5,031,779	+				+0.6
5,031,780	-				-1.2
5,031,782	-				-0.8
5,031,782	-				+0.8
5,031,813	-				-1.3
5,031,819	+				-1.8
5,031,827	-				-0.3
5,031,827	-				+1.6
5,031,827	-				+1.0
5,031,827	-				+0.9
5,031,827	-				+1.1
5,031,848	-				-0.1
5,031,848	-				+0.0
5,031,863	+				+0.4
5,031,863	+				-0.1
5,031,863	+				-0.0
5,031,863	+				+1.1
5,031,863	+				+0.4
5,031,863	+				+0.6
5,031,863	+				+0.7
5,031,863	+				+0.1
5,031,863	+				-1.7
5,031,871	-				+0.3
5,031,871	-				+0.1
5,031,871	-				+1.1
5,031,871	-				-0.4
5,031,871	-				-0.6
5,031,871	-				-0.4
5,031,871	-				+0.2
5,031,871	-				+1.2
5,031,871	-				+1.2
5,031,871	-				-2.0
5,031,871	-				-0.2
5,031,871	-				+0.6
5,031,878	+				-1.2
5,031,888	+				+1.1
5,031,888	+				-0.2
5,031,888	+				+0.7
5,031,888	+				+0.6
5,031,888	+				+1.0
5,031,888	+				+0.7
5,031,896	-				+0.2
5,031,896	-				+2.5
5,031,896	-				+0.3
5,031,896	-				+1.8
5,031,896	-				-0.2
5,031,896	-				+0.2
5,031,903	+				+1.5
5,031,906	+				+0.9
5,031,911	+				+1.0
5,031,914	-				-1.8
5,031,940	-				-0.1
5,031,984	+		GFF5036	0.11	+0.4
5,032,007	+		GFF5036	0.13	+1.1
5,032,015	-		GFF5036	0.13	-1.4
5,032,021	-		GFF5036	0.14	-2.3
5,032,022	+		GFF5036	0.14	-0.1
5,032,030	-		GFF5036	0.14	+0.8
5,032,030	-		GFF5036	0.14	+1.6
5,032,035	-		GFF5036	0.15	-0.6
5,032,041	+		GFF5036	0.15	+0.3
5,032,041	+		GFF5036	0.15	+0.1
5,032,046	+		GFF5036	0.15	-0.4
5,032,051	+		GFF5036	0.16	-0.2
5,032,051	+		GFF5036	0.16	+1.1
5,032,051	+		GFF5036	0.16	-0.2
5,032,051	+		GFF5036	0.16	-0.2
5,032,054	-		GFF5036	0.16	-1.2
5,032,056	+		GFF5036	0.16	+0.4
5,032,056	+		GFF5036	0.16	-0.5
5,032,059	-		GFF5036	0.16	+0.7
5,032,059	-		GFF5036	0.16	-1.6
5,032,059	-		GFF5036	0.16	+0.2
5,032,064	-		GFF5036	0.17	-0.0
5,032,071	+		GFF5036	0.17	+0.5
5,032,108	+		GFF5036	0.20	+0.6
5,032,112	-		GFF5036	0.20	+0.0
5,032,115	+		GFF5036	0.20	+0.2
5,032,119	+		GFF5036	0.21	-1.5
5,032,119	+		GFF5036	0.21	+0.2
5,032,127	+		GFF5036	0.21	-0.2
5,032,135	+		GFF5036	0.22	+2.4
5,032,135	+		GFF5036	0.22	+1.2
5,032,135	-		GFF5036	0.22	-0.2
5,032,137	+		GFF5036	0.22	+0.2
5,032,143	-		GFF5036	0.22	-0.6
5,032,143	-		GFF5036	0.22	-0.6
5,032,143	-		GFF5036	0.22	+0.4
5,032,150	-		GFF5036	0.23	+0.2
5,032,158	+		GFF5036	0.23	+0.5
5,032,166	-		GFF5036	0.24	-0.3
5,032,171	-		GFF5036	0.24	+0.6
5,032,171	-		GFF5036	0.24	-0.2
5,032,171	-		GFF5036	0.24	-0.2
5,032,171	-		GFF5036	0.24	-0.7
5,032,184	-		GFF5036	0.25	-0.3
5,032,184	-		GFF5036	0.25	-0.1
5,032,187	+		GFF5036	0.25	+0.6
5,032,187	+		GFF5036	0.25	-0.3
5,032,187	+		GFF5036	0.25	+1.1
5,032,187	+		GFF5036	0.25	+0.1
5,032,187	+		GFF5036	0.25	+0.3
5,032,187	+		GFF5036	0.25	+0.7
5,032,195	-		GFF5036	0.26	-0.4
5,032,195	-		GFF5036	0.26	+0.3
5,032,195	-		GFF5036	0.26	-0.7
5,032,195	-		GFF5036	0.26	-1.2
5,032,195	-		GFF5036	0.26	+1.1
5,032,195	-		GFF5036	0.26	-0.9
5,032,195	-		GFF5036	0.26	+0.5
5,032,209	-		GFF5036	0.27	-0.8
5,032,211	+		GFF5036	0.27	+1.9
5,032,212	-		GFF5036	0.27	-0.8
5,032,219	-		GFF5036	0.28	-2.2
5,032,219	-		GFF5036	0.28	+0.3
5,032,219	-		GFF5036	0.28	-1.2
5,032,227	-		GFF5036	0.28	-0.4
5,032,229	+		GFF5036	0.29	+1.1
5,032,229	+		GFF5036	0.29	+0.5
5,032,246	+		GFF5036	0.30	+0.0
5,032,303	-		GFF5036	0.34	+0.9
5,032,306	+		GFF5036	0.34	+0.7
5,032,314	-		GFF5036	0.35	+1.6
5,032,368	+		GFF5036	0.39	+1.0
5,032,368	+		GFF5036	0.39	-3.2
5,032,376	-		GFF5036	0.39	+0.9
5,032,376	-		GFF5036	0.39	-0.3
5,032,416	+		GFF5036	0.42	-0.8
5,032,416	+		GFF5036	0.42	-2.2
5,032,421	+		GFF5036	0.42	-2.6
5,032,421	+		GFF5036	0.42	+0.6
5,032,424	-		GFF5036	0.43	+0.1
5,032,424	-		GFF5036	0.43	+1.0
5,032,424	-		GFF5036	0.43	-0.7
5,032,426	+		GFF5036	0.43	-0.3
5,032,429	-		GFF5036	0.43	+0.1
5,032,429	-		GFF5036	0.43	-0.4
5,032,434	-		GFF5036	0.43	+0.8
5,032,440	+		GFF5036	0.44	-0.0
5,032,460	-		GFF5036	0.45	+1.2
5,032,467	+		GFF5036	0.46	-0.9
5,032,467	+		GFF5036	0.46	-0.8
5,032,495	+		GFF5036	0.48	-2.3
5,032,495	+		GFF5036	0.48	+0.8
5,032,538	+		GFF5036	0.51	+0.4
5,032,561	-		GFF5036	0.52	+0.1
5,032,562	+		GFF5036	0.52	+0.5
5,032,570	-		GFF5036	0.53	+0.1
5,032,600	+		GFF5036	0.55	+0.9
5,032,600	+		GFF5036	0.55	+1.6
5,032,600	+		GFF5036	0.55	+0.4
5,032,600	+		GFF5036	0.55	-0.3
5,032,608	-		GFF5036	0.56	-1.0
5,032,608	-		GFF5036	0.56	+0.2
5,032,608	-		GFF5036	0.56	+0.2
5,032,618	-		GFF5036	0.57	+0.2
5,032,671	-		GFF5036	0.60	-0.0
5,032,681	+		GFF5036	0.61	+0.1
5,032,681	+		GFF5036	0.61	-0.4
5,032,681	+		GFF5036	0.61	+0.7
5,032,681	+		GFF5036	0.61	+0.6
5,032,689	-		GFF5036	0.62	-1.0
5,032,689	-		GFF5036	0.62	+0.3
5,032,689	-		GFF5036	0.62	+0.4
5,032,701	+		GFF5036	0.62	+0.7
5,032,701	+		GFF5036	0.62	+0.3
5,032,701	+		GFF5036	0.62	+0.2
5,032,701	+		GFF5036	0.62	+0.7
5,032,701	+		GFF5036	0.62	+1.0
5,032,701	+		GFF5036	0.62	+0.2
5,032,701	+		GFF5036	0.62	-0.1
5,032,701	+		GFF5036	0.62	+0.0
5,032,709	-		GFF5036	0.63	+0.1
5,032,709	-		GFF5036	0.63	+1.3
5,032,709	-		GFF5036	0.63	+0.1
5,032,711	+		GFF5036	0.63	-0.7
5,032,711	+		GFF5036	0.63	-1.0
5,032,716	+		GFF5036	0.64	+0.4
5,032,719	-		GFF5036	0.64	-0.4
5,032,719	-		GFF5036	0.64	+1.2
5,032,721	+		GFF5036	0.64	+0.8
5,032,721	+		GFF5036	0.64	+1.0
5,032,721	+		GFF5036	0.64	+0.3
5,032,721	+		GFF5036	0.64	+0.9
5,032,721	+		GFF5036	0.64	-0.3
5,032,725	-		GFF5036	0.64	-0.4
5,032,729	-		GFF5036	0.65	+0.4
5,032,729	-		GFF5036	0.65	+0.7
5,032,729	-		GFF5036	0.65	+0.5
5,032,729	-		GFF5036	0.65	+0.2
5,032,729	-		GFF5036	0.65	-0.3
5,032,729	-		GFF5036	0.65	+0.5
5,032,729	-		GFF5036	0.65	-0.3
5,032,736	+		GFF5036	0.65	+0.8
5,032,744	-		GFF5036	0.66	+0.4
5,032,744	-		GFF5036	0.66	-1.1
5,032,752	+		GFF5036	0.66	+0.6
5,032,792	+		GFF5036	0.69	+0.0
5,032,800	-		GFF5036	0.70	+1.3
5,032,800	-		GFF5036	0.70	-1.5
5,032,800	-		GFF5036	0.70	+0.6
5,032,800	-		GFF5036	0.70	-0.4
5,032,823	+		GFF5036	0.71	-1.3
5,032,823	+		GFF5036	0.71	+0.1
5,032,823	+		GFF5036	0.71	+1.6
5,032,823	+		GFF5036	0.71	+1.2
5,032,823	+		GFF5036	0.71	-0.9
5,032,825	+		GFF5036	0.71	-0.2
5,032,825	+		GFF5036	0.71	-0.3
5,032,825	+		GFF5036	0.71	-0.1
5,032,825	+		GFF5036	0.71	-0.4
5,032,825	+		GFF5036	0.71	-0.9
5,032,825	+		GFF5036	0.71	+0.5
5,032,825	+		GFF5036	0.71	+0.2
5,032,825	+		GFF5036	0.71	+0.8
5,032,825	+		GFF5036	0.71	-1.3
5,032,831	-		GFF5036	0.72	+0.7
5,032,831	-		GFF5036	0.72	-0.3
5,032,831	-		GFF5036	0.72	-2.2
5,032,831	-		GFF5036	0.72	-1.2
5,032,833	-		GFF5036	0.72	-1.9
5,032,833	-		GFF5036	0.72	+1.0
5,032,833	-		GFF5036	0.72	-0.7
5,032,833	-		GFF5036	0.72	-0.1
5,032,833	-		GFF5036	0.72	-1.5
5,032,833	-		GFF5036	0.72	-0.0
5,032,833	-		GFF5036	0.72	-0.9
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5,032,833	-		GFF5036	0.72	+1.1
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5,033,044	+		GFF5036	0.87	+0.8
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5,033,092	+				-0.4
5,033,099	+				-0.3
5,033,105	-				+0.3
5,033,107	-				+0.8
5,033,119	-				+0.4
5,033,134	+				+0.6
5,033,134	+				+0.2
5,033,138	-				+0.2
5,033,152	-				+0.7
5,033,170	+				+0.5
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5,033,198	+				+0.3
5,033,198	+				-1.0
5,033,198	+				+1.7
5,033,200	+				+0.4
5,033,200	-				-0.7
5,033,200	-				-0.0
5,033,200	-				+0.5
5,033,201	-				-0.1
5,033,206	-				-0.1
5,033,208	-				+1.1
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5,033,210	+				+0.7
5,033,210	+				-0.7
5,033,210	+				-1.1
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5,033,215	+				+0.5
5,033,215	+				+0.3
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5,033,223	-				-0.1
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5,033,228	-				+0.7
5,033,246	+				-1.2
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5,033,259	-				-1.8
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