Strain Fitness in Sphingobium sp. HT1-2 around GFF4946

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,937,834	+				-0.4
4,937,834	+				+0.5
4,937,835	-				-1.0
4,937,851	-				-0.9
4,937,866	-				-1.9
4,937,877	+				-0.2
4,937,885	-				+0.5
4,937,890	-				-1.2
4,937,971	-				-0.3
4,937,973	+				-0.5
4,937,973	+				-1.9
4,937,981	-				-0.1
4,937,981	-				-1.4
4,937,981	-				-1.7
4,937,999	-				-1.4
4,938,009	+				-1.0
4,938,021	-				-2.7
4,938,032	+				+1.0
4,938,037	+				+0.4
4,938,040	-				-2.3
4,938,040	-				-1.7
4,938,040	-				-0.7
4,938,040	-				-0.6
4,938,044	+				-1.3
4,938,045	-				-0.9
4,938,045	-				-0.7
4,938,045	-				-1.7
4,938,053	+				-2.6
4,938,117	+				-1.0
4,938,129	-				-0.9
4,938,140	+				-2.0
4,938,146	-		GFF4946	0.10	-0.2
4,938,183	+		GFF4946	0.13	+0.2
4,938,183	+		GFF4946	0.13	-1.7
4,938,183	+		GFF4946	0.13	-0.7
4,938,189	-		GFF4946	0.13	-1.0
4,938,191	-		GFF4946	0.13	-1.0
4,938,191	-		GFF4946	0.13	-2.0
4,938,194	+		GFF4946	0.13	+0.7
4,938,197	-		GFF4946	0.14	-1.1
4,938,206	-		GFF4946	0.14	-2.3
4,938,222	+		GFF4946	0.15	-0.7
4,938,226	-		GFF4946	0.16	-1.0
4,938,270	+		GFF4946	0.18	-1.0
4,938,275	+		GFF4946	0.19	-0.3
4,938,280	+		GFF4946	0.19	+0.0
4,938,280	+		GFF4946	0.19	+0.8
4,938,280	+		GFF4946	0.19	+0.5
4,938,280	+		GFF4946	0.19	+0.3
4,938,280	+		GFF4946	0.19	-0.9
4,938,280	+		GFF4946	0.19	-1.2
4,938,280	+		GFF4946	0.19	-2.3
4,938,280	+		GFF4946	0.19	-1.3
4,938,280	+		GFF4946	0.19	-0.8
4,938,288	-		GFF4946	0.20	-0.4
4,938,288	-		GFF4946	0.20	-2.0
4,938,288	-		GFF4946	0.20	-0.5
4,938,288	-		GFF4946	0.20	+0.6
4,938,288	-		GFF4946	0.20	-1.5
4,938,288	-		GFF4946	0.20	-1.3
4,938,288	-		GFF4946	0.20	+0.2
4,938,288	-		GFF4946	0.20	-0.8
4,938,288	-		GFF4946	0.20	-0.1
4,938,288	-		GFF4946	0.20	-0.4
4,938,288	-		GFF4946	0.20	-1.6
4,938,288	-		GFF4946	0.20	-0.6
4,938,290	+		GFF4946	0.20	-1.8
4,938,293	-		GFF4946	0.20	-2.1
4,938,295	+		GFF4946	0.20	+1.4
4,938,295	+		GFF4946	0.20	+0.4
4,938,295	+		GFF4946	0.20	-2.0
4,938,298	-		GFF4946	0.20	-0.9
4,938,298	-		GFF4946	0.20	-1.7
4,938,303	-		GFF4946	0.21	-0.8
4,938,303	-		GFF4946	0.21	-0.5
4,938,303	-		GFF4946	0.21	-0.9
4,938,313	-		GFF4946	0.21	+0.3
4,938,316	+		GFF4946	0.22	-0.8
4,938,316	+		GFF4946	0.22	-0.6
4,938,316	+		GFF4946	0.22	+0.3
4,938,319	-		GFF4946	0.22	-0.9
4,938,321	+		GFF4946	0.22	-0.5
4,938,321	+		GFF4946	0.22	-1.1
4,938,321	+		GFF4946	0.22	+0.9
4,938,321	+		GFF4946	0.22	-0.6
4,938,321	+		GFF4946	0.22	-0.6
4,938,321	+		GFF4946	0.22	+0.0
4,938,321	+		GFF4946	0.22	-0.3
4,938,321	+		GFF4946	0.22	-2.7
4,938,321	+		GFF4946	0.22	-1.5
4,938,324	-		GFF4946	0.22	-0.9
4,938,326	+		GFF4946	0.22	-1.0
4,938,326	+		GFF4946	0.22	-0.7
4,938,326	+		GFF4946	0.22	-0.1
4,938,326	+		GFF4946	0.22	-0.0
4,938,326	+		GFF4946	0.22	+0.4
4,938,326	+		GFF4946	0.22	-1.4
4,938,326	+		GFF4946	0.22	+0.1
4,938,326	+		GFF4946	0.22	-0.4
4,938,326	+		GFF4946	0.22	+0.2
4,938,329	-		GFF4946	0.22	-0.2
4,938,329	-		GFF4946	0.22	-1.6
4,938,329	-		GFF4946	0.22	+0.8
4,938,329	-		GFF4946	0.22	-1.1
4,938,329	-		GFF4946	0.22	-0.7
4,938,329	-		GFF4946	0.22	-2.0
4,938,334	-		GFF4946	0.23	-0.8
4,938,334	-		GFF4946	0.23	+0.4
4,938,334	-		GFF4946	0.23	-1.5
4,938,334	-		GFF4946	0.23	-1.9
4,938,334	-		GFF4946	0.23	+0.5
4,938,334	-		GFF4946	0.23	-2.4
4,938,335	+		GFF4946	0.23	-1.1
4,938,351	-		GFF4946	0.24	+0.1
4,938,362	+		GFF4946	0.25	-0.2
4,938,375	+		GFF4946	0.25	+1.5
4,938,375	+		GFF4946	0.25	-1.3
4,938,378	+		GFF4946	0.26	+0.3
4,938,378	-		GFF4946	0.26	-1.7
4,938,383	-		GFF4946	0.26	-1.2
4,938,397	+		GFF4946	0.27	-1.1
4,938,407	+		GFF4946	0.28	-0.8
4,938,407	+		GFF4946	0.28	-0.3
4,938,407	+		GFF4946	0.28	+0.5
4,938,415	-		GFF4946	0.28	-0.6
4,938,420	+		GFF4946	0.28	-0.1
4,938,428	-		GFF4946	0.29	-0.5
4,938,436	-		GFF4946	0.30	-2.2
4,938,438	+		GFF4946	0.30	-0.6
4,938,438	+		GFF4946	0.30	-0.4
4,938,438	+		GFF4946	0.30	-1.3
4,938,438	+		GFF4946	0.30	-0.3
4,938,438	+		GFF4946	0.30	-0.4
4,938,438	+		GFF4946	0.30	+0.2
4,938,438	+		GFF4946	0.30	-1.0
4,938,438	+		GFF4946	0.30	-0.3
4,938,438	+		GFF4946	0.30	-2.5
4,938,446	-		GFF4946	0.30	+0.7
4,938,446	-		GFF4946	0.30	-0.9
4,938,446	-		GFF4946	0.30	-0.1
4,938,446	-		GFF4946	0.30	-1.3
4,938,446	-		GFF4946	0.30	-0.0
4,938,446	-		GFF4946	0.30	-1.6
4,938,446	-		GFF4946	0.30	+0.4
4,938,471	+		GFF4946	0.32	-0.7
4,938,471	+		GFF4946	0.32	-0.4
4,938,471	-		GFF4946	0.32	-0.4
4,938,479	-		GFF4946	0.32	+0.5
4,938,488	+		GFF4946	0.33	+0.0
4,938,488	+		GFF4946	0.33	-1.0
4,938,490	-		GFF4946	0.33	-0.4
4,938,494	+		GFF4946	0.33	-0.4
4,938,495	-		GFF4946	0.33	-0.5
4,938,514	+		GFF4946	0.35	+0.2
4,938,522	-		GFF4946	0.35	+0.2
4,938,527	-		GFF4946	0.36	-2.7
4,938,534	+		GFF4946	0.36	-0.7
4,938,548	-		GFF4946	0.37	+0.1
4,938,548	-		GFF4946	0.37	-0.6
4,938,558	-		GFF4946	0.38	+1.3
4,938,593	-		GFF4946	0.40	-0.8
4,938,601	+		GFF4946	0.41	-1.5
4,938,614	+		GFF4946	0.41	-1.3
4,938,614	+		GFF4946	0.41	-0.7
4,938,616	+		GFF4946	0.42	-0.1
4,938,622	-		GFF4946	0.42	-0.3
4,938,624	-		GFF4946	0.42	+0.3
4,938,634	+		GFF4946	0.43	-0.2
4,938,648	-		GFF4946	0.44	-0.8
4,938,661	-		GFF4946	0.45	-0.3
4,938,677	+		GFF4946	0.46	-0.4
4,938,677	+		GFF4946	0.46	-1.5
4,938,677	+		GFF4946	0.46	-0.2
4,938,677	+		GFF4946	0.46	-0.3
4,938,677	+		GFF4946	0.46	-1.4
4,938,677	+		GFF4946	0.46	+0.0
4,938,677	+		GFF4946	0.46	+0.3
4,938,677	+		GFF4946	0.46	-2.1
4,938,677	+		GFF4946	0.46	-0.2
4,938,677	+		GFF4946	0.46	-1.1
4,938,677	+		GFF4946	0.46	+0.1
4,938,677	+		GFF4946	0.46	-0.0
4,938,684	+		GFF4946	0.46	-0.2
4,938,685	-		GFF4946	0.46	-0.1
4,938,685	-		GFF4946	0.46	-0.8
4,938,685	-		GFF4946	0.46	-0.9
4,938,685	-		GFF4946	0.46	-0.7
4,938,685	-		GFF4946	0.46	-0.3
4,938,685	-		GFF4946	0.46	+0.4
4,938,685	-		GFF4946	0.46	-0.6
4,938,685	-		GFF4946	0.46	-0.7
4,938,685	-		GFF4946	0.46	-0.9
4,938,685	-		GFF4946	0.46	-1.7
4,938,685	-		GFF4946	0.46	-1.4
4,938,685	-		GFF4946	0.46	-0.4
4,938,690	-		GFF4946	0.46	-1.2
4,938,690	-		GFF4946	0.46	-2.7
4,938,692	-		GFF4946	0.47	-2.7
4,938,701	+		GFF4946	0.47	-1.0
4,938,744	-		GFF4946	0.50	-0.5
4,938,779	+		GFF4946	0.52	-2.2
4,938,789	+		GFF4946	0.53	-0.8
4,938,805	-		GFF4946	0.54	-0.2
4,938,814	+		GFF4946	0.55	-0.9
4,938,838	-		GFF4946	0.56	-0.1
4,938,855	+		GFF4946	0.57	-1.0
4,938,855	+		GFF4946	0.57	-0.3
4,938,855	+		GFF4946	0.57	-0.1
4,938,863	-		GFF4946	0.58	+0.1
4,938,885	-		GFF4946	0.59	-0.7
4,938,887	-		GFF4946	0.60	-1.4
4,938,887	-		GFF4946	0.60	-1.3
4,938,893	-		GFF4946	0.60	-0.7
4,938,898	+		GFF4946	0.60	+0.0
4,938,898	+		GFF4946	0.60	-1.3
4,938,898	+		GFF4946	0.60	+0.4
4,938,906	-		GFF4946	0.61	-0.5
4,938,906	-		GFF4946	0.61	+0.7
4,938,906	-		GFF4946	0.61	-0.4
4,938,906	-		GFF4946	0.61	-0.0
4,938,906	-		GFF4946	0.61	-0.3
4,938,918	+		GFF4946	0.62	+0.2
4,938,944	-		GFF4946	0.63	-0.1
4,938,944	-		GFF4946	0.63	-0.8
4,938,963	+		GFF4946	0.65	-0.5
4,938,963	+		GFF4946	0.65	-0.6
4,938,963	+		GFF4946	0.65	-1.9
4,938,963	+		GFF4946	0.65	-0.7
4,938,963	+		GFF4946	0.65	-0.9
4,938,963	+		GFF4946	0.65	-1.1
4,938,963	+		GFF4946	0.65	-0.6
4,938,968	+		GFF4946	0.65	-0.3
4,938,971	-		GFF4946	0.65	+0.7
4,938,971	-		GFF4946	0.65	-0.8
4,938,971	-		GFF4946	0.65	-2.0
4,938,971	-		GFF4946	0.65	-0.5
4,938,995	-		GFF4946	0.67	-0.2
4,939,010	-		GFF4946	0.68	-1.2
4,939,025	+		GFF4946	0.69	-0.4
4,939,031	+		GFF4946	0.69	-1.0
4,939,031	+		GFF4946	0.69	-0.5
4,939,031	+		GFF4946	0.69	-0.8
4,939,031	+		GFF4946	0.69	-1.6
4,939,036	+		GFF4946	0.70	-0.4
4,939,036	+		GFF4946	0.70	-0.9
4,939,036	+		GFF4946	0.70	-1.0
4,939,036	+		GFF4946	0.70	-0.8
4,939,036	+		GFF4946	0.70	-2.0
4,939,039	-		GFF4946	0.70	+0.0
4,939,041	+		GFF4946	0.70	-1.5
4,939,044	-		GFF4946	0.70	-2.0
4,939,044	-		GFF4946	0.70	-0.9
4,939,044	-		GFF4946	0.70	-1.4
4,939,049	-		GFF4946	0.70	-3.1
4,939,049	-		GFF4946	0.70	-0.9
4,939,063	+		GFF4946	0.71	-0.7
4,939,067	-		GFF4946	0.72	-1.0
4,939,084	+		GFF4946	0.73	-1.7
4,939,084	+		GFF4946	0.73	-1.2
4,939,126	+		GFF4946	0.76	-1.0
4,939,126	+		GFF4946	0.76	-0.2
4,939,126	+		GFF4946	0.76	-0.9
4,939,126	+		GFF4946	0.76	-0.7
4,939,126	+		GFF4946	0.76	-0.3
4,939,126	+		GFF4946	0.76	-2.0
4,939,126	+		GFF4946	0.76	-0.9
4,939,126	+		GFF4946	0.76	-0.7
4,939,126	+		GFF4946	0.76	-1.4
4,939,126	+		GFF4946	0.76	-2.7
4,939,126	+		GFF4946	0.76	-1.6
4,939,126	+		GFF4946	0.76	-0.5
4,939,126	+		GFF4946	0.76	-1.7
4,939,129	-		GFF4946	0.76	-0.4
4,939,129	-		GFF4946	0.76	+1.1
4,939,134	-		GFF4946	0.76	+0.2
4,939,134	-		GFF4946	0.76	+0.0
4,939,134	-		GFF4946	0.76	-0.2
4,939,134	-		GFF4946	0.76	-0.7
4,939,134	-		GFF4946	0.76	-1.7
4,939,134	-		GFF4946	0.76	-0.3
4,939,134	-		GFF4946	0.76	+0.1
4,939,134	-		GFF4946	0.76	-2.1
4,939,134	-		GFF4946	0.76	-1.7
4,939,134	-		GFF4946	0.76	-1.4
4,939,134	-		GFF4946	0.76	-0.1
4,939,144	+		GFF4946	0.77	-1.1
4,939,144	+		GFF4946	0.77	-0.1
4,939,144	+		GFF4946	0.77	+0.3
4,939,146	+		GFF4946	0.77	-1.3
4,939,146	+		GFF4946	0.77	-0.2
4,939,152	-		GFF4946	0.77	-1.8
4,939,152	-		GFF4946	0.77	-0.5
4,939,154	-		GFF4946	0.77	-0.7
4,939,154	-		GFF4946	0.77	-1.2
4,939,154	-		GFF4946	0.77	+0.3
4,939,178	+		GFF4946	0.79	+0.1
4,939,178	+		GFF4946	0.79	-0.3
4,939,178	+		GFF4946	0.79	-1.2
4,939,178	+		GFF4946	0.79	-0.8
4,939,186	-		GFF4946	0.80	-0.3
4,939,186	-		GFF4946	0.80	-1.1
4,939,186	-		GFF4946	0.80	+0.1
4,939,186	-		GFF4946	0.80	-0.1
4,939,186	-		GFF4946	0.80	+0.1
4,939,186	-		GFF4946	0.80	-0.6
4,939,193	-		GFF4946	0.80	-1.3
4,939,205	+		GFF4946	0.81	-1.3
4,939,217	-		GFF4946	0.82	+0.4
4,939,242	-		GFF4946	0.83	-1.2
4,939,266	+		GFF4946	0.85	-2.2
4,939,266	+		GFF4946	0.85	-0.6
4,939,273	+		GFF4946	0.85	+0.1
4,939,274	-		GFF4946	0.85	-1.1
4,939,278	+		GFF4946	0.86	-0.6
4,939,278	+		GFF4946	0.86	+0.8
4,939,278	+		GFF4946	0.86	-2.8
4,939,291	-		GFF4946	0.87	+0.1
4,939,307	-		GFF4946	0.88	-0.7
4,939,309	+		GFF4946	0.88	+0.3
4,939,324	+		GFF4946	0.89	-0.5
4,939,328	+		GFF4946	0.89	-1.4
4,939,328	+		GFF4946	0.89	+1.2
4,939,333	+		GFF4946	0.89	-2.1
4,939,336	-		GFF4946	0.90	-3.1
4,939,336	-		GFF4946	0.90	-2.1
4,939,336	-		GFF4946	0.90	-0.3
4,939,336	-		GFF4946	0.90	-0.9
4,939,336	-		GFF4946	0.90	-0.9
4,939,341	-		GFF4946	0.90	-1.9
4,939,365	+				-1.1
4,939,365	+				-0.2
4,939,373	-				-0.0
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4,939,373	-				-0.2
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4,939,398	+				+1.1
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4,939,414	+				+0.1
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4,939,448	+				-0.7
4,939,456	-				-0.7
4,939,459	+				+0.1
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4,939,481	-				-0.4
4,939,520	-				-0.5
4,939,540	+				-0.2
4,939,540	+				-0.8
4,939,540	+				+0.2
4,939,540	+				+0.6
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4,939,548	-				-0.2
4,939,567	-				-0.7
4,939,578	+				-1.8
4,939,578	+				-1.9
4,939,578	+				-3.6
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4,939,586	-				-2.9
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4,939,586	-				+0.0
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4,939,601	+				-0.8
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4,940,257	-		GFF4947	0.59	-3.0
4,940,257	-		GFF4947	0.59	-1.4
4,940,257	-		GFF4947	0.59	-1.4
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4,940,458	-		GFF4947	0.75	-2.1
4,940,458	-		GFF4947	0.75	-2.1
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