Strain Fitness in Sphingobium sp. HT1-2 around GFF4909

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,900,371	+		GFF4907	0.27	-0.1
4,900,398	-		GFF4907	0.30	-0.2
4,900,400	+		GFF4907	0.30	-1.8
4,900,400	+		GFF4907	0.30	+0.1
4,900,400	+		GFF4907	0.30	+1.5
4,900,400	+		GFF4907	0.30	+1.4
4,900,400	+		GFF4907	0.30	-0.1
4,900,400	+		GFF4907	0.30	-1.3
4,900,408	-		GFF4907	0.31	-0.5
4,900,408	-		GFF4907	0.31	-1.6
4,900,494	+		GFF4907	0.42	-2.0
4,900,495	+		GFF4907	0.42	-0.7
4,900,502	-		GFF4907	0.43	-0.0
4,900,514	+		GFF4907	0.44	-1.8
4,900,517	+		GFF4907	0.45	+0.5
4,900,517	+		GFF4907	0.45	-0.7
4,900,518	+		GFF4907	0.45	-1.7
4,900,522	-		GFF4907	0.45	-2.2
4,900,528	+		GFF4907	0.46	-0.3
4,900,528	+		GFF4907	0.46	-0.1
4,900,532	-		GFF4907	0.46	-2.0
4,900,533	+		GFF4907	0.46	+0.1
4,900,533	+		GFF4907	0.46	-0.3
4,900,536	-		GFF4907	0.47	-0.6
4,900,536	-		GFF4907	0.47	-2.1
4,900,536	-		GFF4907	0.47	+0.0
4,900,536	-		GFF4907	0.47	-1.0
4,900,536	-		GFF4907	0.47	-0.3
4,900,536	-		GFF4907	0.47	-0.2
4,900,536	-		GFF4907	0.47	+0.3
4,900,541	-		GFF4907	0.47	+0.1
4,900,546	-		GFF4907	0.48	-0.1
4,900,562	-		GFF4907	0.50	-0.3
4,900,579	-		GFF4907	0.52	-0.6
4,900,582	+		GFF4907	0.53	+1.2
4,900,606	+		GFF4907	0.55	+1.2
4,900,606	+		GFF4907	0.55	-2.2
4,900,614	-		GFF4907	0.56	-0.6
4,900,614	-		GFF4907	0.56	-0.8
4,900,619	+		GFF4907	0.57	-0.2
4,900,644	+		GFF4907	0.60	-1.5
4,900,644	+		GFF4907	0.60	-0.9
4,900,651	+		GFF4907	0.61	-1.0
4,900,652	-		GFF4907	0.61	-0.2
4,900,652	-		GFF4907	0.61	-0.7
4,900,652	-		GFF4907	0.61	-0.3
4,900,652	-		GFF4907	0.61	-0.6
4,900,667	+		GFF4907	0.63	+0.7
4,900,667	+		GFF4907	0.63	-1.7
4,900,667	+		GFF4907	0.63	-0.4
4,900,669	-		GFF4907	0.63	-0.4
4,900,675	-		GFF4907	0.64	+0.5
4,900,675	-		GFF4907	0.64	-1.7
4,900,675	-		GFF4907	0.64	-0.4
4,900,698	-		GFF4907	0.67	-1.9
4,900,698	-		GFF4907	0.67	+0.4
4,900,713	+		GFF4907	0.69	+0.9
4,900,713	+		GFF4907	0.69	-0.5
4,900,715	+		GFF4907	0.69	-1.7
4,900,715	+		GFF4907	0.69	-0.5
4,900,715	+		GFF4907	0.69	-0.7
4,900,715	+		GFF4907	0.69	-1.5
4,900,715	+		GFF4907	0.69	-0.6
4,900,715	+		GFF4907	0.69	-1.5
4,900,715	+		GFF4907	0.69	-1.9
4,900,721	-		GFF4907	0.70	+0.3
4,900,721	-		GFF4907	0.70	-0.4
4,900,723	-		GFF4907	0.70	-1.0
4,900,723	-		GFF4907	0.70	+1.3
4,900,723	-		GFF4907	0.70	-0.9
4,900,723	-		GFF4907	0.70	-0.1
4,900,723	-		GFF4907	0.70	-0.6
4,900,723	-		GFF4907	0.70	-1.0
4,900,723	-		GFF4907	0.70	-1.9
4,900,723	-		GFF4907	0.70	-1.5
4,900,723	-		GFF4907	0.70	-0.8
4,900,723	-		GFF4907	0.70	-0.5
4,900,723	-		GFF4907	0.70	+0.9
4,900,728	-		GFF4907	0.70	-2.0
4,900,730	+		GFF4907	0.71	+0.1
4,900,751	-		GFF4907	0.73	-0.4
4,900,794	+		GFF4907	0.79	+0.0
4,900,802	-		GFF4907	0.80	-0.8
4,900,818	-		GFF4907	0.82	-1.0
4,900,818	-		GFF4907	0.82	+0.1
4,900,821	+		GFF4907	0.82	+0.4
4,900,825	-		GFF4907	0.82	-1.1
4,900,825	-		GFF4907	0.82	-1.7
4,900,843	-		GFF4907	0.85	+0.3
4,900,844	-		GFF4907	0.85	-1.9
4,900,845	+		GFF4907	0.85	-0.2
4,900,845	+		GFF4907	0.85	-0.4
4,900,845	+		GFF4907	0.85	-1.0
4,900,845	+		GFF4907	0.85	+0.2
4,900,845	+		GFF4907	0.85	-0.5
4,900,845	+		GFF4907	0.85	-1.3
4,900,845	+		GFF4907	0.85	-0.5
4,900,845	+		GFF4907	0.85	-0.5
4,900,845	+		GFF4907	0.85	+0.2
4,900,845	+		GFF4907	0.85	+0.7
4,900,845	+		GFF4907	0.85	+1.1
4,900,845	+		GFF4907	0.85	-1.3
4,900,845	+		GFF4907	0.85	-0.6
4,900,845	+		GFF4907	0.85	-0.5
4,900,845	+		GFF4907	0.85	-0.6
4,900,845	+		GFF4907	0.85	-1.2
4,900,845	+		GFF4907	0.85	-2.3
4,900,845	+		GFF4907	0.85	-0.3
4,900,845	+		GFF4907	0.85	+0.5
4,900,845	+		GFF4907	0.85	-1.7
4,900,845	+		GFF4907	0.85	-1.1
4,900,845	+		GFF4907	0.85	-0.7
4,900,845	+		GFF4907	0.85	-1.1
4,900,845	+		GFF4907	0.85	+0.5
4,900,845	+		GFF4907	0.85	-0.9
4,900,848	-		GFF4907	0.85	-0.3
4,900,853	-		GFF4907	0.86	-0.6
4,900,853	-		GFF4907	0.86	-0.4
4,900,853	-		GFF4907	0.86	+0.6
4,900,853	-		GFF4907	0.86	+0.9
4,900,853	-		GFF4907	0.86	+0.4
4,900,853	-		GFF4907	0.86	-0.8
4,900,853	-		GFF4907	0.86	-0.3
4,900,853	-		GFF4907	0.86	-1.0
4,900,853	-		GFF4907	0.86	+0.4
4,900,853	-		GFF4907	0.86	+0.6
4,900,853	-		GFF4907	0.86	-0.3
4,900,853	-		GFF4907	0.86	-2.1
4,900,853	-		GFF4907	0.86	+0.8
4,900,853	-		GFF4907	0.86	-0.6
4,900,853	-		GFF4907	0.86	-2.5
4,900,853	-		GFF4907	0.86	+0.8
4,900,853	-		GFF4907	0.86	+0.5
4,900,853	-		GFF4907	0.86	+0.1
4,900,853	-		GFF4907	0.86	-1.2
4,900,853	-		GFF4907	0.86	-1.3
4,900,853	-		GFF4907	0.86	-0.4
4,900,853	-		GFF4907	0.86	-1.3
4,900,853	-		GFF4907	0.86	+1.0
4,900,853	-		GFF4907	0.86	-2.1
4,900,853	-		GFF4907	0.86	-1.6
4,900,853	-		GFF4907	0.86	-3.0
4,900,853	-		GFF4907	0.86	+0.9
4,900,853	-		GFF4907	0.86	-0.4
4,900,853	-		GFF4907	0.86	-1.1
4,900,854	-		GFF4907	0.86	-1.1
4,900,878	-		GFF4907	0.89	+0.6
4,900,911	-				-1.3
4,900,911	-				-1.1
4,900,916	-				-0.3
4,900,921	-				-1.0
4,900,927	-				-1.4
4,900,929	+				+0.9
4,900,929	+				+0.9
4,900,929	+				+0.9
4,900,929	+				-0.6
4,900,929	+				-0.3
4,900,929	+				-2.7
4,900,929	+				-0.9
4,900,929	+				-1.1
4,900,934	+				-0.4
4,900,934	+				-0.5
4,900,934	+				+1.2
4,900,934	+				-1.1
4,900,934	+				-1.5
4,900,937	-				-0.9
4,900,937	-				-0.8
4,900,937	-				-0.1
4,900,937	-				+0.3
4,900,937	-				+0.8
4,900,937	-				-0.7
4,900,937	-				-1.5
4,900,937	-				+0.1
4,900,937	-				-1.1
4,900,942	-				+0.5
4,900,942	-				-1.1
4,900,942	-				+0.7
4,900,942	-				-0.6
4,900,947	-				+0.4
4,900,959	-				+0.1
4,900,959	-				-1.1
4,901,032	-		GFF4908	0.16	-0.1
4,901,045	+		GFF4908	0.20	-1.0
4,901,045	-		GFF4908	0.20	+1.1
4,901,053	-		GFF4908	0.22	-0.4
4,901,055	-		GFF4908	0.22	-0.2
4,901,075	-		GFF4908	0.28	+0.7
4,901,095	-		GFF4908	0.33	-0.9
4,901,097	+		GFF4908	0.33	+0.1
4,901,105	-		GFF4908	0.35	-0.9
4,901,110	+		GFF4908	0.37	+0.6
4,901,110	+		GFF4908	0.37	-1.1
4,901,110	+		GFF4908	0.37	-0.1
4,901,110	+		GFF4908	0.37	-0.1
4,901,110	+		GFF4908	0.37	-2.3
4,901,110	+		GFF4908	0.37	-0.2
4,901,110	+		GFF4908	0.37	-0.9
4,901,118	-		GFF4908	0.39	-0.1
4,901,118	-		GFF4908	0.39	-0.3
4,901,118	-		GFF4908	0.39	-0.2
4,901,118	-		GFF4908	0.39	-0.1
4,901,118	-		GFF4908	0.39	-0.0
4,901,118	-		GFF4908	0.39	-2.7
4,901,118	-		GFF4908	0.39	-0.6
4,901,120	+		GFF4908	0.39	+0.9
4,901,120	+		GFF4908	0.39	-0.3
4,901,120	+		GFF4908	0.39	-0.9
4,901,120	+		GFF4908	0.39	-2.3
4,901,128	-		GFF4908	0.41	-0.6
4,901,128	-		GFF4908	0.41	-2.5
4,901,128	-		GFF4908	0.41	+1.1
4,901,130	+		GFF4908	0.42	-0.8
4,901,130	+		GFF4908	0.42	-2.1
4,901,130	+		GFF4908	0.42	-2.1
4,901,130	+		GFF4908	0.42	-2.2
4,901,130	+		GFF4908	0.42	-0.0
4,901,130	+		GFF4908	0.42	-2.0
4,901,130	+		GFF4908	0.42	-1.4
4,901,130	+		GFF4908	0.42	-2.6
4,901,130	+		GFF4908	0.42	+0.9
4,901,130	+		GFF4908	0.42	-2.2
4,901,132	+		GFF4908	0.42	-0.2
4,901,138	-		GFF4908	0.44	-1.0
4,901,138	-		GFF4908	0.44	-0.9
4,901,138	-		GFF4908	0.44	-0.8
4,901,138	-		GFF4908	0.44	-2.5
4,901,138	-		GFF4908	0.44	-0.9
4,901,138	-		GFF4908	0.44	+0.8
4,901,138	-		GFF4908	0.44	-0.1
4,901,138	-		GFF4908	0.44	-0.4
4,901,138	-		GFF4908	0.44	-0.4
4,901,138	-		GFF4908	0.44	+0.9
4,901,170	+		GFF4908	0.52	+1.4
4,901,173	-		GFF4908	0.53	-0.8
4,901,175	+		GFF4908	0.54	-0.4
4,901,183	-		GFF4908	0.56	+0.6
4,901,213	+		GFF4908	0.64	+0.6
4,901,221	-		GFF4908	0.66	-1.6
4,901,230	+		GFF4908	0.68	-1.0
4,901,253	+		GFF4908	0.74	-0.9
4,901,253	+		GFF4908	0.74	-0.5
4,901,253	+		GFF4908	0.74	+0.1
4,901,253	+		GFF4908	0.74	-0.4
4,901,253	+		GFF4908	0.74	-2.0
4,901,254	+		GFF4908	0.74	-1.3
4,901,261	-		GFF4908	0.76	-2.9
4,901,261	-		GFF4908	0.76	-0.5
4,901,261	-		GFF4908	0.76	-1.3
4,901,261	-		GFF4908	0.76	-1.0
4,901,261	-		GFF4908	0.76	+0.2
4,901,261	-		GFF4908	0.76	-0.5
4,901,262	-		GFF4908	0.76	-0.7
4,901,270	+		GFF4908	0.78	-0.7
4,901,270	+		GFF4908	0.78	-0.1
4,901,270	+		GFF4908	0.78	-0.7
4,901,278	-		GFF4908	0.80	-0.6
4,901,278	-		GFF4908	0.80	-0.9
4,901,280	-		GFF4908	0.81	-2.1
4,901,337	+				-0.9
4,901,363	+				-0.9
4,901,364	-				+0.6
4,901,365	+				-1.0
4,901,369	-				+0.2
4,901,373	-				+0.5
4,901,375	+				-1.4
4,901,383	-				-0.3
4,901,383	-				-1.4
4,901,383	-				-1.7
4,901,383	-				-1.1
4,901,402	+				-2.4
4,901,410	-				-0.4
4,901,425	+		GFF4909	0.13	-2.2
4,901,430	+		GFF4909	0.14	-0.6
4,901,439	-		GFF4909	0.16	-0.6
4,901,441	+		GFF4909	0.16	+0.1
4,901,481	+		GFF4909	0.25	-1.6
4,901,481	+		GFF4909	0.25	-2.7
4,901,481	+		GFF4909	0.25	-0.9
4,901,483	+		GFF4909	0.25	-0.8
4,901,483	+		GFF4909	0.25	+1.0
4,901,489	-		GFF4909	0.26	-0.7
4,901,491	+		GFF4909	0.27	+0.4
4,901,491	+		GFF4909	0.27	-0.1
4,901,491	+		GFF4909	0.27	+1.1
4,901,491	+		GFF4909	0.27	-1.7
4,901,491	-		GFF4909	0.27	-0.1
4,901,496	+		GFF4909	0.28	+0.6
4,901,496	+		GFF4909	0.28	-0.5
4,901,496	+		GFF4909	0.28	-2.0
4,901,496	+		GFF4909	0.28	-1.0
4,901,496	+		GFF4909	0.28	-2.4
4,901,496	+		GFF4909	0.28	-1.9
4,901,499	-		GFF4909	0.28	-0.9
4,901,499	-		GFF4909	0.28	-1.0
4,901,499	-		GFF4909	0.28	-0.1
4,901,499	-		GFF4909	0.28	+0.5
4,901,499	-		GFF4909	0.28	-2.0
4,901,499	-		GFF4909	0.28	-1.6
4,901,499	-		GFF4909	0.28	-2.1
4,901,501	+		GFF4909	0.29	-0.4
4,901,501	+		GFF4909	0.29	+0.0
4,901,504	-		GFF4909	0.29	-0.8
4,901,504	-		GFF4909	0.29	-2.4
4,901,504	-		GFF4909	0.29	+0.0
4,901,504	-		GFF4909	0.29	-1.1
4,901,504	-		GFF4909	0.29	+0.2
4,901,504	-		GFF4909	0.29	-0.9
4,901,504	-		GFF4909	0.29	-0.9
4,901,508	+		GFF4909	0.30	-2.1
4,901,508	+		GFF4909	0.30	-0.9
4,901,509	-		GFF4909	0.31	+0.6
4,901,509	-		GFF4909	0.31	+0.5
4,901,509	-		GFF4909	0.31	-1.5
4,901,509	-		GFF4909	0.31	+0.2
4,901,535	-		GFF4909	0.36	-1.0
4,901,593	-		GFF4909	0.49	-0.4
4,901,593	-		GFF4909	0.49	+0.7
4,901,595	+		GFF4909	0.49	-1.1
4,901,597	+		GFF4909	0.49	-1.1
4,901,614	-		GFF4909	0.53	-1.5
4,901,614	-		GFF4909	0.53	-2.4
4,901,628	+		GFF4909	0.56	-0.4
4,901,632	+		GFF4909	0.57	+0.2
4,901,645	-		GFF4909	0.60	-0.3
4,901,653	+		GFF4909	0.61	+0.0
4,901,684	+		GFF4909	0.68	-0.9
4,901,684	+		GFF4909	0.68	-0.7
4,901,689	+		GFF4909	0.69	+0.1
4,901,689	+		GFF4909	0.69	-2.0
4,901,689	+		GFF4909	0.69	-0.2
4,901,691	+		GFF4909	0.69	-1.5
4,901,691	+		GFF4909	0.69	-1.9
4,901,692	-		GFF4909	0.70	-0.3
4,901,696	+		GFF4909	0.71	-0.2
4,901,697	-		GFF4909	0.71	+0.3
4,901,697	-		GFF4909	0.71	-0.1
4,901,706	+		GFF4909	0.73	-0.4
4,901,706	+		GFF4909	0.73	-0.8
4,901,706	+		GFF4909	0.73	+0.1
4,901,706	+		GFF4909	0.73	-1.5
4,901,706	+		GFF4909	0.73	-0.7
4,901,706	+		GFF4909	0.73	+0.1
4,901,706	+		GFF4909	0.73	-1.7
4,901,706	+		GFF4909	0.73	-1.4
4,901,706	+		GFF4909	0.73	-1.1
4,901,706	+		GFF4909	0.73	-1.1
4,901,706	+		GFF4909	0.73	-1.8
4,901,706	+		GFF4909	0.73	-0.1
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4,901,714	-		GFF4909	0.74	+0.1
4,901,714	-		GFF4909	0.74	-2.4
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4,901,805	-				-0.9
4,901,824	-				-0.9
4,901,830	+				-0.7
4,901,830	+				-1.9
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4,901,835	+				+0.9
4,901,835	+				+0.1
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4,901,835	+				-0.7
4,901,838	-				+0.2
4,901,838	-				-1.1
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4,901,838	-				-3.0
4,901,838	-				+0.0
4,901,838	-				-0.5
4,901,843	-				-0.1
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4,901,843	-				+0.9
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4,901,853	+				-0.9
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4,901,951	-				-2.1
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