Strain Fitness in Sphingobium sp. HT1-2 around GFF4870

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,855,720	+		GFF4868	0.89	+0.0
4,855,720	+		GFF4868	0.89	-1.0
4,855,728	-		GFF4868	0.90	+0.2
4,855,745	-				+0.6
4,855,758	+				-1.1
4,855,763	+				+0.2
4,855,766	-				+1.5
4,855,783	-				+1.0
4,855,809	-				+0.4
4,855,809	-				+1.1
4,855,809	-				+1.4
4,855,834	-				+0.2
4,855,846	+				-0.1
4,855,881	+				+0.2
4,855,887	+				+0.2
4,855,924	+				+0.0
4,855,924	+				+1.0
4,855,924	+				-0.5
4,855,924	+				-0.6
4,855,927	-				-1.7
4,855,927	-				+0.5
4,855,929	+				+0.7
4,855,929	+				+2.4
4,855,929	+				-0.4
4,855,932	-				+0.6
4,855,932	-				-0.2
4,855,932	-				-1.1
4,855,932	-				+0.7
4,855,956	+				-1.1
4,855,998	+				+0.6
4,855,998	-				-1.1
4,856,017	-		GFF4869	0.11	-0.1
4,856,072	+		GFF4869	0.18	-0.8
4,856,080	-		GFF4869	0.19	-0.0
4,856,082	-		GFF4869	0.20	-0.1
4,856,116	-		GFF4869	0.24	+1.2
4,856,118	+		GFF4869	0.24	-0.5
4,856,126	-		GFF4869	0.25	+0.8
4,856,126	-		GFF4869	0.25	-0.1
4,856,126	-		GFF4869	0.25	+0.5
4,856,170	+		GFF4869	0.31	+0.5
4,856,178	+		GFF4869	0.32	+0.1
4,856,178	+		GFF4869	0.32	-0.5
4,856,201	-		GFF4869	0.35	-0.6
4,856,251	+		GFF4869	0.42	-1.3
4,856,287	+		GFF4869	0.46	+0.1
4,856,313	-		GFF4869	0.50	-0.5
4,856,328	+		GFF4869	0.51	-0.0
4,856,328	+		GFF4869	0.51	-1.3
4,856,328	+		GFF4869	0.51	-0.6
4,856,330	+		GFF4869	0.52	+0.4
4,856,340	+		GFF4869	0.53	+0.0
4,856,340	+		GFF4869	0.53	+0.1
4,856,340	+		GFF4869	0.53	+0.7
4,856,434	+		GFF4869	0.65	-0.1
4,856,450	+		GFF4869	0.67	-0.4
4,856,450	+		GFF4869	0.67	+0.3
4,856,504	+		GFF4869	0.74	-0.4
4,856,505	+		GFF4869	0.74	+0.1
4,856,515	+		GFF4869	0.76	-0.5
4,856,590	+		GFF4869	0.85	+0.7
4,856,626	+				-1.2
4,856,629	-				-0.8
4,856,634	-				-0.7
4,856,645	-				+0.4
4,856,660	-				-0.4
4,856,660	-				+0.7
4,856,660	-				+0.1
4,856,660	-				-0.1
4,856,697	-				-1.1
4,856,726	+				+0.7
4,856,732	+				+0.5
4,856,732	+				+1.5
4,856,737	+				+0.8
4,856,764	-				-0.4
4,856,778	+				+0.6
4,856,786	-				-1.1
4,856,805	-		GFF4870	0.10	-0.1
4,856,807	-		GFF4870	0.10	-0.2
4,856,823	+		GFF4870	0.12	-1.6
4,856,823	+		GFF4870	0.12	-0.1
4,856,833	+		GFF4870	0.13	+0.1
4,856,833	+		GFF4870	0.13	+0.5
4,856,833	+		GFF4870	0.13	-0.8
4,856,833	+		GFF4870	0.13	-0.5
4,856,833	+		GFF4870	0.13	+0.4
4,856,836	-		GFF4870	0.13	-0.1
4,856,836	-		GFF4870	0.13	+0.6
4,856,841	-		GFF4870	0.14	+1.0
4,856,899	+		GFF4870	0.20	+1.1
4,856,901	-		GFF4870	0.20	+1.5
4,856,958	-		GFF4870	0.26	+0.1
4,856,996	-		GFF4870	0.30	-0.1
4,857,001	-		GFF4870	0.30	-0.1
4,857,006	-		GFF4870	0.31	+1.4
4,857,018	+		GFF4870	0.32	+1.5
4,857,018	+		GFF4870	0.32	+0.1
4,857,018	+		GFF4870	0.32	+0.4
4,857,027	+		GFF4870	0.33	-0.5
4,857,044	+		GFF4870	0.35	+0.3
4,857,044	+		GFF4870	0.35	-1.3
4,857,071	+		GFF4870	0.37	-1.1
4,857,071	+		GFF4870	0.37	+0.7
4,857,079	-		GFF4870	0.38	-1.1
4,857,081	+		GFF4870	0.38	+0.4
4,857,081	-		GFF4870	0.38	+0.8
4,857,137	+		GFF4870	0.44	+0.3
4,857,156	+		GFF4870	0.46	+0.2
4,857,159	-		GFF4870	0.46	-1.3
4,857,164	-		GFF4870	0.47	-0.4
4,857,171	+		GFF4870	0.47	+0.1
4,857,200	-		GFF4870	0.50	+0.6
4,857,201	+		GFF4870	0.51	+0.5
4,857,214	-		GFF4870	0.52	-0.8
4,857,214	-		GFF4870	0.52	-1.7
4,857,214	-		GFF4870	0.52	-0.3
4,857,214	-		GFF4870	0.52	-0.2
4,857,216	+		GFF4870	0.52	-0.5
4,857,216	+		GFF4870	0.52	-1.9
4,857,216	+		GFF4870	0.52	-0.0
4,857,216	+		GFF4870	0.52	+1.2
4,857,216	+		GFF4870	0.52	+0.8
4,857,224	-		GFF4870	0.53	+0.3
4,857,224	-		GFF4870	0.53	-1.4
4,857,241	+		GFF4870	0.55	-0.5
4,857,250	-		GFF4870	0.55	-0.1
4,857,254	-		GFF4870	0.56	+0.3
4,857,263	+		GFF4870	0.57	+0.7
4,857,271	+		GFF4870	0.58	+0.9
4,857,273	+		GFF4870	0.58	-0.9
4,857,279	-		GFF4870	0.58	+0.0
4,857,279	-		GFF4870	0.58	+1.1
4,857,279	-		GFF4870	0.58	-0.4
4,857,279	-		GFF4870	0.58	-1.7
4,857,279	-		GFF4870	0.58	-0.9
4,857,279	-		GFF4870	0.58	-0.8
4,857,279	-		GFF4870	0.58	+0.9
4,857,304	+		GFF4870	0.61	-0.3
4,857,307	-		GFF4870	0.61	+0.4
4,857,312	-		GFF4870	0.62	+0.7
4,857,321	+		GFF4870	0.63	+1.4
4,857,329	-		GFF4870	0.64	-0.5
4,857,329	-		GFF4870	0.64	+0.0
4,857,366	-		GFF4870	0.67	+1.2
4,857,366	-		GFF4870	0.67	+0.9
4,857,366	-		GFF4870	0.67	-2.5
4,857,368	-		GFF4870	0.67	-1.3
4,857,387	+		GFF4870	0.69	-0.0
4,857,395	-		GFF4870	0.70	-0.5
4,857,395	-		GFF4870	0.70	-0.6
4,857,395	-		GFF4870	0.70	+1.6
4,857,406	-		GFF4870	0.71	-2.7
4,857,512	+		GFF4870	0.82	+0.7
4,857,522	+		GFF4870	0.83	+0.3
4,857,529	+		GFF4870	0.84	+0.5
4,857,530	-		GFF4870	0.84	-0.9
4,857,530	-		GFF4870	0.84	-1.4
4,857,533	+		GFF4870	0.84	+0.9
4,857,533	+		GFF4870	0.84	-1.3
4,857,541	-		GFF4870	0.85	-0.4
4,857,541	-		GFF4870	0.85	-1.0
4,857,546	-		GFF4870	0.86	-0.4
4,857,555	-		GFF4870	0.86	+0.7
4,857,562	-		GFF4870	0.87	+0.9
4,857,564	+		GFF4870	0.87	-0.7
4,857,564	+		GFF4870	0.87	-0.4
4,857,564	+		GFF4870	0.87	-1.8
4,857,564	+		GFF4870	0.87	+0.4
4,857,564	+		GFF4870	0.87	+1.0
4,857,564	+		GFF4870	0.87	-0.5
4,857,564	+		GFF4870	0.87	-0.7
4,857,564	+		GFF4870	0.87	-0.2
4,857,567	-		GFF4870	0.88	+0.3
4,857,572	-		GFF4870	0.88	-0.1
4,857,572	-		GFF4870	0.88	-1.9
4,857,572	-		GFF4870	0.88	+0.2
4,857,572	-		GFF4870	0.88	+0.0
4,857,572	-		GFF4870	0.88	+0.5
4,857,572	-		GFF4870	0.88	-0.8
4,857,581	+		GFF4870	0.89	+0.6
4,857,632	-				+2.7
4,857,659	-				+0.3
4,857,659	-				-0.3
4,857,659	-				+0.3
4,857,661	+				-0.0
4,857,661	+				+0.3
4,857,661	+				+0.7
4,857,661	+				+0.2
4,857,661	+				-0.2
4,857,661	+				-0.8
4,857,661	+				+0.7
4,857,661	+				+0.4
4,857,661	+				-1.0
4,857,661	+				+0.3
4,857,661	+				+0.1
4,857,666	+				-0.8
4,857,666	+				+0.0
4,857,666	+				+0.2
4,857,666	+				+0.4
4,857,668	+				+0.9
4,857,668	+				-1.7
4,857,668	+				+1.1
4,857,668	+				-1.4
4,857,669	-				+0.3
4,857,669	-				+0.3
4,857,669	-				-0.3
4,857,669	-				-1.4
4,857,669	-				+0.8
4,857,669	-				+0.1
4,857,669	-				-0.6
4,857,673	+				-0.4
4,857,673	+				+0.6
4,857,674	-				+1.6
4,857,674	-				+0.2
4,857,674	-				-0.3
4,857,676	-				-0.6
4,857,676	-				+0.8
4,857,676	-				-1.1
4,857,681	-				+0.8
4,857,682	+				-1.2
4,857,690	-				-0.2
4,857,690	-				+0.2
4,857,690	-				-1.0
4,857,690	-				-0.9
4,857,690	-				-0.3
4,857,690	-				+1.0
4,857,690	-				+0.6
4,857,690	-				-0.4
4,857,690	-				-0.0
4,857,690	-				-1.5
4,857,692	+				+1.2
4,857,700	-				-1.4
4,857,716	+				-1.3
4,857,716	+				-0.4
4,857,716	+				+0.7
4,857,724	+				-0.7
4,857,724	+				-0.4
4,857,724	-				-0.0
4,857,724	-				-0.5
4,857,724	-				+0.3
4,857,724	-				-0.7
4,857,731	-		GFF4871	0.11	+0.6
4,857,746	-		GFF4871	0.15	+0.9
4,857,746	-		GFF4871	0.15	-0.1
4,857,751	-		GFF4871	0.16	+0.9
4,857,767	+		GFF4871	0.20	-1.2
4,857,773	+		GFF4871	0.21	+0.3
4,857,781	-		GFF4871	0.23	-0.5
4,857,789	-		GFF4871	0.25	-0.1
4,857,817	-		GFF4871	0.32	+0.9
4,857,845	-		GFF4871	0.39	+1.1
4,857,883	+		GFF4871	0.48	-0.3
4,857,883	+		GFF4871	0.48	+0.7
4,857,883	+		GFF4871	0.48	+0.6
4,857,891	-		GFF4871	0.50	+0.6
4,857,914	+		GFF4871	0.55	-0.6
4,857,941	+		GFF4871	0.62	-0.1
4,857,958	+		GFF4871	0.66	-1.4
4,857,966	-		GFF4871	0.68	+0.1
4,857,966	-		GFF4871	0.68	-0.2
4,857,968	+		GFF4871	0.68	+0.7
4,857,968	+		GFF4871	0.68	-0.9
4,857,968	+		GFF4871	0.68	-0.6
4,857,968	+		GFF4871	0.68	-0.8
4,857,976	-		GFF4871	0.70	-0.3
4,858,016	-		GFF4871	0.80	+0.7
4,858,045	-		GFF4871	0.87	-1.5
4,858,049	+		GFF4871	0.88	+0.8
4,858,049	+		GFF4871	0.88	-0.1
4,858,087	-				-0.5
4,858,100	-				-2.3
4,858,110	-				+0.1
4,858,229	-				-1.3
4,858,265	+				-0.3
4,858,265	+				-0.5
4,858,265	+				+0.8
4,858,265	+				+1.7
4,858,265	+				+0.3
4,858,265	+				-1.2
4,858,273	-				-0.1
4,858,273	-				+0.1
4,858,273	-				-0.5
4,858,273	-				+0.1
4,858,273	-				-2.2
4,858,273	-				+0.5
4,858,273	-				-2.4
4,858,292	+		GFF4872	0.11	+0.9
4,858,313	+		GFF4872	0.12	+0.1
4,858,339	+		GFF4872	0.13	+0.8
4,858,345	+		GFF4872	0.14	+0.3
4,858,345	+		GFF4872	0.14	-1.0
4,858,350	+		GFF4872	0.14	-0.1
4,858,353	-		GFF4872	0.14	-0.3
4,858,360	-		GFF4872	0.15	-1.7
4,858,373	+		GFF4872	0.16	+0.4
4,858,381	-		GFF4872	0.16	+0.3
4,858,386	-		GFF4872	0.16	+0.6
4,858,391	-		GFF4872	0.17	-1.0
4,858,396	-		GFF4872	0.17	+1.0
4,858,445	+		GFF4872	0.20	+0.2
4,858,463	+		GFF4872	0.21	+0.9
4,858,488	+		GFF4872	0.22	-2.0
4,858,496	-		GFF4872	0.23	+0.3
4,858,496	-		GFF4872	0.23	+1.4
4,858,507	+		GFF4872	0.23	-0.7
4,858,543	-		GFF4872	0.26	+0.3
4,858,543	-		GFF4872	0.26	-0.1
4,858,570	-		GFF4872	0.27	-0.2
4,858,570	-		GFF4872	0.27	+0.1
4,858,571	+		GFF4872	0.27	+2.7
4,858,571	+		GFF4872	0.27	-0.6
4,858,579	-		GFF4872	0.28	-1.0
4,858,596	+		GFF4872	0.29	-1.3
4,858,596	+		GFF4872	0.29	+0.2
4,858,597	-		GFF4872	0.29	+0.2
4,858,597	-		GFF4872	0.29	+1.6
4,858,601	+		GFF4872	0.29	+0.1
4,858,626	+		GFF4872	0.31	-0.6
4,858,626	+		GFF4872	0.31	+0.4
4,858,626	+		GFF4872	0.31	+0.7
4,858,631	+		GFF4872	0.31	+0.4
4,858,634	-		GFF4872	0.31	+0.9
4,858,634	-		GFF4872	0.31	-0.9
4,858,634	-		GFF4872	0.31	-1.9
4,858,634	-		GFF4872	0.31	+1.3
4,858,634	-		GFF4872	0.31	-0.4
4,858,639	-		GFF4872	0.31	-0.1
4,858,643	+		GFF4872	0.32	+0.3
4,858,651	-		GFF4872	0.32	+0.2
4,858,651	-		GFF4872	0.32	+0.2
4,858,651	-		GFF4872	0.32	+0.6