Strain Fitness in Sphingobium sp. HT1-2 around GFF4815

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,801,277	+		GFF4812	0.31	+0.4
4,801,277	+		GFF4812	0.31	-1.3
4,801,285	-		GFF4812	0.37	-1.9
4,801,286	-		GFF4812	0.37	+1.0
4,801,301	-		GFF4812	0.47	-0.1
4,801,326	+		GFF4812	0.63	-0.2
4,801,334	-		GFF4812	0.69	-1.4
4,801,344	-		GFF4812	0.75	-0.9
4,801,360	-		GFF4812	0.86	+0.3
4,801,374	+				-1.9
4,801,376	+				+0.5
4,801,384	+				-0.0
4,801,419	+				-0.4
4,801,422	+				+0.5
4,801,427	-				-0.1
4,801,482	+				-0.7
4,801,520	+				-0.6
4,801,520	+				+0.7
4,801,520	+				-0.1
4,801,520	+				+0.5
4,801,523	-				-0.6
4,801,528	-				+0.4
4,801,528	-				+1.1
4,801,528	-				+0.6
4,801,528	-				-0.2
4,801,528	-				-0.1
4,801,528	-				+0.8
4,801,535	+				-0.1
4,801,539	-				+0.2
4,801,565	-				+0.7
4,801,568	+				-0.7
4,801,571	-				-0.8
4,801,579	-				-0.1
4,801,630	-				+0.4
4,801,670	+				+1.5
4,801,679	+				-2.1
4,801,689	+				-0.1
4,801,700	+				-0.3
4,801,700	+				+0.9
4,801,706	-				-1.1
4,801,706	-				-0.4
4,801,708	-				-0.9
4,801,714	-				-0.9
4,801,776	+				-0.4
4,801,808	+		GFF4813	0.20	-1.9
4,801,808	+		GFF4813	0.20	-0.9
4,801,824	+		GFF4813	0.31	+0.9
4,801,838	-		GFF4813	0.41	+0.5
4,801,844	+		GFF4813	0.45	-0.3
4,801,844	+		GFF4813	0.45	-0.4
4,801,844	+		GFF4813	0.45	-1.6
4,801,844	+		GFF4813	0.45	+0.4
4,801,844	+		GFF4813	0.45	-1.0
4,801,844	+		GFF4813	0.45	-0.9
4,801,844	+		GFF4813	0.45	+0.1
4,801,844	+		GFF4813	0.45	-0.0
4,801,849	+		GFF4813	0.48	-0.5
4,801,852	-		GFF4813	0.50	+1.2
4,801,852	-		GFF4813	0.50	-1.2
4,801,854	+		GFF4813	0.52	-0.8
4,801,854	+		GFF4813	0.52	-2.0
4,801,854	+		GFF4813	0.52	-0.1
4,801,917	-				+0.8
4,801,922	-				-2.9
4,801,923	+				-1.2
4,801,929	-				-0.6
4,801,929	-				-1.3
4,801,931	-				-0.6
4,801,953	+				+0.5
4,801,955	+				+0.7
4,801,961	-				+0.4
4,801,999	+		GFF4814	0.14	-0.7
4,802,004	+		GFF4814	0.17	-1.7
4,802,012	-		GFF4814	0.21	-1.2
4,802,014	+		GFF4814	0.22	-2.1
4,802,014	+		GFF4814	0.22	-0.8
4,802,022	-		GFF4814	0.26	-0.5
4,802,039	-		GFF4814	0.35	-0.6
4,802,057	+		GFF4814	0.44	-1.1
4,802,065	-		GFF4814	0.48	+1.0
4,802,130	+		GFF4814	0.82	-1.2
4,802,160	-				+1.1
4,802,167	+				-2.9
4,802,168	+				-0.8
4,802,175	-				-0.2
4,802,217	+				-0.2
4,802,217	+				-0.2
4,802,217	+				+0.1
4,802,217	+				+0.6
4,802,225	-				-0.5
4,802,225	-				+0.9
4,802,299	-				+0.2
4,802,299	-				+0.4
4,802,319	+				-2.3
4,802,338	+		GFF4815	0.14	+1.5
4,802,372	+		GFF4815	0.21	-0.3
4,802,380	-		GFF4815	0.22	+0.5
4,802,380	-		GFF4815	0.22	+0.8
4,802,386	+		GFF4815	0.24	+0.2
4,802,394	-		GFF4815	0.25	-1.2
4,802,394	-		GFF4815	0.25	-1.3
4,802,406	-		GFF4815	0.28	+0.3
4,802,417	-		GFF4815	0.30	-1.1
4,802,419	+		GFF4815	0.31	-0.7
4,802,422	-		GFF4815	0.31	-0.8
4,802,422	-		GFF4815	0.31	+0.4
4,802,425	-		GFF4815	0.32	-0.4
4,802,427	-		GFF4815	0.32	+0.9
4,802,477	-		GFF4815	0.43	+0.8
4,802,488	-		GFF4815	0.45	-1.7
4,802,498	-		GFF4815	0.47	+1.1
4,802,499	-		GFF4815	0.47	-0.8
4,802,526	-		GFF4815	0.53	-1.1
4,802,534	+		GFF4815	0.55	+0.3
4,802,534	+		GFF4815	0.55	-2.6
4,802,542	+		GFF4815	0.56	+0.8
4,802,542	+		GFF4815	0.56	+0.3
4,802,542	-		GFF4815	0.56	-0.6
4,802,550	-		GFF4815	0.58	-0.3
4,802,558	+		GFF4815	0.60	-0.2
4,802,566	-		GFF4815	0.61	-0.4
4,802,587	-		GFF4815	0.66	-1.0
4,802,591	+		GFF4815	0.67	+0.1
4,802,656	+		GFF4815	0.80	+0.2
4,802,656	+		GFF4815	0.80	+0.2
4,802,656	+		GFF4815	0.80	-0.9
4,802,664	-		GFF4815	0.82	+0.2
4,802,670	+		GFF4815	0.83	-1.8
4,802,678	+		GFF4815	0.85	-1.1
4,802,678	-		GFF4815	0.85	-0.3
4,802,678	-		GFF4815	0.85	-0.8
4,802,697	+		GFF4815	0.89	+0.1
4,802,738	+				+0.6
4,802,764	-				+0.3
4,802,824	-		GFF4816	0.20	-2.7
4,802,846	+		GFF4816	0.38	+0.8
4,802,846	+		GFF4816	0.38	-1.3
4,802,883	-		GFF4816	0.68	-0.4
4,802,892	+		GFF4816	0.76	-0.4
4,802,915	+				+0.0
4,802,923	-				+0.9
4,802,923	-				+1.0
4,802,923	-				-1.0
4,802,923	-				+0.6
4,802,928	-				-0.3
4,802,971	-				+0.2
4,803,049	+		GFF4817	0.22	-1.6
4,803,049	+		GFF4817	0.22	-0.4
4,803,062	-		GFF4817	0.28	-0.7
4,803,062	-		GFF4817	0.28	-0.8
4,803,071	-		GFF4817	0.33	+1.4
4,803,087	+		GFF4817	0.42	+0.9
4,803,096	-		GFF4817	0.47	-0.1
4,803,108	+		GFF4817	0.53	+0.0
4,803,108	+		GFF4817	0.53	+0.2
4,803,108	+		GFF4817	0.53	+0.1
4,803,160	+		GFF4817	0.81	+0.6
4,803,160	+		GFF4817	0.81	+0.6
4,803,161	-		GFF4817	0.82	-2.7
4,803,164	+		GFF4817	0.83	-0.7
4,803,167	-		GFF4817	0.85	+0.4
4,803,172	-		GFF4817	0.88	-0.1
4,803,213	-				+0.7
4,803,226	-				+0.3
4,803,226	-				+0.7
4,803,261	-				+0.9
4,803,303	-				-0.9
4,803,303	-				+0.8
4,803,311	-				+0.2
4,803,345	+				+0.2
4,803,374	-				-0.5
4,803,392	+				-1.2
4,803,392	+				-2.1
4,803,400	-				+0.0
4,803,401	+				-0.5
4,803,407	+				-0.1
4,803,415	-				+0.0
4,803,422	-		GFF4818	0.10	+0.6
4,803,434	-		GFF4818	0.11	+0.5
4,803,461	+		GFF4818	0.14	-0.0
4,803,468	+		GFF4818	0.15	+0.4
4,803,468	+		GFF4818	0.15	-0.5
4,803,472	+		GFF4818	0.15	-0.6
4,803,476	-		GFF4818	0.15	-0.5
4,803,476	-		GFF4818	0.15	-1.2
4,803,524	+		GFF4818	0.20	+0.9
4,803,524	+		GFF4818	0.20	+0.0
4,803,527	-		GFF4818	0.20	-0.4
4,803,532	-		GFF4818	0.21	-0.8
4,803,539	+		GFF4818	0.21	-0.6
4,803,549	-		GFF4818	0.22	+0.1
4,803,571	+		GFF4818	0.24	-0.1
4,803,615	-		GFF4818	0.28	-0.6
4,803,615	-		GFF4818	0.28	+0.2
4,803,647	+		GFF4818	0.31	-0.4
4,803,649	+		GFF4818	0.32	+0.2
4,803,649	+		GFF4818	0.32	-0.5
4,803,649	+		GFF4818	0.32	+0.7
4,803,649	+		GFF4818	0.32	+0.1
4,803,651	+		GFF4818	0.32	+0.7
4,803,651	+		GFF4818	0.32	-1.5
4,803,651	+		GFF4818	0.32	-1.4
4,803,651	+		GFF4818	0.32	+1.6
4,803,657	-		GFF4818	0.32	-0.1
4,803,657	-		GFF4818	0.32	+0.1
4,803,659	-		GFF4818	0.33	-0.5
4,803,679	+		GFF4818	0.34	-0.3
4,803,705	+		GFF4818	0.37	+0.1
4,803,716	+		GFF4818	0.38	+0.3
4,803,724	-		GFF4818	0.39	-1.2
4,803,741	-		GFF4818	0.40	-1.6