Strain Fitness in Sphingobium sp. HT1-2 around GFF461

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF460 and GFF461 are separated by 14 nucleotidesGFF461 and GFF462 are separated by 125 nucleotides GFF460 - Transcriptional regulator, AraC family, at 459,127 to 460,113 GFF460 GFF461 - Enoyl-CoA hydratase/isomerase, at 460,128 to 461,105 GFF461 GFF462 - Transcriptional regulator, AraC family, at 461,231 to 462,280 GFF462 Position (kb) 460 461 462Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 459.133 kb on - strandat 459.133 kb on - strandat 459.133 kb on - strandat 459.133 kb on - strandat 459.242 kb on + strand, within GFF460at 459.267 kb on - strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.290 kb on + strand, within GFF460at 459.298 kb on - strand, within GFF460at 459.298 kb on - strand, within GFF460at 459.298 kb on - strand, within GFF460at 459.298 kb on - strand, within GFF460at 459.304 kb on - strand, within GFF460at 459.304 kb on - strand, within GFF460at 459.304 kb on - strand, within GFF460at 459.309 kb on - strand, within GFF460at 459.314 kb on - strand, within GFF460at 459.321 kb on + strand, within GFF460at 459.357 kb on + strand, within GFF460at 459.394 kb on + strand, within GFF460at 459.402 kb on - strand, within GFF460at 459.428 kb on - strand, within GFF460at 459.443 kb on - strand, within GFF460at 459.459 kb on + strand, within GFF460at 459.459 kb on + strand, within GFF460at 459.469 kb on - strand, within GFF460at 459.501 kb on - strand, within GFF460at 459.501 kb on - strand, within GFF460at 459.510 kb on + strand, within GFF460at 459.510 kb on + strand, within GFF460at 459.510 kb on + strand, within GFF460at 459.510 kb on + strand, within GFF460at 459.518 kb on - strand, within GFF460at 459.518 kb on - strand, within GFF460at 459.522 kb on + strand, within GFF460at 459.522 kb on + strand, within GFF460at 459.522 kb on + strand, within GFF460at 459.525 kb on - strand, within GFF460at 459.530 kb on - strand, within GFF460at 459.530 kb on - strand, within GFF460at 459.530 kb on - strand, within GFF460at 459.530 kb on - strand, within GFF460at 459.541 kb on - strand, within GFF460at 459.552 kb on + strand, within GFF460at 459.560 kb on - strand, within GFF460at 459.601 kb on - strand, within GFF460at 459.605 kb on - strand, within GFF460at 459.615 kb on - strand, within GFF460at 459.620 kb on - strand, within GFF460at 459.628 kb on + strand, within GFF460at 459.655 kb on + strand, within GFF460at 459.655 kb on + strand, within GFF460at 459.696 kb on + strand, within GFF460at 459.696 kb on + strand, within GFF460at 459.696 kb on + strand, within GFF460at 459.696 kb on + strand, within GFF460at 459.703 kb on + strand, within GFF460at 459.703 kb on + strand, within GFF460at 459.704 kb on - strand, within GFF460at 459.704 kb on - strand, within GFF460at 459.704 kb on - strand, within GFF460at 459.704 kb on - strand, within GFF460at 459.704 kb on - strand, within GFF460at 459.711 kb on - strand, within GFF460at 459.716 kb on + strand, within GFF460at 459.718 kb on + strand, within GFF460at 459.719 kb on - strand, within GFF460at 459.721 kb on - strand, within GFF460at 459.734 kb on - strand, within GFF460at 459.769 kb on + strand, within GFF460at 459.769 kb on + strand, within GFF460at 459.773 kb on - strand, within GFF460at 459.777 kb on - strand, within GFF460at 459.828 kb on + strand, within GFF460at 459.828 kb on + strand, within GFF460at 459.841 kb on - strand, within GFF460at 459.842 kb on + strand, within GFF460at 459.855 kb on - strand, within GFF460at 459.862 kb on + strand, within GFF460at 459.862 kb on + strand, within GFF460at 459.867 kb on + strand, within GFF460at 459.869 kb on + strand, within GFF460at 459.870 kb on - strand, within GFF460at 459.870 kb on - strand, within GFF460at 459.871 kb on + strand, within GFF460at 459.876 kb on + strand, within GFF460at 459.877 kb on + strand, within GFF460at 459.881 kb on + strand, within GFF460at 459.881 kb on + strand, within GFF460at 459.884 kb on - strand, within GFF460at 459.884 kb on - strand, within GFF460at 459.906 kb on - strand, within GFF460at 459.906 kb on - strand, within GFF460at 459.908 kb on - strand, within GFF460at 459.968 kb on + strand, within GFF460at 459.968 kb on + strand, within GFF460at 459.976 kb on - strand, within GFF460at 459.976 kb on - strand, within GFF460at 459.976 kb on - strand, within GFF460at 459.976 kb on - strand, within GFF460at 459.976 kb on - strand, within GFF460at 459.981 kb on + strand, within GFF460at 459.989 kb on - strand, within GFF460at 460.002 kb on - strand, within GFF460at 460.013 kb on - strand, within GFF460at 460.086 kb on + strandat 460.132 kb on - strandat 460.132 kb on - strandat 460.134 kb on - strandat 460.136 kb on + strandat 460.144 kb on - strandat 460.179 kb on - strandat 460.222 kb on - strandat 460.222 kb on - strandat 460.235 kb on + strand, within GFF461at 460.260 kb on + strand, within GFF461at 460.266 kb on - strand, within GFF461at 460.291 kb on + strand, within GFF461at 460.335 kb on + strand, within GFF461at 460.446 kb on + strand, within GFF461at 460.463 kb on + strand, within GFF461at 460.480 kb on + strand, within GFF461at 460.562 kb on + strand, within GFF461at 460.657 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.768 kb on - strand, within GFF461at 460.790 kb on - strand, within GFF461at 460.802 kb on + strand, within GFF461at 460.848 kb on + strand, within GFF461at 460.975 kb on - strand, within GFF461at 460.987 kb on + strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 461.006 kb on + strand, within GFF461at 461.068 kb on + strandat 461.082 kb on - strandat 461.090 kb on + strandat 461.090 kb on + strandat 461.098 kb on - strandat 461.100 kb on + strandat 461.108 kb on - strandat 461.123 kb on + strandat 461.131 kb on - strandat 461.187 kb on - strandat 461.229 kb on - strandat 461.346 kb on + strand, within GFF462at 461.351 kb on + strand, within GFF462at 461.374 kb on + strand, within GFF462at 461.379 kb on + strand, within GFF462at 461.393 kb on + strand, within GFF462at 461.402 kb on + strand, within GFF462at 461.479 kb on + strand, within GFF462at 461.484 kb on + strand, within GFF462at 461.527 kb on + strand, within GFF462at 461.529 kb on + strand, within GFF462at 461.550 kb on + strand, within GFF462at 461.550 kb on + strand, within GFF462at 461.555 kb on + strand, within GFF462at 461.558 kb on - strand, within GFF462at 461.629 kb on + strand, within GFF462at 461.629 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.654 kb on - strand, within GFF462at 461.654 kb on - strand, within GFF462at 461.656 kb on - strand, within GFF462at 461.695 kb on + strand, within GFF462at 461.747 kb on + strand, within GFF462at 461.787 kb on + strand, within GFF462at 461.795 kb on - strand, within GFF462at 461.811 kb on + strand, within GFF462at 461.814 kb on - strand, within GFF462at 461.814 kb on - strand, within GFF462at 461.819 kb on - strand, within GFF462at 461.819 kb on - strand, within GFF462at 461.822 kb on + strand, within GFF462at 461.827 kb on + strand, within GFF462at 461.835 kb on - strand, within GFF462at 461.854 kb on + strand, within GFF462at 461.854 kb on + strand, within GFF462at 461.862 kb on - strand, within GFF462at 461.927 kb on - strand, within GFF462at 461.947 kb on - strand, within GFF462at 461.999 kb on - strand, within GFF462at 462.032 kb on + strand, within GFF462at 462.032 kb on + strand, within GFF462at 462.037 kb on + strand, within GFF462at 462.051 kb on + strand, within GFF462at 462.101 kb on - strand, within GFF462

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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459,133 - +0.2
459,133 - +0.5
459,133 - -0.2
459,133 - -0.8
459,242 + GFF460 0.12 -0.8
459,267 - GFF460 0.14 -0.2
459,290 + GFF460 0.17 -0.4
459,290 + GFF460 0.17 +0.3
459,290 + GFF460 0.17 -0.0
459,290 + GFF460 0.17 +0.1
459,290 + GFF460 0.17 +0.4
459,290 + GFF460 0.17 -0.1
459,290 + GFF460 0.17 +0.3
459,298 - GFF460 0.17 +0.8
459,298 - GFF460 0.17 +1.3
459,298 - GFF460 0.17 +0.2
459,298 - GFF460 0.17 -0.2
459,304 - GFF460 0.18 -0.1
459,304 - GFF460 0.18 +1.2
459,304 - GFF460 0.18 +0.7
459,309 - GFF460 0.18 -1.3
459,314 - GFF460 0.19 -1.7
459,321 + GFF460 0.20 -0.4
459,357 + GFF460 0.23 -0.4
459,394 + GFF460 0.27 +0.3
459,402 - GFF460 0.28 +0.5
459,428 - GFF460 0.30 -0.6
459,443 - GFF460 0.32 -0.6
459,459 + GFF460 0.34 +0.6
459,459 + GFF460 0.34 +0.2
459,469 - GFF460 0.35 +0.7
459,501 - GFF460 0.38 -1.9
459,501 - GFF460 0.38 +1.6
459,510 + GFF460 0.39 +0.2
459,510 + GFF460 0.39 -0.4
459,510 + GFF460 0.39 +0.7
459,510 + GFF460 0.39 -1.2
459,518 - GFF460 0.40 -0.2
459,518 - GFF460 0.40 +0.3
459,522 + GFF460 0.40 +0.2
459,522 + GFF460 0.40 +0.4
459,522 + GFF460 0.40 +1.2
459,525 - GFF460 0.40 +1.2
459,530 - GFF460 0.41 -2.0
459,530 - GFF460 0.41 +0.6
459,530 - GFF460 0.41 -1.5
459,530 - GFF460 0.41 -0.3
459,541 - GFF460 0.42 -0.4
459,552 + GFF460 0.43 +0.5
459,560 - GFF460 0.44 +0.7
459,601 - GFF460 0.48 -0.4
459,605 - GFF460 0.48 -0.7
459,615 - GFF460 0.49 -2.5
459,620 - GFF460 0.50 -1.2
459,628 + GFF460 0.51 +0.4
459,655 + GFF460 0.53 +1.0
459,655 + GFF460 0.53 +0.9
459,696 + GFF460 0.58 -1.0
459,696 + GFF460 0.58 +1.3
459,696 + GFF460 0.58 +1.8
459,696 + GFF460 0.58 +0.4
459,703 + GFF460 0.58 +1.0
459,703 + GFF460 0.58 +0.3
459,704 - GFF460 0.58 -0.3
459,704 - GFF460 0.58 -1.2
459,704 - GFF460 0.58 +0.2
459,704 - GFF460 0.58 +1.6
459,704 - GFF460 0.58 -0.3
459,711 - GFF460 0.59 -1.8
459,716 + GFF460 0.60 +0.6
459,718 + GFF460 0.60 +0.4
459,719 - GFF460 0.60 +1.0
459,721 - GFF460 0.60 -0.5
459,734 - GFF460 0.61 +0.6
459,769 + GFF460 0.65 +0.6
459,769 + GFF460 0.65 -0.0
459,773 - GFF460 0.65 +2.4
459,777 - GFF460 0.66 -1.2
459,828 + GFF460 0.71 -1.8
459,828 + GFF460 0.71 +0.4
459,841 - GFF460 0.72 -0.0
459,842 + GFF460 0.72 -0.3
459,855 - GFF460 0.74 +0.8
459,862 + GFF460 0.74 -0.3
459,862 + GFF460 0.74 +0.3
459,867 + GFF460 0.75 +1.4
459,869 + GFF460 0.75 -0.5
459,870 - GFF460 0.75 -0.6
459,870 - GFF460 0.75 +0.2
459,871 + GFF460 0.75 +0.1
459,876 + GFF460 0.76 +0.5
459,877 + GFF460 0.76 +0.4
459,881 + GFF460 0.76 +0.4
459,881 + GFF460 0.76 -1.3
459,884 - GFF460 0.77 -0.5
459,884 - GFF460 0.77 +0.8
459,906 - GFF460 0.79 +1.8
459,906 - GFF460 0.79 -0.4
459,908 - GFF460 0.79 +1.2
459,968 + GFF460 0.85 -0.6
459,968 + GFF460 0.85 +0.9
459,976 - GFF460 0.86 +0.1
459,976 - GFF460 0.86 -0.2
459,976 - GFF460 0.86 +0.8
459,976 - GFF460 0.86 -0.5
459,976 - GFF460 0.86 +1.2
459,981 + GFF460 0.87 -1.1
459,989 - GFF460 0.87 +0.3
460,002 - GFF460 0.89 +0.2
460,013 - GFF460 0.90 +0.5
460,086 + -0.9
460,132 - -1.9
460,132 - +0.5
460,134 - -1.6
460,136 + -0.4
460,144 - +1.2
460,179 - +0.2
460,222 - +0.6
460,222 - -0.1
460,235 + GFF461 0.11 +0.9
460,260 + GFF461 0.13 +0.6
460,266 - GFF461 0.14 -0.2
460,291 + GFF461 0.17 +0.7
460,335 + GFF461 0.21 +0.1
460,446 + GFF461 0.33 +0.3
460,463 + GFF461 0.34 +0.4
460,480 + GFF461 0.36 -1.9
460,562 + GFF461 0.44 +0.2
460,657 + GFF461 0.54 +0.2
460,717 + GFF461 0.60 -1.1
460,717 + GFF461 0.60 -1.9
460,717 + GFF461 0.60 +0.7
460,717 + GFF461 0.60 +0.3
460,768 - GFF461 0.65 +1.1
460,790 - GFF461 0.68 +0.9
460,802 + GFF461 0.69 -0.8
460,848 + GFF461 0.74 +2.0
460,975 - GFF461 0.87 +0.4
460,987 + GFF461 0.88 -1.2
460,995 - GFF461 0.89 -0.9
460,995 - GFF461 0.89 -1.2
460,995 - GFF461 0.89 -0.4
460,995 - GFF461 0.89 +0.2
461,006 + GFF461 0.90 +1.6
461,068 + -1.7
461,082 - -1.0
461,090 + -0.4
461,090 + -3.2
461,098 - -0.5
461,100 + +0.2
461,108 - -0.1
461,123 + -0.3
461,131 - -0.6
461,187 - -0.3
461,229 - +0.2
461,346 + GFF462 0.11 -0.0
461,351 + GFF462 0.11 +0.7
461,374 + GFF462 0.14 +0.7
461,379 + GFF462 0.14 -0.8
461,393 + GFF462 0.15 +0.4
461,402 + GFF462 0.16 -0.6
461,479 + GFF462 0.24 +0.1
461,484 + GFF462 0.24 -0.4
461,527 + GFF462 0.28 -1.0
461,529 + GFF462 0.28 +0.3
461,550 + GFF462 0.30 +1.8
461,550 + GFF462 0.30 -0.4
461,555 + GFF462 0.31 +0.2
461,558 - GFF462 0.31 -0.8
461,629 + GFF462 0.38 +0.1
461,629 + GFF462 0.38 +0.7
461,646 + GFF462 0.40 +0.4
461,646 + GFF462 0.40 -0.5
461,646 + GFF462 0.40 +0.6
461,654 - GFF462 0.40 -1.5
461,654 - GFF462 0.40 -1.3
461,656 - GFF462 0.40 -0.2
461,695 + GFF462 0.44 -2.5
461,747 + GFF462 0.49 -0.8
461,787 + GFF462 0.53 +0.3
461,795 - GFF462 0.54 -0.3
461,811 + GFF462 0.55 +0.2
461,814 - GFF462 0.56 -1.1
461,814 - GFF462 0.56 -1.2
461,819 - GFF462 0.56 +0.4
461,819 - GFF462 0.56 +0.0
461,822 + GFF462 0.56 -2.6
461,827 + GFF462 0.57 -0.1
461,835 - GFF462 0.58 -2.0
461,854 + GFF462 0.59 -0.3
461,854 + GFF462 0.59 +0.6
461,862 - GFF462 0.60 +0.1
461,927 - GFF462 0.66 -0.2
461,947 - GFF462 0.68 -1.6
461,999 - GFF462 0.73 +0.5
462,032 + GFF462 0.76 -1.2
462,032 + GFF462 0.76 +0.2
462,037 + GFF462 0.77 -0.0
462,051 + GFF462 0.78 +0.2
462,101 - GFF462 0.83 +1.0

Or see this region's nucleotide sequence