Strain Fitness in Sphingobium sp. HT1-2 around GFF4604

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,596,552	-		GFF4603	0.40	-1.2
4,596,552	-		GFF4603	0.40	-1.5
4,596,558	+		GFF4603	0.41	-0.3
4,596,581	+		GFF4603	0.42	+0.3
4,596,581	+		GFF4603	0.42	-0.3
4,596,581	+		GFF4603	0.42	+1.5
4,596,584	-		GFF4603	0.42	-0.1
4,596,589	-		GFF4603	0.43	+0.4
4,596,589	-		GFF4603	0.43	-1.1
4,596,589	-		GFF4603	0.43	-0.5
4,596,604	+		GFF4603	0.43	-0.3
4,596,611	+		GFF4603	0.44	-1.3
4,596,625	-		GFF4603	0.45	+0.5
4,596,644	+		GFF4603	0.46	-2.2
4,596,663	-		GFF4603	0.47	-0.8
4,596,673	+		GFF4603	0.48	+0.2
4,596,681	+		GFF4603	0.48	-0.9
4,596,688	+		GFF4603	0.49	+0.3
4,596,691	+		GFF4603	0.49	+0.8
4,596,696	+		GFF4603	0.49	+0.3
4,596,696	+		GFF4603	0.49	+1.3
4,596,699	-		GFF4603	0.49	-1.9
4,596,765	-		GFF4603	0.54	-0.1
4,596,782	+		GFF4603	0.55	+0.1
4,596,803	+		GFF4603	0.56	-0.6
4,596,803	+		GFF4603	0.56	+0.2
4,596,803	+		GFF4603	0.56	+0.6
4,596,822	+		GFF4603	0.57	-1.1
4,596,827	+		GFF4603	0.57	-0.1
4,596,830	-		GFF4603	0.58	-0.8
4,596,832	-		GFF4603	0.58	-2.4
4,596,852	+		GFF4603	0.59	+0.9
4,596,852	+		GFF4603	0.59	+0.3
4,596,852	-		GFF4603	0.59	-0.6
4,596,948	+		GFF4603	0.65	-0.1
4,596,956	-		GFF4603	0.65	-0.2
4,596,958	+		GFF4603	0.66	+1.7
4,596,958	-		GFF4603	0.66	+2.1
4,596,963	-		GFF4603	0.66	+1.3
4,597,047	-		GFF4603	0.71	-0.5
4,597,086	+		GFF4603	0.74	-0.7
4,597,094	-		GFF4603	0.74	+0.9
4,597,135	+		GFF4603	0.77	-0.7
4,597,135	+		GFF4603	0.77	+0.0
4,597,135	+		GFF4603	0.77	-2.1
4,597,188	+		GFF4603	0.80	-0.5
4,597,196	-		GFF4603	0.80	+0.2
4,597,222	+		GFF4603	0.82	-1.0
4,597,230	-		GFF4603	0.83	-1.2
4,597,244	-		GFF4603	0.83	-0.4
4,597,245	-		GFF4603	0.84	-0.4
4,597,267	+		GFF4603	0.85	-1.6
4,597,330	-		GFF4603	0.89	-0.1
4,597,351	-				-1.0
4,597,361	-				-1.5
4,597,361	-				-0.9
4,597,363	+				-0.3
4,597,376	-				-1.2
4,597,376	-				+0.7
4,597,376	-				-0.4
4,597,376	-				-1.6
4,597,376	-				-1.1
4,597,394	+				+0.4
4,597,446	+				-0.2
4,597,488	+				+0.2
4,597,518	+				+0.1
4,597,524	-				+0.7
4,597,576	-				-0.1
4,597,579	+				-0.4
4,597,599	+				-0.1
4,597,634	+				-1.8
4,597,638	+				-0.4
4,597,641	-				-0.2
4,597,656	-		GFF4604	0.10	+0.0
4,597,656	-		GFF4604	0.10	-0.3
4,597,674	+		GFF4604	0.12	+0.4
4,597,677	-		GFF4604	0.12	+0.5
4,597,679	+		GFF4604	0.12	-1.3
4,597,680	+		GFF4604	0.12	-0.7
4,597,682	-		GFF4604	0.12	-0.4
4,597,687	-		GFF4604	0.13	-0.1
4,597,688	-		GFF4604	0.13	+1.0
4,597,688	-		GFF4604	0.13	-1.4
4,597,688	-		GFF4604	0.13	+0.2
4,597,688	-		GFF4604	0.13	-1.8
4,597,688	-		GFF4604	0.13	-0.5
4,597,725	-		GFF4604	0.15	+0.2
4,597,749	+		GFF4604	0.17	+0.1
4,597,773	+		GFF4604	0.19	+0.1
4,597,773	+		GFF4604	0.19	-1.8
4,597,781	-		GFF4604	0.19	+0.1
4,597,788	+		GFF4604	0.20	+0.4
4,597,835	-		GFF4604	0.23	-0.8
4,597,835	-		GFF4604	0.23	-1.1
4,597,849	+		GFF4604	0.24	-1.3
4,597,910	+		GFF4604	0.28	+0.7
4,597,910	+		GFF4604	0.28	+0.3
4,597,910	+		GFF4604	0.28	+0.3
4,597,911	+		GFF4604	0.28	-0.2
4,597,918	-		GFF4604	0.29	-1.2
4,597,918	-		GFF4604	0.29	-1.7
4,597,927	+		GFF4604	0.30	+0.0
4,597,935	-		GFF4604	0.30	+0.8
4,597,942	+		GFF4604	0.31	-0.1
4,597,946	+		GFF4604	0.31	-0.2
4,597,950	-		GFF4604	0.31	-0.7
4,597,950	-		GFF4604	0.31	+0.5
4,597,950	-		GFF4604	0.31	-0.8
4,597,972	-		GFF4604	0.33	+1.4
4,597,973	-		GFF4604	0.33	-0.8
4,597,974	-		GFF4604	0.33	-0.8
4,598,042	+		GFF4604	0.38	+0.9
4,598,050	-		GFF4604	0.38	-0.9
4,598,055	-		GFF4604	0.39	-0.1
4,598,086	+		GFF4604	0.41	-0.3
4,598,091	+		GFF4604	0.41	-0.6
4,598,094	-		GFF4604	0.41	+1.9
4,598,099	-		GFF4604	0.42	-0.2
4,598,186	-		GFF4604	0.48	-0.6
4,598,189	+		GFF4604	0.48	-0.9
4,598,189	+		GFF4604	0.48	+0.4
4,598,189	+		GFF4604	0.48	-1.2
4,598,189	+		GFF4604	0.48	-0.5
4,598,197	-		GFF4604	0.49	-1.0
4,598,197	-		GFF4604	0.49	+0.1
4,598,197	-		GFF4604	0.49	+0.5
4,598,249	+		GFF4604	0.52	-1.6
4,598,260	+		GFF4604	0.53	-0.4
4,598,267	+		GFF4604	0.54	+1.0
4,598,270	-		GFF4604	0.54	-0.1
4,598,290	-		GFF4604	0.55	+0.6
4,598,298	-		GFF4604	0.56	+0.8
4,598,305	-		GFF4604	0.56	+2.1
4,598,305	-		GFF4604	0.56	-0.4
4,598,322	+		GFF4604	0.57	-0.9
4,598,322	+		GFF4604	0.57	+0.3
4,598,322	+		GFF4604	0.57	-0.9
4,598,322	+		GFF4604	0.57	-0.4
4,598,322	+		GFF4604	0.57	-1.3
4,598,322	+		GFF4604	0.57	-1.0
4,598,322	+		GFF4604	0.57	+0.2
4,598,330	-		GFF4604	0.58	-0.1
4,598,330	-		GFF4604	0.58	-0.9
4,598,330	-		GFF4604	0.58	+0.4
4,598,330	-		GFF4604	0.58	-0.5
4,598,330	-		GFF4604	0.58	+1.0
4,598,330	-		GFF4604	0.58	-0.2
4,598,330	-		GFF4604	0.58	-0.5
4,598,330	-		GFF4604	0.58	+0.8
4,598,330	-		GFF4604	0.58	+0.2
4,598,330	-		GFF4604	0.58	+0.3
4,598,330	-		GFF4604	0.58	+0.8
4,598,330	-		GFF4604	0.58	-0.6
4,598,330	-		GFF4604	0.58	+0.2
4,598,330	-		GFF4604	0.58	+0.0
4,598,330	-		GFF4604	0.58	-3.0
4,598,330	-		GFF4604	0.58	-0.5
4,598,330	-		GFF4604	0.58	+0.8
4,598,330	-		GFF4604	0.58	-0.1
4,598,335	-		GFF4604	0.58	-0.4
4,598,340	-		GFF4604	0.59	+0.7
4,598,340	-		GFF4604	0.59	-0.1
4,598,340	-		GFF4604	0.59	+0.4
4,598,342	-		GFF4604	0.59	+1.2
4,598,397	-		GFF4604	0.63	+0.2
4,598,428	+		GFF4604	0.65	-1.4
4,598,474	-		GFF4604	0.68	+1.2
4,598,474	-		GFF4604	0.68	+0.6
4,598,474	-		GFF4604	0.68	-0.1
4,598,474	-		GFF4604	0.68	+0.0
4,598,474	-		GFF4604	0.68	-2.7
4,598,508	+		GFF4604	0.71	-0.4
4,598,512	-		GFF4604	0.71	-0.1
4,598,534	+		GFF4604	0.72	+0.6
4,598,544	+		GFF4604	0.73	-1.2
4,598,623	+		GFF4604	0.79	-1.2
4,598,675	+		GFF4604	0.82	-1.1
4,598,680	+		GFF4604	0.83	-0.2
4,598,680	+		GFF4604	0.83	-1.4
4,598,688	-		GFF4604	0.83	-0.9
4,598,690	+		GFF4604	0.83	-1.5
4,598,732	+		GFF4604	0.86	-1.3
4,598,772	-		GFF4604	0.89	+0.7
4,598,806	+				-2.6
4,598,821	+				-0.5
4,598,847	+				-1.2
4,598,855	+				+0.5
4,598,865	+				-1.7
4,598,931	+				+0.6
4,598,939	-				+0.1
4,598,939	-				-0.2
4,598,939	-				+0.6
4,598,949	-				-0.2
4,598,964	+				+0.2
4,598,972	-				-0.3
4,598,976	+				+0.5
4,599,015	-				-0.4
4,599,096	+				-0.7
4,599,151	+				+0.7
4,599,177	+				+0.3
4,599,178	+				-0.9
4,599,178	+				-0.9
4,599,178	+				-2.7
4,599,186	-				-0.1
4,599,207	-				-2.5
4,599,217	-				-1.2
4,599,217	-				+1.5
4,599,217	-				-0.7
4,599,217	-				-0.6
4,599,222	-				-1.1
4,599,222	-				-0.7
4,599,248	-		GFF4605	0.10	+0.0
4,599,295	-		GFF4605	0.13	-1.2
4,599,311	+		GFF4605	0.14	-0.7
4,599,311	+		GFF4605	0.14	-0.7
4,599,311	+		GFF4605	0.14	+0.8
4,599,338	+		GFF4605	0.15	-0.7
4,599,338	+		GFF4605	0.15	-1.0
4,599,338	+		GFF4605	0.15	-0.5
4,599,338	+		GFF4605	0.15	+0.6
4,599,375	+		GFF4605	0.17	+0.3
4,599,394	-		GFF4605	0.18	-0.5
4,599,433	-		GFF4605	0.20	-0.3
4,599,437	+		GFF4605	0.21	-0.2
4,599,437	+		GFF4605	0.21	-0.5
4,599,437	+		GFF4605	0.21	-0.1
4,599,450	+		GFF4605	0.21	+0.8
4,599,453	-		GFF4605	0.22	-3.3
4,599,515	-		GFF4605	0.25	-0.9
4,599,573	-		GFF4605	0.28	-0.8
4,599,626	-		GFF4605	0.31	-0.5
4,599,626	-		GFF4605	0.31	+0.1
4,599,642	+		GFF4605	0.32	-0.2
4,599,642	+		GFF4605	0.32	-0.0
4,599,650	-		GFF4605	0.33	+1.1
4,599,650	-		GFF4605	0.33	-0.3
4,599,659	+		GFF4605	0.33	+0.8
4,599,874	-		GFF4605	0.45	+0.3
4,599,898	+		GFF4605	0.46	+0.1
4,599,898	+		GFF4605	0.46	+0.8
4,599,909	+		GFF4605	0.47	+0.6