Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4560 and GFF4561 are separated by 3 nucleotides GFF4561 and GFF4562 are separated by 6 nucleotides GFF4562 and GFF4563 are separated by 2 nucleotides GFF4563 and GFF4564 are separated by 181 nucleotides
GFF4560 - ATP synthase gamma chain (EC 3.6.3.14), at 4,552,979 to 4,553,863
GFF4560
GFF4561 - Transporter, LysE family, at 4,553,867 to 4,554,493
GFF4561
GFF4562 - ATP synthase alpha chain (EC 3.6.3.14), at 4,554,500 to 4,556,029
GFF4562
GFF4563 - ATP synthase delta chain (EC 3.6.3.14), at 4,556,032 to 4,556,586
GFF4563
GFF4564 - Putative protease, at 4,556,768 to 4,558,327
GFF4564
Position (kb) 4554
4555
4556
4557 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4553.881 kb on - strand at 4553.937 kb on - strand, within GFF4561 at 4553.937 kb on - strand, within GFF4561 at 4553.954 kb on - strand, within GFF4561 at 4553.959 kb on - strand, within GFF4561 at 4553.964 kb on - strand, within GFF4561 at 4553.964 kb on - strand, within GFF4561 at 4553.987 kb on - strand, within GFF4561 at 4554.020 kb on - strand, within GFF4561 at 4554.022 kb on - strand, within GFF4561 at 4554.130 kb on - strand, within GFF4561 at 4554.130 kb on - strand, within GFF4561 at 4554.130 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.140 kb on - strand, within GFF4561 at 4554.142 kb on - strand, within GFF4561 at 4554.145 kb on - strand, within GFF4561 at 4554.145 kb on - strand, within GFF4561 at 4554.151 kb on - strand, within GFF4561 at 4554.204 kb on - strand, within GFF4561 at 4554.226 kb on - strand, within GFF4561 at 4554.231 kb on - strand, within GFF4561 at 4554.232 kb on - strand, within GFF4561 at 4554.242 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.278 kb on - strand, within GFF4561 at 4554.289 kb on - strand, within GFF4561 at 4554.299 kb on - strand, within GFF4561 at 4554.318 kb on - strand, within GFF4561 at 4554.326 kb on - strand, within GFF4561 at 4554.331 kb on - strand, within GFF4561 at 4554.333 kb on - strand, within GFF4561 at 4554.338 kb on - strand, within GFF4561 at 4554.338 kb on - strand, within GFF4561 at 4554.387 kb on - strand, within GFF4561 at 4554.420 kb on - strand, within GFF4561 at 4554.442 kb on - strand at 4554.447 kb on - strand at 4554.447 kb on - strand at 4554.483 kb on - strand at 4554.484 kb on - strand at 4554.493 kb on - strand at 4554.493 kb on - strand at 4556.047 kb on - strand at 4556.047 kb on - strand at 4556.067 kb on - strand at 4556.067 kb on - strand at 4556.067 kb on - strand at 4556.689 kb on + strand at 4556.766 kb on + strand at 4556.766 kb on + strand at 4556.772 kb on + strand at 4556.773 kb on - strand at 4556.773 kb on - strand at 4556.773 kb on - strand at 4556.773 kb on - strand at 4556.774 kb on - strand at 4556.774 kb on - strand at 4556.797 kb on - strand at 4556.819 kb on - strand at 4556.819 kb on - strand at 4556.819 kb on - strand at 4556.838 kb on + strand at 4556.846 kb on - strand at 4556.856 kb on - strand at 4556.857 kb on + strand at 4556.857 kb on + strand at 4556.857 kb on + strand at 4556.865 kb on - strand at 4556.865 kb on - strand at 4556.865 kb on - strand at 4556.877 kb on + strand at 4556.883 kb on - strand at 4556.890 kb on - strand at 4556.909 kb on + strand at 4556.918 kb on - strand at 4556.919 kb on + strand at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.925 kb on + strand, within GFF4564 at 4556.927 kb on + strand, within GFF4564 at 4556.927 kb on + strand, within GFF4564 at 4556.927 kb on + strand, within GFF4564 at 4556.927 kb on + strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.933 kb on - strand, within GFF4564 at 4556.937 kb on + strand, within GFF4564 at 4556.937 kb on + strand, within GFF4564 at 4556.937 kb on + strand, within GFF4564 at 4556.945 kb on - strand, within GFF4564 at 4556.945 kb on - strand, within GFF4564 at 4556.945 kb on - strand, within GFF4564 at 4556.947 kb on + strand, within GFF4564 at 4556.975 kb on + strand, within GFF4564 at 4556.983 kb on - strand, within GFF4564 at 4556.990 kb on - strand, within GFF4564 at 4556.990 kb on - strand, within GFF4564
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,553,881 - -0.4 4,553,937 - GFF4561 0.11 -2.9 4,553,937 - GFF4561 0.11 +0.3 4,553,954 - GFF4561 0.14 -0.1 4,553,959 - GFF4561 0.15 -0.5 4,553,964 - GFF4561 0.15 -0.7 4,553,964 - GFF4561 0.15 -0.8 4,553,987 - GFF4561 0.19 +0.0 4,554,020 - GFF4561 0.24 +0.2 4,554,022 - GFF4561 0.25 +1.3 4,554,130 - GFF4561 0.42 +0.8 4,554,130 - GFF4561 0.42 +1.5 4,554,130 - GFF4561 0.42 +0.4 4,554,140 - GFF4561 0.44 +0.6 4,554,140 - GFF4561 0.44 -0.4 4,554,140 - GFF4561 0.44 -1.5 4,554,140 - GFF4561 0.44 -0.6 4,554,140 - GFF4561 0.44 +0.0 4,554,140 - GFF4561 0.44 -0.1 4,554,140 - GFF4561 0.44 +0.2 4,554,140 - GFF4561 0.44 +1.5 4,554,140 - GFF4561 0.44 -0.3 4,554,140 - GFF4561 0.44 -0.9 4,554,140 - GFF4561 0.44 -0.5 4,554,140 - GFF4561 0.44 -1.0 4,554,140 - GFF4561 0.44 +0.6 4,554,140 - GFF4561 0.44 -1.7 4,554,140 - GFF4561 0.44 -1.3 4,554,140 - GFF4561 0.44 -2.3 4,554,140 - GFF4561 0.44 +0.2 4,554,140 - GFF4561 0.44 -0.9 4,554,140 - GFF4561 0.44 -0.5 4,554,140 - GFF4561 0.44 -0.6 4,554,140 - GFF4561 0.44 -0.0 4,554,142 - GFF4561 0.44 -0.2 4,554,145 - GFF4561 0.44 -1.0 4,554,145 - GFF4561 0.44 +0.1 4,554,151 - GFF4561 0.45 +0.2 4,554,204 - GFF4561 0.54 -1.7 4,554,226 - GFF4561 0.57 -0.0 4,554,231 - GFF4561 0.58 -0.6 4,554,232 - GFF4561 0.58 +0.6 4,554,242 - GFF4561 0.60 -0.6 4,554,278 - GFF4561 0.66 -2.3 4,554,278 - GFF4561 0.66 +0.1 4,554,278 - GFF4561 0.66 -1.2 4,554,278 - GFF4561 0.66 -0.3 4,554,278 - GFF4561 0.66 +0.5 4,554,278 - GFF4561 0.66 -2.3 4,554,278 - GFF4561 0.66 -0.4 4,554,278 - GFF4561 0.66 -1.2 4,554,289 - GFF4561 0.67 +0.8 4,554,299 - GFF4561 0.69 +1.0 4,554,318 - GFF4561 0.72 -0.5 4,554,326 - GFF4561 0.73 +0.3 4,554,331 - GFF4561 0.74 -0.2 4,554,333 - GFF4561 0.74 -2.7 4,554,338 - GFF4561 0.75 +0.8 4,554,338 - GFF4561 0.75 +0.2 4,554,387 - GFF4561 0.83 -1.9 4,554,420 - GFF4561 0.88 -0.6 4,554,442 - -0.4 4,554,447 - -0.1 4,554,447 - -2.8 4,554,483 - -0.7 4,554,484 - +1.1 4,554,493 - -0.4 4,554,493 - +0.7 4,556,047 - -2.4 4,556,047 - +0.6 4,556,067 - -1.0 4,556,067 - -1.2 4,556,067 - +0.3 4,556,689 + +0.1 4,556,766 + -0.5 4,556,766 + +0.9 4,556,772 + -2.2 4,556,773 - +0.8 4,556,773 - +1.2 4,556,773 - -2.2 4,556,773 - -0.3 4,556,774 - +0.2 4,556,774 - -0.2 4,556,797 - -0.0 4,556,819 - -0.6 4,556,819 - -1.1 4,556,819 - +0.4 4,556,838 + -0.3 4,556,846 - +0.5 4,556,856 - +1.2 4,556,857 + -1.6 4,556,857 + -1.2 4,556,857 + +0.7 4,556,865 - -0.0 4,556,865 - -0.1 4,556,865 - -1.3 4,556,877 + +0.2 4,556,883 - +1.1 4,556,890 - -1.1 4,556,909 + -0.8 4,556,918 - -1.0 4,556,919 + -1.2 4,556,925 + GFF4564 0.10 -0.9 4,556,925 + GFF4564 0.10 -0.8 4,556,925 + GFF4564 0.10 -1.0 4,556,925 + GFF4564 0.10 +1.0 4,556,925 + GFF4564 0.10 -0.9 4,556,925 + GFF4564 0.10 +0.5 4,556,925 + GFF4564 0.10 -0.7 4,556,925 + GFF4564 0.10 -0.3 4,556,927 + GFF4564 0.10 +0.0 4,556,927 + GFF4564 0.10 -1.4 4,556,927 + GFF4564 0.10 -0.8 4,556,927 + GFF4564 0.10 -1.6 4,556,933 - GFF4564 0.11 +0.2 4,556,933 - GFF4564 0.11 +1.0 4,556,933 - GFF4564 0.11 -0.6 4,556,933 - GFF4564 0.11 -0.3 4,556,933 - GFF4564 0.11 +0.0 4,556,933 - GFF4564 0.11 -0.0 4,556,933 - GFF4564 0.11 -0.6 4,556,933 - GFF4564 0.11 -1.6 4,556,933 - GFF4564 0.11 +0.2 4,556,937 + GFF4564 0.11 +1.3 4,556,937 + GFF4564 0.11 -1.0 4,556,937 + GFF4564 0.11 +1.1 4,556,945 - GFF4564 0.11 -1.9 4,556,945 - GFF4564 0.11 -1.5 4,556,945 - GFF4564 0.11 +0.4 4,556,947 + GFF4564 0.11 -1.9 4,556,975 + GFF4564 0.13 -1.0 4,556,983 - GFF4564 0.14 -0.2 4,556,990 - GFF4564 0.14 +0.9 4,556,990 - GFF4564 0.14 -0.6
Or see this region's nucleotide sequence