Strain Fitness in Sphingobium sp. HT1-2 around GFF4543

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,534,765	-				-0.8
4,534,765	-				-0.0
4,534,765	-				+1.3
4,534,788	-				+1.0
4,534,826	+				-0.4
4,534,860	+				-0.2
4,534,881	+				-0.1
4,534,881	+				-1.4
4,534,884	-				-0.3
4,534,889	-				-0.8
4,534,889	-				-0.4
4,534,889	-				-2.3
4,534,926	-				-0.3
4,534,926	-				-0.2
4,534,926	-				-0.9
4,534,935	-				-0.3
4,534,980	+				+1.1
4,534,988	+				+0.5
4,534,996	-				-0.1
4,535,025	+				-0.5
4,535,025	+				-0.9
4,535,025	+				-2.1
4,535,025	+				-0.1
4,535,025	+				-0.8
4,535,025	+				+0.7
4,535,025	+				-1.0
4,535,030	+				+1.3
4,535,030	+				-1.6
4,535,030	+				+0.4
4,535,030	+				-0.3
4,535,030	+				+0.1
4,535,030	+				-0.3
4,535,030	+				-0.9
4,535,032	+				+1.4
4,535,032	+				+0.1
4,535,032	+				-3.2
4,535,032	+				-0.3
4,535,033	-				-1.0
4,535,033	-				-0.4
4,535,033	-				-0.3
4,535,033	-				-0.4
4,535,033	-				-0.1
4,535,037	+				-0.3
4,535,038	-				-0.1
4,535,038	-				-0.1
4,535,038	-				+0.5
4,535,038	-				-1.6
4,535,045	-				+0.3
4,535,045	-				-0.5
4,535,058	-				-1.1
4,535,076	+				-0.0
4,535,076	-				-1.4
4,535,076	-				+0.6
4,535,111	+		GFF4543	0.11	-0.1
4,535,113	-		GFF4543	0.11	-0.2
4,535,151	+		GFF4543	0.12	-0.2
4,535,151	+		GFF4543	0.12	-0.6
4,535,151	+		GFF4543	0.12	-1.8
4,535,151	+		GFF4543	0.12	-0.0
4,535,159	-		GFF4543	0.13	-0.1
4,535,159	-		GFF4543	0.13	-0.2
4,535,159	-		GFF4543	0.13	-0.1
4,535,159	-		GFF4543	0.13	-0.3
4,535,159	-		GFF4543	0.13	+0.1
4,535,174	-		GFF4543	0.13	-1.9
4,535,176	+		GFF4543	0.13	-1.3
4,535,199	+		GFF4543	0.14	+0.1
4,535,199	+		GFF4543	0.14	-0.2
4,535,207	-		GFF4543	0.14	-0.3
4,535,207	-		GFF4543	0.14	-0.1
4,535,222	+		GFF4543	0.15	-0.4
4,535,224	+		GFF4543	0.15	+0.4
4,535,230	-		GFF4543	0.15	-0.8
4,535,230	-		GFF4543	0.15	+0.1
4,535,244	-		GFF4543	0.16	-0.8
4,535,282	+		GFF4543	0.18	+0.9
4,535,290	-		GFF4543	0.18	+1.5
4,535,290	-		GFF4543	0.18	+1.0
4,535,364	+		GFF4543	0.21	+0.0
4,535,422	+		GFF4543	0.23	+0.1
4,535,427	+		GFF4543	0.23	-0.8
4,535,427	+		GFF4543	0.23	-1.1
4,535,451	+		GFF4543	0.24	-3.0
4,535,451	+		GFF4543	0.24	+0.8
4,535,459	-		GFF4543	0.25	-0.4
4,535,459	-		GFF4543	0.25	-0.9
4,535,461	+		GFF4543	0.25	-0.3
4,535,469	-		GFF4543	0.25	+1.6
4,535,469	-		GFF4543	0.25	-0.4
4,535,484	-		GFF4543	0.26	-1.8
4,535,497	+		GFF4543	0.26	-0.3
4,535,517	-		GFF4543	0.27	+0.3
4,535,525	-		GFF4543	0.27	-2.3
4,535,526	+		GFF4543	0.27	-1.0
4,535,526	-		GFF4543	0.27	-0.6
4,535,533	-		GFF4543	0.28	-2.2
4,535,609	+		GFF4543	0.31	-0.8
4,535,627	+		GFF4543	0.32	-0.6
4,535,632	+		GFF4543	0.32	-1.0
4,535,669	+		GFF4543	0.33	-0.0
4,535,687	+		GFF4543	0.34	+1.2
4,535,695	-		GFF4543	0.34	-0.5
4,535,705	-		GFF4543	0.35	+0.4
4,535,729	+		GFF4543	0.36	+0.7
4,535,743	-		GFF4543	0.36	-0.8
4,535,743	-		GFF4543	0.36	-1.3
4,535,748	+		GFF4543	0.36	+0.2
4,535,748	+		GFF4543	0.36	-0.3
4,535,748	+		GFF4543	0.36	-0.6
4,535,758	+		GFF4543	0.37	+1.1
4,535,768	-		GFF4543	0.37	+1.2
4,535,770	+		GFF4543	0.37	+0.3
4,535,770	+		GFF4543	0.37	-0.6
4,535,770	+		GFF4543	0.37	-0.7
4,535,770	+		GFF4543	0.37	-0.2
4,535,770	+		GFF4543	0.37	-1.7
4,535,770	+		GFF4543	0.37	-0.5
4,535,778	-		GFF4543	0.38	-0.6
4,535,778	-		GFF4543	0.38	-1.8
4,535,786	+		GFF4543	0.38	-2.2
4,535,786	+		GFF4543	0.38	+0.1
4,535,786	+		GFF4543	0.38	-0.5
4,535,786	+		GFF4543	0.38	-0.9
4,535,786	+		GFF4543	0.38	-0.8
4,535,791	+		GFF4543	0.38	-0.3
4,535,791	+		GFF4543	0.38	+0.0
4,535,794	+		GFF4543	0.38	-1.0
4,535,796	+		GFF4543	0.38	+0.1
4,535,799	+		GFF4543	0.39	-2.0
4,535,799	+		GFF4543	0.39	+1.6
4,535,799	+		GFF4543	0.39	-0.7
4,535,799	+		GFF4543	0.39	-0.5
4,535,802	-		GFF4543	0.39	-0.8
4,535,812	+		GFF4543	0.39	-0.1
4,535,821	+		GFF4543	0.39	-0.3
4,535,821	+		GFF4543	0.39	+1.0
4,535,821	+		GFF4543	0.39	+0.9
4,535,829	-		GFF4543	0.40	+0.2
4,535,831	+		GFF4543	0.40	+2.3
4,535,854	+		GFF4543	0.41	-2.3
4,535,854	+		GFF4543	0.41	-0.1
4,535,862	-		GFF4543	0.41	-1.8
4,535,862	-		GFF4543	0.41	-1.8
4,535,872	-		GFF4543	0.42	-3.4
4,535,874	-		GFF4543	0.42	-0.7
4,535,879	-		GFF4543	0.42	+0.6
4,535,889	-		GFF4543	0.42	-0.2
4,535,910	+		GFF4543	0.43	+0.7
4,535,915	+		GFF4543	0.43	+0.5
4,535,916	-		GFF4543	0.43	-1.3
4,535,925	+		GFF4543	0.44	-1.2
4,535,935	+		GFF4543	0.44	-0.5
4,535,943	+		GFF4543	0.44	-0.2
4,535,944	+		GFF4543	0.44	-1.4
4,535,944	+		GFF4543	0.44	-1.0
4,535,951	-		GFF4543	0.45	-1.0
4,535,959	-		GFF4543	0.45	+0.1
4,535,961	-		GFF4543	0.45	-0.1
4,535,961	-		GFF4543	0.45	-0.1
4,535,983	+		GFF4543	0.46	-0.5
4,535,983	-		GFF4543	0.46	-0.1
4,535,989	+		GFF4543	0.46	+0.8
4,535,989	+		GFF4543	0.46	+0.2
4,535,989	+		GFF4543	0.46	+1.0
4,535,989	+		GFF4543	0.46	-0.5
4,535,989	+		GFF4543	0.46	+0.5
4,535,989	+		GFF4543	0.46	-0.9
4,535,989	+		GFF4543	0.46	-1.1
4,535,989	+		GFF4543	0.46	-1.4
4,535,997	-		GFF4543	0.47	-0.5
4,535,997	-		GFF4543	0.47	-0.2
4,535,997	-		GFF4543	0.47	-0.1
4,536,048	-		GFF4543	0.49	-1.0
4,536,049	+		GFF4543	0.49	-2.3
4,536,054	+		GFF4543	0.49	+1.0
4,536,071	+		GFF4543	0.50	-1.0
4,536,076	+		GFF4543	0.50	+0.8
4,536,079	-		GFF4543	0.50	+0.4
4,536,081	+		GFF4543	0.50	-0.9
4,536,081	+		GFF4543	0.50	+0.8
4,536,081	+		GFF4543	0.50	-0.9
4,536,081	+		GFF4543	0.50	-0.4
4,536,089	-		GFF4543	0.50	-0.0
4,536,089	-		GFF4543	0.50	-0.0
4,536,100	-		GFF4543	0.51	-2.8
4,536,105	-		GFF4543	0.51	-0.1
4,536,107	+		GFF4543	0.51	-0.5
4,536,107	+		GFF4543	0.51	+0.5
4,536,115	-		GFF4543	0.51	-0.4
4,536,115	-		GFF4543	0.51	-1.2
4,536,115	-		GFF4543	0.51	-0.0
4,536,115	-		GFF4543	0.51	-2.5
4,536,122	-		GFF4543	0.52	-1.0
4,536,142	-		GFF4543	0.52	-0.1
4,536,142	-		GFF4543	0.52	+0.2
4,536,176	-		GFF4543	0.54	+0.0
4,536,215	+		GFF4543	0.55	+0.5
4,536,233	+		GFF4543	0.56	-0.4
4,536,342	+		GFF4543	0.61	-1.8
4,536,366	-		GFF4543	0.62	+0.2
4,536,376	+		GFF4543	0.62	-0.3
4,536,388	+		GFF4543	0.62	+0.1
4,536,402	-		GFF4543	0.63	+0.7
4,536,408	+		GFF4543	0.63	-0.7
4,536,408	+		GFF4543	0.63	+0.2
4,536,408	+		GFF4543	0.63	+1.1
4,536,416	-		GFF4543	0.64	+0.2
4,536,428	+		GFF4543	0.64	-0.8
4,536,428	+		GFF4543	0.64	+0.0
4,536,431	+		GFF4543	0.64	-0.7
4,536,431	+		GFF4543	0.64	-0.8
4,536,431	+		GFF4543	0.64	-0.7
4,536,433	+		GFF4543	0.64	+0.9
4,536,433	+		GFF4543	0.64	-0.4
4,536,433	+		GFF4543	0.64	-1.6
4,536,433	+		GFF4543	0.64	-0.2
4,536,433	+		GFF4543	0.64	-0.5
4,536,433	+		GFF4543	0.64	+0.6
4,536,433	+		GFF4543	0.64	+0.4
4,536,433	+		GFF4543	0.64	+0.4
4,536,433	+		GFF4543	0.64	+0.7
4,536,433	+		GFF4543	0.64	-2.2
4,536,433	+		GFF4543	0.64	+0.2
4,536,433	+		GFF4543	0.64	-0.4
4,536,433	+		GFF4543	0.64	+0.1
4,536,433	+		GFF4543	0.64	-0.3
4,536,433	+		GFF4543	0.64	-0.2
4,536,433	+		GFF4543	0.64	+0.6
4,536,433	+		GFF4543	0.64	+0.7
4,536,433	+		GFF4543	0.64	-2.0
4,536,433	+		GFF4543	0.64	-1.0
4,536,438	+		GFF4543	0.65	-1.4
4,536,438	+		GFF4543	0.65	-1.7
4,536,438	+		GFF4543	0.65	-0.7
4,536,438	+		GFF4543	0.65	-0.6
4,536,438	+		GFF4543	0.65	-0.7
4,536,438	+		GFF4543	0.65	-2.2
4,536,438	+		GFF4543	0.65	-1.2
4,536,438	+		GFF4543	0.65	-0.8
4,536,438	+		GFF4543	0.65	+0.2
4,536,438	+		GFF4543	0.65	+0.5
4,536,438	+		GFF4543	0.65	+0.0
4,536,439	-		GFF4543	0.65	-1.3
4,536,441	-		GFF4543	0.65	-1.2
4,536,441	-		GFF4543	0.65	-0.7
4,536,441	-		GFF4543	0.65	+1.0
4,536,441	-		GFF4543	0.65	-1.6
4,536,441	-		GFF4543	0.65	+1.4
4,536,441	-		GFF4543	0.65	-0.5
4,536,441	-		GFF4543	0.65	-0.3
4,536,441	-		GFF4543	0.65	-0.0
4,536,441	-		GFF4543	0.65	-1.8
4,536,441	-		GFF4543	0.65	+0.9
4,536,441	-		GFF4543	0.65	-0.1
4,536,441	-		GFF4543	0.65	+1.4
4,536,441	-		GFF4543	0.65	-0.3
4,536,441	-		GFF4543	0.65	+1.5
4,536,441	-		GFF4543	0.65	-1.0
4,536,441	-		GFF4543	0.65	-0.5
4,536,441	-		GFF4543	0.65	-0.8
4,536,441	-		GFF4543	0.65	-0.9
4,536,441	-		GFF4543	0.65	-0.3
4,536,441	-		GFF4543	0.65	+0.1
4,536,441	-		GFF4543	0.65	+0.5
4,536,441	-		GFF4543	0.65	-0.7
4,536,441	-		GFF4543	0.65	-0.7
4,536,441	-		GFF4543	0.65	+1.1
4,536,441	-		GFF4543	0.65	-0.8
4,536,441	-		GFF4543	0.65	-1.6
4,536,441	-		GFF4543	0.65	-0.0
4,536,441	-		GFF4543	0.65	-0.1
4,536,441	-		GFF4543	0.65	-0.2
4,536,443	+		GFF4543	0.65	+0.3
4,536,446	-		GFF4543	0.65	+0.6
4,536,446	-		GFF4543	0.65	-0.6
4,536,446	-		GFF4543	0.65	-0.9
4,536,446	-		GFF4543	0.65	-0.3
4,536,446	-		GFF4543	0.65	-2.8
4,536,446	-		GFF4543	0.65	+0.1
4,536,446	-		GFF4543	0.65	-0.8
4,536,446	-		GFF4543	0.65	+1.1
4,536,446	-		GFF4543	0.65	-1.6
4,536,446	-		GFF4543	0.65	+0.0
4,536,453	-		GFF4543	0.65	-0.0
4,536,463	-		GFF4543	0.66	-1.4
4,536,463	-		GFF4543	0.66	-0.8
4,536,521	+		GFF4543	0.68	-1.2
4,536,561	+		GFF4543	0.70	-1.9
4,536,562	-		GFF4543	0.70	-0.5
4,536,577	+		GFF4543	0.70	+0.5
4,536,602	+		GFF4543	0.71	+0.3
4,536,607	+		GFF4543	0.71	-1.5
4,536,625	+		GFF4543	0.72	+0.4
4,536,630	+		GFF4543	0.72	-1.1
4,536,635	+		GFF4543	0.73	-0.3
4,536,656	-		GFF4543	0.73	+0.3
4,536,669	+		GFF4543	0.74	-0.3
4,536,698	-		GFF4543	0.75	+0.2
4,536,722	+		GFF4543	0.76	-0.3
4,536,764	+		GFF4543	0.78	-0.6
4,536,776	+		GFF4543	0.78	+1.0
4,536,783	+		GFF4543	0.79	+0.6
4,536,783	+		GFF4543	0.79	+1.2
4,536,810	-		GFF4543	0.80	-0.8
4,536,810	-		GFF4543	0.80	-1.3
4,536,810	-		GFF4543	0.80	-0.1
4,536,831	+		GFF4543	0.80	+0.4
4,536,851	+		GFF4543	0.81	-0.1
4,536,852	+		GFF4543	0.81	-0.8
4,536,859	+		GFF4543	0.82	+2.0
4,536,886	-		GFF4543	0.83	-0.6
4,536,921	+		GFF4543	0.84	+1.2
4,536,929	-		GFF4543	0.84	+1.0
4,536,929	-		GFF4543	0.84	-0.6
4,536,929	-		GFF4543	0.84	+1.1
4,536,929	-		GFF4543	0.84	-0.6
4,536,929	-		GFF4543	0.84	-0.0
4,536,929	-		GFF4543	0.84	+0.6
4,536,929	-		GFF4543	0.84	-0.9
4,536,929	-		GFF4543	0.84	-0.3
4,536,956	+		GFF4543	0.86	+1.1
4,536,956	+		GFF4543	0.86	-0.8
4,536,956	+		GFF4543	0.86	+1.0
4,536,964	-		GFF4543	0.86	+0.2
4,536,964	-		GFF4543	0.86	+0.3
4,536,964	-		GFF4543	0.86	-0.5
4,536,972	+		GFF4543	0.86	-1.3
4,536,975	-		GFF4543	0.86	-0.2
4,536,977	+		GFF4543	0.86	+0.6
4,536,992	-		GFF4543	0.87	-1.8
4,536,997	-		GFF4543	0.87	-3.1
4,536,997	-		GFF4543	0.87	-0.0
4,537,002	+		GFF4543	0.87	-1.0
4,537,005	-		GFF4543	0.88	-1.0
4,537,025	+		GFF4543	0.88	-0.1
4,537,033	+		GFF4543	0.89	-0.7
4,537,033	+		GFF4543	0.89	+0.4
4,537,033	+		GFF4543	0.89	-1.0
4,537,033	+		GFF4543	0.89	+1.5
4,537,033	+		GFF4543	0.89	-0.8
4,537,033	-		GFF4543	0.89	-0.4
4,537,041	-		GFF4543	0.89	+0.9
4,537,041	-		GFF4543	0.89	+1.2
4,537,041	-		GFF4543	0.89	-2.3
4,537,041	-		GFF4543	0.89	-1.6
4,537,041	-		GFF4543	0.89	-0.0
4,537,051	+		GFF4543	0.89	-0.5
4,537,059	-		GFF4543	0.90	-0.1
4,537,067	-				-0.0
4,537,094	+				-0.6
4,537,094	+				+1.1
4,537,094	+				-0.1
4,537,102	-				-0.7
4,537,102	-				+0.2
4,537,216	-				-1.1
4,537,232	-				+0.2
4,537,248	+				-0.8
4,537,264	-				-0.6
4,537,365	+				-2.9
4,537,370	+				+0.3
4,537,370	+				+0.2
4,537,373	-				-0.4
4,537,375	+				-0.6
4,537,378	-				+2.7
4,537,383	-				+0.6
4,537,418	-				-0.6
4,537,444	+				-1.0
4,537,444	+				+0.7
4,537,444	+				-0.4
4,537,444	+				-1.6
4,537,444	+				+0.3
4,537,452	-				-0.6
4,537,452	-				-0.5
4,537,465	-				-3.3
4,537,467	+				+0.4
4,537,467	+				+0.1
4,537,475	-				+0.5
4,537,529	+		GFF4544	0.27	+0.0
4,537,566	+		GFF4544	0.47	+1.0
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4,537,577	+		GFF4544	0.52	-2.6
4,537,577	+		GFF4544	0.52	-0.3
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4,537,650	+				-0.8
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4,538,105	-		GFF4545	0.49	+0.1
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4,538,161	+		GFF4545	0.57	-0.7
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4,538,258	-		GFF4545	0.72	-0.5
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