Strain Fitness in Sphingobium sp. HT1-2 around GFF4533

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,524,055	+				-0.1
4,524,055	+				-0.8
4,524,063	-				-1.0
4,524,073	-				-1.7
4,524,076	+				-0.3
4,524,079	+				-0.4
4,524,079	+				-1.6
4,524,082	-				+0.3
4,524,084	+				-0.9
4,524,087	-				-3.2
4,524,087	-				-1.2
4,524,087	-				-0.3
4,524,087	-				+0.1
4,524,088	+				+0.2
4,524,088	+				-1.2
4,524,096	-				-0.5
4,524,096	-				-0.8
4,524,101	-				+0.0
4,524,118	+				-2.1
4,524,118	+				-0.6
4,524,118	+				-0.6
4,524,118	+				+0.6
4,524,118	+				+0.9
4,524,126	-				+0.1
4,524,126	-				-0.4
4,524,126	-				-0.5
4,524,126	-				-0.3
4,524,126	-				+1.0
4,524,126	-				+0.3
4,524,126	-				-0.5
4,524,126	-				-0.8
4,524,126	-				-0.0
4,524,132	-				-1.4
4,524,139	+				-0.1
4,524,140	+				-0.7
4,524,141	+				+0.4
4,524,141	+				+0.3
4,524,141	+				-1.3
4,524,147	-				+0.3
4,524,147	-				+0.8
4,524,148	-				-0.5
4,524,149	-				-0.3
4,524,149	-				-1.7
4,524,149	-				-0.9
4,524,156	+				-0.2
4,524,157	-				-0.1
4,524,164	+				-0.3
4,524,164	+				-0.9
4,524,164	+				-0.6
4,524,164	-				+0.7
4,524,177	-				-1.1
4,524,178	+				+1.6
4,524,179	+				-0.9
4,524,187	-				-0.3
4,524,224	-				-0.6
4,524,231	-				-1.3
4,524,241	+				+0.3
4,524,278	+		GFF4533	0.10	+1.4
4,524,286	-		GFF4533	0.11	-0.7
4,524,322	+		GFF4533	0.13	-0.9
4,524,335	-		GFF4533	0.14	-0.2
4,524,348	-		GFF4533	0.15	-1.8
4,524,389	-		GFF4533	0.18	-0.1
4,524,398	+		GFF4533	0.18	+0.4
4,524,404	-		GFF4533	0.19	-0.7
4,524,406	-		GFF4533	0.19	+0.4
4,524,448	+		GFF4533	0.22	-0.0
4,524,456	-		GFF4533	0.22	-2.9
4,524,461	-		GFF4533	0.23	+0.3
4,524,487	-		GFF4533	0.25	-0.3
4,524,496	-		GFF4533	0.25	-0.4
4,524,496	-		GFF4533	0.25	-0.5
4,524,498	+		GFF4533	0.25	-1.3
4,524,501	-		GFF4533	0.26	-1.2
4,524,506	-		GFF4533	0.26	+0.5
4,524,515	-		GFF4533	0.27	+0.3
4,524,518	+		GFF4533	0.27	+1.1
4,524,526	+		GFF4533	0.27	-2.2
4,524,526	+		GFF4533	0.27	+0.8
4,524,526	-		GFF4533	0.27	-0.5
4,524,538	+		GFF4533	0.28	-1.3
4,524,541	-		GFF4533	0.28	+0.4
4,524,588	+		GFF4533	0.32	-0.4
4,524,602	+		GFF4533	0.33	-0.7
4,524,612	+		GFF4533	0.33	+0.3
4,524,637	+		GFF4533	0.35	-1.0
4,524,637	+		GFF4533	0.35	-1.1
4,524,642	+		GFF4533	0.35	-1.9
4,524,647	+		GFF4533	0.36	+0.1
4,524,647	+		GFF4533	0.36	-3.3
4,524,673	-		GFF4533	0.37	-0.3
4,524,679	-		GFF4533	0.38	+0.5
4,524,686	-		GFF4533	0.38	-1.6
4,524,695	+		GFF4533	0.39	-1.1
4,524,703	-		GFF4533	0.39	-0.7
4,524,703	-		GFF4533	0.39	-0.1
4,524,774	+		GFF4533	0.44	+0.8
4,524,787	+		GFF4533	0.45	-1.4
4,524,788	+		GFF4533	0.45	-0.1
4,524,795	-		GFF4533	0.46	-1.0
4,524,796	-		GFF4533	0.46	+0.7
4,524,804	+		GFF4533	0.46	-0.5
4,524,813	-		GFF4533	0.47	-0.7
4,524,813	-		GFF4533	0.47	+0.6
4,524,827	+		GFF4533	0.48	-0.2
4,524,827	-		GFF4533	0.48	+1.1
4,524,840	-		GFF4533	0.49	-0.5
4,524,898	+		GFF4533	0.53	+0.5
4,524,913	+		GFF4533	0.54	-0.6
4,524,929	+		GFF4533	0.55	-0.8
4,524,938	+		GFF4533	0.56	-0.1
4,524,938	+		GFF4533	0.56	-0.0
4,524,948	+		GFF4533	0.56	+0.4
4,524,991	+		GFF4533	0.59	-0.2
4,524,999	+		GFF4533	0.60	+0.1
4,524,999	+		GFF4533	0.60	-1.0
4,525,002	-		GFF4533	0.60	-0.1
4,525,002	-		GFF4533	0.60	-3.2
4,525,002	-		GFF4533	0.60	+0.1
4,525,007	-		GFF4533	0.60	-0.5
4,525,007	-		GFF4533	0.60	-0.2
4,525,007	-		GFF4533	0.60	+0.5
4,525,007	-		GFF4533	0.60	+0.3
4,525,007	-		GFF4533	0.60	+0.6
4,525,009	+		GFF4533	0.61	-0.2
4,525,020	-		GFF4533	0.61	-0.7
4,525,044	+		GFF4533	0.63	-2.2
4,525,045	-		GFF4533	0.63	+1.1
4,525,086	-		GFF4533	0.66	-1.7
4,525,087	+		GFF4533	0.66	+0.4
4,525,087	+		GFF4533	0.66	-0.6
4,525,095	-		GFF4533	0.66	+0.4
4,525,096	+		GFF4533	0.67	-0.7
4,525,114	+		GFF4533	0.68	-0.9
4,525,122	-		GFF4533	0.68	-0.2
4,525,126	+		GFF4533	0.69	-0.4
4,525,134	-		GFF4533	0.69	-2.6
4,525,150	-		GFF4533	0.70	-1.9
4,525,150	-		GFF4533	0.70	-0.3
4,525,177	+		GFF4533	0.72	-0.4
4,525,191	+		GFF4533	0.73	-1.2
4,525,199	+		GFF4533	0.74	+0.5
4,525,199	+		GFF4533	0.74	+0.2
4,525,240	-		GFF4533	0.76	-0.9
4,525,256	+		GFF4533	0.78	-0.2
4,525,264	+		GFF4533	0.78	+0.7
4,525,272	-		GFF4533	0.79	-1.0
4,525,272	-		GFF4533	0.79	-0.9
4,525,287	+		GFF4533	0.80	+0.3
4,525,289	-		GFF4533	0.80	-1.7
4,525,290	-		GFF4533	0.80	-1.5
4,525,295	-		GFF4533	0.80	+0.6
4,525,295	-		GFF4533	0.80	+0.1
4,525,296	+		GFF4533	0.80	-1.6
4,525,299	-		GFF4533	0.81	+0.0
4,525,338	+		GFF4533	0.83	-0.6
4,525,339	+		GFF4533	0.83	-0.7
4,525,348	-		GFF4533	0.84	-0.2
4,525,349	+		GFF4533	0.84	-0.0
4,525,390	-		GFF4533	0.87	-0.2
4,525,419	+		GFF4533	0.89	-0.6
4,525,430	+		GFF4533	0.90	+0.4
4,525,430	+		GFF4533	0.90	-1.6
4,525,435	+		GFF4533	0.90	+0.2
4,525,438	-				-1.4
4,525,448	-				+0.5
4,525,461	+				-0.6
4,525,461	+				-1.2
4,525,464	-				-0.4
4,525,469	-				-1.3
4,525,469	-				-1.3
4,525,469	-				-0.9
4,525,469	-				+1.3
4,525,482	+				-0.1
4,525,493	+				-2.2
4,525,524	-				+1.5
4,525,531	+				-0.8
4,525,531	+				-0.5
4,525,534	+				-0.2
4,525,539	-				-0.6
4,525,542	-				-1.3
4,525,542	-				+0.0
4,525,544	+				+0.5
4,525,577	+				+0.1
4,525,582	+				-0.5
4,525,584	-				+0.1
4,525,607	+				-0.1
4,525,619	+				-0.4
4,525,632	+				-0.5
4,525,635	-				-1.0
4,525,671	-				+1.3
4,525,671	-				+0.5
4,525,673	+				-1.1
4,525,681	-				+0.6
4,525,688	-				+0.3
4,525,688	-				-0.3
4,525,697	-				+0.5
4,525,707	-				-1.0
4,525,730	-				-0.5
4,525,740	-				-0.6
4,525,745	-				+0.1
4,525,754	-				+0.5
4,525,754	-				-0.7
4,525,764	+		GFF4534	0.10	-1.7
4,525,777	+		GFF4534	0.11	-0.3
4,525,777	+		GFF4534	0.11	+0.2
4,525,777	+		GFF4534	0.11	-0.9
4,525,782	+		GFF4534	0.11	-0.6
4,525,787	+		GFF4534	0.12	+0.1
4,525,790	-		GFF4534	0.12	-1.6
4,525,795	-		GFF4534	0.12	-0.5
4,525,795	-		GFF4534	0.12	-0.3
4,525,795	-		GFF4534	0.12	-0.7
4,525,812	+		GFF4534	0.13	+0.7
4,525,819	+		GFF4534	0.13	-0.9
4,525,819	+		GFF4534	0.13	-1.7
4,525,827	-		GFF4534	0.14	-0.5
4,525,842	-		GFF4534	0.15	-0.5
4,525,845	+		GFF4534	0.15	-0.7
4,525,853	-		GFF4534	0.16	-2.2
4,525,853	-		GFF4534	0.16	+0.7
4,525,853	-		GFF4534	0.16	-1.8
4,525,859	-		GFF4534	0.16	-1.3
4,525,861	+		GFF4534	0.16	-2.2
4,525,869	-		GFF4534	0.16	-0.8
4,525,877	+		GFF4534	0.17	-1.6
4,525,885	+		GFF4534	0.17	-1.9
4,525,885	+		GFF4534	0.17	-2.4
4,525,885	+		GFF4534	0.17	-0.5
4,525,885	+		GFF4534	0.17	-0.4
4,525,895	+		GFF4534	0.18	-1.2
4,525,906	+		GFF4534	0.19	+0.0
4,525,906	+		GFF4534	0.19	+0.6
4,525,906	+		GFF4534	0.19	-0.8
4,525,920	-		GFF4534	0.20	-1.3
4,525,948	-		GFF4534	0.21	-0.8
4,525,948	-		GFF4534	0.21	-0.0
4,525,987	+		GFF4534	0.24	-0.6
4,526,003	-		GFF4534	0.25	-1.3
4,526,025	+		GFF4534	0.26	-1.4
4,526,028	-		GFF4534	0.26	-1.9
4,526,066	-		GFF4534	0.28	-1.0
4,526,088	+		GFF4534	0.30	-0.1
4,526,098	-		GFF4534	0.30	-0.0
4,526,101	-		GFF4534	0.30	-0.4
4,526,103	+		GFF4534	0.31	+0.3
4,526,103	+		GFF4534	0.31	+1.0
4,526,111	-		GFF4534	0.31	-0.4
4,526,111	-		GFF4534	0.31	+0.2
4,526,111	-		GFF4534	0.31	-0.4
4,526,111	-		GFF4534	0.31	-0.6
4,526,111	-		GFF4534	0.31	-1.1
4,526,111	-		GFF4534	0.31	+0.3
4,526,118	+		GFF4534	0.32	+0.6
4,526,121	-		GFF4534	0.32	+0.3
4,526,126	-		GFF4534	0.32	-0.5
4,526,155	+		GFF4534	0.34	-0.6
4,526,158	+		GFF4534	0.34	+1.2
4,526,163	+		GFF4534	0.34	-1.9
4,526,163	-		GFF4534	0.34	+0.3
4,526,164	-		GFF4534	0.34	-2.4
4,526,166	-		GFF4534	0.34	-0.5
4,526,193	+		GFF4534	0.36	-0.6
4,526,204	+		GFF4534	0.37	+0.0
4,526,206	+		GFF4534	0.37	+0.5
4,526,214	-		GFF4534	0.37	-0.6
4,526,223	-		GFF4534	0.38	+0.4
4,526,260	-		GFF4534	0.40	-0.9
4,526,262	-		GFF4534	0.40	-0.2
4,526,264	+		GFF4534	0.40	-1.0
4,526,269	-		GFF4534	0.41	-0.3
4,526,284	+		GFF4534	0.42	-0.6
4,526,284	+		GFF4534	0.42	+0.9
4,526,291	-		GFF4534	0.42	-2.4
4,526,292	-		GFF4534	0.42	-2.5
4,526,292	-		GFF4534	0.42	+1.1
4,526,292	-		GFF4534	0.42	+0.5
4,526,299	+		GFF4534	0.42	-2.0
4,526,307	-		GFF4534	0.43	-0.9
4,526,340	-		GFF4534	0.45	-1.8
4,526,347	+		GFF4534	0.45	+0.0
4,526,355	-		GFF4534	0.46	-0.5
4,526,359	-		GFF4534	0.46	-0.2
4,526,360	-		GFF4534	0.46	-0.7
4,526,364	+		GFF4534	0.46	-0.7
4,526,367	-		GFF4534	0.47	-1.7
4,526,391	+		GFF4534	0.48	-0.2
4,526,393	+		GFF4534	0.48	-0.6
4,526,394	+		GFF4534	0.48	+0.2
4,526,394	+		GFF4534	0.48	-0.3
4,526,398	-		GFF4534	0.48	-1.0
4,526,404	+		GFF4534	0.49	-2.6
4,526,404	+		GFF4534	0.49	-1.5
4,526,412	-		GFF4534	0.49	+0.0
4,526,483	-		GFF4534	0.54	-0.3
4,526,493	-		GFF4534	0.54	+0.3
4,526,501	+		GFF4534	0.55	-2.0
4,526,510	+		GFF4534	0.55	-1.1
4,526,518	+		GFF4534	0.56	-0.5
4,526,518	-		GFF4534	0.56	+0.1
4,526,520	+		GFF4534	0.56	+0.5
4,526,520	+		GFF4534	0.56	-0.7
4,526,523	+		GFF4534	0.56	+0.6
4,526,526	-		GFF4534	0.56	-0.6
4,526,526	-		GFF4534	0.56	-1.6
4,526,526	-		GFF4534	0.56	-0.6
4,526,528	-		GFF4534	0.56	-1.6
4,526,538	-		GFF4534	0.57	-0.2
4,526,538	-		GFF4534	0.57	-0.5
4,526,538	-		GFF4534	0.57	-1.2
4,526,557	+		GFF4534	0.58	+0.0
4,526,565	-		GFF4534	0.59	-0.8
4,526,575	-		GFF4534	0.59	+0.8