Strain Fitness in Sphingobium sp. HT1-2 around GFF4499

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,491,147	+		GFF4498	0.69	+1.2
4,491,147	+		GFF4498	0.69	+0.9
4,491,147	+		GFF4498	0.69	-0.7
4,491,147	+		GFF4498	0.69	+0.0
4,491,148	-		GFF4498	0.69	-1.9
4,491,155	+		GFF4498	0.69	+0.4
4,491,155	-		GFF4498	0.69	+1.0
4,491,155	-		GFF4498	0.69	-2.4
4,491,163	-		GFF4498	0.70	-1.8
4,491,163	-		GFF4498	0.70	+0.3
4,491,167	+		GFF4498	0.70	-0.2
4,491,167	+		GFF4498	0.70	+0.1
4,491,167	+		GFF4498	0.70	+1.3
4,491,167	+		GFF4498	0.70	+0.3
4,491,168	-		GFF4498	0.70	+0.1
4,491,175	-		GFF4498	0.70	-0.6
4,491,175	-		GFF4498	0.70	-1.0
4,491,193	+		GFF4498	0.71	+0.4
4,491,198	+		GFF4498	0.71	+2.1
4,491,239	-		GFF4498	0.72	+1.0
4,491,260	-		GFF4498	0.73	+0.3
4,491,261	-		GFF4498	0.73	-0.5
4,491,263	+		GFF4498	0.73	-0.2
4,491,268	+		GFF4498	0.73	+0.7
4,491,275	+		GFF4498	0.73	+0.1
4,491,276	-		GFF4498	0.73	+0.1
4,491,278	+		GFF4498	0.73	+0.4
4,491,283	-		GFF4498	0.74	-0.7
4,491,286	-		GFF4498	0.74	-2.2
4,491,298	+		GFF4498	0.74	+2.4
4,491,314	-		GFF4498	0.75	-1.3
4,491,320	-		GFF4498	0.75	+1.2
4,491,320	-		GFF4498	0.75	+0.3
4,491,322	+		GFF4498	0.75	+0.1
4,491,329	+		GFF4498	0.75	+0.8
4,491,376	-		GFF4498	0.77	+1.7
4,491,399	+		GFF4498	0.78	-0.1
4,491,417	+		GFF4498	0.78	-0.7
4,491,418	-		GFF4498	0.78	+0.5
4,491,423	-		GFF4498	0.78	-1.4
4,491,423	-		GFF4498	0.78	-0.6
4,491,425	-		GFF4498	0.78	+1.0
4,491,425	-		GFF4498	0.78	-0.3
4,491,425	-		GFF4498	0.78	+0.7
4,491,425	-		GFF4498	0.78	+0.3
4,491,425	-		GFF4498	0.78	+1.3
4,491,425	-		GFF4498	0.78	-0.2
4,491,425	-		GFF4498	0.78	+0.3
4,491,430	-		GFF4498	0.79	-1.0
4,491,430	-		GFF4498	0.79	+0.7
4,491,432	+		GFF4498	0.79	-2.4
4,491,443	+		GFF4498	0.79	+0.6
4,491,454	+		GFF4498	0.79	-0.2
4,491,454	+		GFF4498	0.79	+0.6
4,491,454	+		GFF4498	0.79	+0.5
4,491,462	-		GFF4498	0.80	+0.4
4,491,466	-		GFF4498	0.80	+0.1
4,491,481	+		GFF4498	0.80	-0.4
4,491,490	+		GFF4498	0.81	+1.2
4,491,494	+		GFF4498	0.81	+1.0
4,491,544	+		GFF4498	0.82	+1.7
4,491,583	+		GFF4498	0.84	-0.7
4,491,593	+		GFF4498	0.84	+0.2
4,491,607	-		GFF4498	0.85	+0.0
4,491,616	-		GFF4498	0.85	+1.0
4,491,669	-		GFF4498	0.87	-1.4
4,491,686	+		GFF4498	0.87	+0.7
4,491,686	+		GFF4498	0.87	-0.6
4,491,694	-		GFF4498	0.88	+1.8
4,491,707	+		GFF4498	0.88	-1.9
4,491,710	-		GFF4498	0.88	+0.4
4,491,712	+		GFF4498	0.88	+0.1
4,491,712	+		GFF4498	0.88	+0.9
4,491,720	-		GFF4498	0.88	+0.1
4,491,746	-		GFF4498	0.89	-0.2
4,491,809	+				+0.7
4,491,809	+				+1.4
4,491,809	+				+0.4
4,491,809	+				-2.5
4,491,809	+				-0.9
4,491,809	+				+0.8
4,491,809	+				-1.0
4,491,817	-				-0.9
4,491,817	-				+1.3
4,491,819	+				-0.4
4,491,827	-				-1.5
4,491,840	+				-0.7
4,491,853	+				+1.5
4,491,856	-				-0.4
4,491,860	+				+1.0
4,491,861	-				-0.9
4,491,861	-				-1.1
4,491,865	+				-0.8
4,491,868	-				+0.5
4,491,873	-				+1.5
4,491,873	-				-0.2
4,491,873	-				+0.5
4,491,876	+				-1.7
4,491,876	+				-0.5
4,491,876	+				-0.4
4,491,876	+				+1.8
4,491,884	-				-0.2
4,491,889	-				-1.2
4,491,898	+				+0.8
4,491,901	-				+0.5
4,491,906	+				-0.1
4,491,906	+				+1.3
4,491,906	+				+0.1
4,491,906	-				+1.6
4,491,906	-				+0.8
4,491,906	-				-1.2
4,491,913	+				+0.4
4,491,913	+				+1.3
4,491,914	-				+0.1
4,491,914	-				+0.3
4,491,914	-				-0.3
4,491,914	-				+1.2
4,491,916	-				+0.2
4,491,921	-				+0.1
4,491,922	+				+1.5
4,491,926	+				+0.5
4,491,932	-				-2.3
4,491,932	-				-0.2
4,491,940	-				-0.4
4,491,944	-				+1.6
4,491,944	-				+0.8
4,491,951	-				+0.1
4,491,954	-				+0.8
4,491,959	-				-2.3
4,491,965	-				-1.5
4,491,965	-				+0.6
4,491,966	-				+1.1
4,491,972	+				-0.7
4,491,997	-				+0.3
4,492,014	-				-0.4
4,492,040	-				+0.4
4,492,050	-				+0.8
4,492,211	+		GFF4499	0.10	-0.7
4,492,216	+		GFF4499	0.11	-0.6
4,492,237	-		GFF4499	0.14	-1.6
4,492,247	+		GFF4499	0.16	-1.9
4,492,247	+		GFF4499	0.16	+0.8
4,492,247	+		GFF4499	0.16	-1.2
4,492,247	+		GFF4499	0.16	+0.0
4,492,247	+		GFF4499	0.16	-0.5
4,492,247	+		GFF4499	0.16	-0.2
4,492,250	-		GFF4499	0.16	+0.1
4,492,250	-		GFF4499	0.16	-1.0
4,492,252	+		GFF4499	0.16	-0.9
4,492,255	-		GFF4499	0.17	-0.1
4,492,255	-		GFF4499	0.17	-0.4
4,492,255	-		GFF4499	0.17	+0.5
4,492,255	-		GFF4499	0.17	+0.4
4,492,255	-		GFF4499	0.17	+2.1
4,492,255	-		GFF4499	0.17	-0.6
4,492,255	-		GFF4499	0.17	+1.5
4,492,255	-		GFF4499	0.17	+0.7
4,492,260	-		GFF4499	0.18	+0.3
4,492,262	+		GFF4499	0.18	+1.5
4,492,262	+		GFF4499	0.18	-0.5
4,492,270	-		GFF4499	0.19	-1.6
4,492,270	-		GFF4499	0.19	+1.7
4,492,270	-		GFF4499	0.19	+0.1
4,492,276	+		GFF4499	0.20	-0.4
4,492,300	-		GFF4499	0.24	-0.4
4,492,321	+		GFF4499	0.27	-1.0
4,492,333	+		GFF4499	0.29	-0.2
4,492,334	+		GFF4499	0.29	+2.2
4,492,378	+		GFF4499	0.36	-1.6
4,492,380	+		GFF4499	0.36	-1.2
4,492,411	-		GFF4499	0.41	-1.3
4,492,414	+		GFF4499	0.42	-0.8
4,492,414	+		GFF4499	0.42	+0.6
4,492,416	-		GFF4499	0.42	+0.8
4,492,416	-		GFF4499	0.42	+0.4
4,492,420	+		GFF4499	0.42	-1.0
4,492,422	-		GFF4499	0.43	+1.7
4,492,428	-		GFF4499	0.44	+0.7
4,492,430	+		GFF4499	0.44	-1.7
4,492,445	+		GFF4499	0.46	-0.0
4,492,464	+		GFF4499	0.49	+0.8
4,492,486	-		GFF4499	0.53	+0.4
4,492,486	-		GFF4499	0.53	+0.5
4,492,493	+		GFF4499	0.54	+0.1
4,492,509	+		GFF4499	0.56	-2.4
4,492,517	-		GFF4499	0.58	-0.0
4,492,529	+		GFF4499	0.59	-0.4
4,492,530	+		GFF4499	0.60	-0.7
4,492,530	+		GFF4499	0.60	-0.2
4,492,545	-		GFF4499	0.62	-1.0
4,492,570	+		GFF4499	0.66	+0.5
4,492,579	+		GFF4499	0.67	-0.1
4,492,582	-		GFF4499	0.68	-0.7
4,492,585	+		GFF4499	0.68	+1.3
4,492,585	+		GFF4499	0.68	+0.1
4,492,590	+		GFF4499	0.69	+0.8
4,492,593	-		GFF4499	0.69	+0.7
4,492,595	+		GFF4499	0.70	-0.2
4,492,598	-		GFF4499	0.70	+1.3
4,492,598	-		GFF4499	0.70	-0.5
4,492,598	-		GFF4499	0.70	+0.8
4,492,598	-		GFF4499	0.70	-0.5
4,492,598	-		GFF4499	0.70	+0.1
4,492,598	-		GFF4499	0.70	+1.6
4,492,603	-		GFF4499	0.71	-0.7
4,492,603	-		GFF4499	0.71	+0.2
4,492,603	-		GFF4499	0.71	+0.1
4,492,612	+		GFF4499	0.72	+2.0
4,492,620	-		GFF4499	0.73	-1.8
4,492,620	-		GFF4499	0.73	-1.9
4,492,620	-		GFF4499	0.73	+2.1
4,492,620	-		GFF4499	0.73	-1.2
4,492,620	-		GFF4499	0.73	+1.0
4,492,639	+		GFF4499	0.76	-0.0
4,492,659	-		GFF4499	0.80	+1.3
4,492,667	-		GFF4499	0.81	+1.1
4,492,709	+		GFF4499	0.87	+1.4
4,492,709	+		GFF4499	0.87	+0.4
4,492,709	+		GFF4499	0.87	+1.6
4,492,710	-		GFF4499	0.87	+0.1
4,492,716	-		GFF4499	0.88	+1.4
4,492,717	-		GFF4499	0.89	-1.6
4,492,726	+				+1.5
4,492,729	+				+1.2
4,492,744	-				+0.2
4,492,756	+				+0.4
4,492,756	+				-1.0
4,492,756	+				-1.4
4,492,756	+				-0.4
4,492,764	-				+0.2
4,492,764	-				+0.7
4,492,807	-				+0.9
4,492,838	-				+0.4
4,492,855	+				-0.6
4,492,855	+				+0.4
4,492,859	-				+0.5
4,492,861	+				-0.7
4,492,879	-				+2.0
4,492,880	+				+0.1
4,492,888	-				-0.0
4,492,888	-				-1.5
4,492,888	-				-1.5
4,492,943	+				+0.8
4,492,943	+				+1.0
4,492,977	+				-0.8
4,492,977	+				+0.1
4,492,977	+				+0.9
4,492,977	+				-0.3
4,493,011	+				-0.7
4,493,016	+				+0.8
4,493,024	+				-1.4
4,493,024	+				+1.5
4,493,024	+				+1.5
4,493,026	-				+0.1
4,493,032	-		GFF4500	0.10	-0.6
4,493,032	-		GFF4500	0.10	+0.6
4,493,032	-		GFF4500	0.10	-0.7
4,493,051	+		GFF4500	0.11	+1.3
4,493,059	-		GFF4500	0.11	+0.9
4,493,066	+		GFF4500	0.12	+2.8
4,493,067	+		GFF4500	0.12	-0.7
4,493,070	-		GFF4500	0.12	+0.7
4,493,079	+		GFF4500	0.12	+0.0
4,493,085	+		GFF4500	0.13	-1.0
4,493,122	+		GFF4500	0.14	+0.1
4,493,122	+		GFF4500	0.14	+0.1
4,493,122	+		GFF4500	0.14	+0.1
4,493,122	+		GFF4500	0.14	-0.1
4,493,122	+		GFF4500	0.14	-1.6
4,493,122	+		GFF4500	0.14	+0.4
4,493,122	+		GFF4500	0.14	+0.1
4,493,122	+		GFF4500	0.14	+0.5
4,493,122	+		GFF4500	0.14	-0.1
4,493,130	-		GFF4500	0.15	+0.5
4,493,130	-		GFF4500	0.15	+0.1
4,493,130	-		GFF4500	0.15	-0.2
4,493,130	-		GFF4500	0.15	-1.1
4,493,130	-		GFF4500	0.15	+0.7
4,493,144	+		GFF4500	0.16	+0.6
4,493,152	-		GFF4500	0.16	+0.2
4,493,164	-		GFF4500	0.17	-0.9
4,493,187	+		GFF4500	0.18	+1.2
4,493,249	+		GFF4500	0.21	+1.1
4,493,249	-		GFF4500	0.21	-0.1
4,493,255	+		GFF4500	0.21	-0.2
4,493,265	+		GFF4500	0.22	-0.4
4,493,276	+		GFF4500	0.22	-0.5
4,493,281	+		GFF4500	0.22	-0.2
4,493,284	-		GFF4500	0.22	-0.5
4,493,284	-		GFF4500	0.22	-0.9
4,493,284	-		GFF4500	0.22	+0.1
4,493,319	-		GFF4500	0.24	-0.9
4,493,329	-		GFF4500	0.25	-0.3
4,493,364	+		GFF4500	0.26	+1.4
4,493,364	+		GFF4500	0.26	+0.4
4,493,364	+		GFF4500	0.26	-0.5
4,493,364	+		GFF4500	0.26	-0.3
4,493,372	-		GFF4500	0.27	+0.0
4,493,375	+		GFF4500	0.27	+1.5
4,493,390	+		GFF4500	0.28	-0.6
4,493,390	+		GFF4500	0.28	+0.2
4,493,390	+		GFF4500	0.28	-0.2
4,493,390	+		GFF4500	0.28	-0.5
4,493,390	+		GFF4500	0.28	-1.6
4,493,390	+		GFF4500	0.28	+0.9
4,493,398	-		GFF4500	0.28	+1.3
4,493,398	-		GFF4500	0.28	-0.6
4,493,398	-		GFF4500	0.28	-2.1
4,493,398	-		GFF4500	0.28	-0.0
4,493,398	-		GFF4500	0.28	+0.8
4,493,398	-		GFF4500	0.28	-0.5
4,493,398	-		GFF4500	0.28	-0.6
4,493,398	-		GFF4500	0.28	-1.7
4,493,416	+		GFF4500	0.29	-3.1
4,493,440	+		GFF4500	0.30	+0.2
4,493,440	+		GFF4500	0.30	+0.5
4,493,445	+		GFF4500	0.30	+1.0
4,493,448	-		GFF4500	0.31	-0.3
4,493,448	-		GFF4500	0.31	+0.2
4,493,450	-		GFF4500	0.31	-0.7
4,493,451	+		GFF4500	0.31	+0.2
4,493,453	-		GFF4500	0.31	+0.0
4,493,576	+		GFF4500	0.37	-1.7
4,493,619	+		GFF4500	0.39	-2.2
4,493,621	+		GFF4500	0.39	-0.3
4,493,623	+		GFF4500	0.39	+0.7
4,493,667	+		GFF4500	0.41	+0.1
4,493,686	-		GFF4500	0.42	-0.9
4,493,691	+		GFF4500	0.43	+0.3
4,493,699	-		GFF4500	0.43	-0.4
4,493,725	+		GFF4500	0.44	-0.5