Strain Fitness in Sphingobium sp. HT1-2 around GFF4400

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,402,246	+		GFF4399	0.30	-1.2
4,402,272	+		GFF4399	0.32	-0.2
4,402,272	+		GFF4399	0.32	-0.5
4,402,280	-		GFF4399	0.33	-0.3
4,402,289	+		GFF4399	0.33	-1.6
4,402,297	-		GFF4399	0.34	-0.4
4,402,299	+		GFF4399	0.34	-0.1
4,402,299	+		GFF4399	0.34	-0.5
4,402,299	+		GFF4399	0.34	+1.3
4,402,299	+		GFF4399	0.34	-1.1
4,402,307	-		GFF4399	0.35	-1.0
4,402,313	-		GFF4399	0.35	+0.2
4,402,321	+		GFF4399	0.36	-0.8
4,402,321	+		GFF4399	0.36	+1.0
4,402,384	+		GFF4399	0.40	+0.1
4,402,384	+		GFF4399	0.40	+0.5
4,402,386	+		GFF4399	0.41	+0.0
4,402,394	-		GFF4399	0.41	-0.9
4,402,394	-		GFF4399	0.41	-0.6
4,402,394	-		GFF4399	0.41	+0.3
4,402,394	-		GFF4399	0.41	-1.4
4,402,401	+		GFF4399	0.42	-0.1
4,402,433	-		GFF4399	0.44	-0.1
4,402,433	-		GFF4399	0.44	+0.5
4,402,438	+		GFF4399	0.44	+0.3
4,402,438	-		GFF4399	0.44	-1.4
4,402,460	+		GFF4399	0.46	+1.2
4,402,460	+		GFF4399	0.46	+0.3
4,402,468	-		GFF4399	0.47	-1.3
4,402,468	-		GFF4399	0.47	-0.5
4,402,468	-		GFF4399	0.47	-1.1
4,402,468	-		GFF4399	0.47	+0.2
4,402,508	+		GFF4399	0.50	+1.6
4,402,508	+		GFF4399	0.50	+0.2
4,402,508	+		GFF4399	0.50	-0.3
4,402,508	+		GFF4399	0.50	-0.1
4,402,508	+		GFF4399	0.50	-2.0
4,402,508	+		GFF4399	0.50	+0.2
4,402,509	+		GFF4399	0.50	+0.7
4,402,516	-		GFF4399	0.50	-0.4
4,402,516	-		GFF4399	0.50	-0.2
4,402,516	-		GFF4399	0.50	-0.9
4,402,517	-		GFF4399	0.50	-0.5
4,402,521	-		GFF4399	0.51	-2.7
4,402,532	-		GFF4399	0.51	-0.1
4,402,574	-		GFF4399	0.55	+0.1
4,402,579	+		GFF4399	0.55	-0.8
4,402,587	-		GFF4399	0.56	-0.6
4,402,608	-		GFF4399	0.57	-0.2
4,402,621	+		GFF4399	0.58	+1.0
4,402,623	-		GFF4399	0.58	+1.3
4,402,629	-		GFF4399	0.59	-0.8
4,402,629	-		GFF4399	0.59	-0.0
4,402,648	+		GFF4399	0.60	-0.8
4,402,704	+		GFF4399	0.64	-0.4
4,402,724	-		GFF4399	0.66	-1.1
4,402,750	+		GFF4399	0.68	+0.8
4,402,750	+		GFF4399	0.68	+0.6
4,402,754	-		GFF4399	0.68	-0.1
4,402,758	-		GFF4399	0.68	-1.4
4,402,764	+		GFF4399	0.69	+0.6
4,402,764	+		GFF4399	0.69	+1.3
4,402,772	-		GFF4399	0.69	+0.3
4,402,774	+		GFF4399	0.70	-0.2
4,402,782	-		GFF4399	0.70	+0.3
4,402,782	-		GFF4399	0.70	+0.8
4,402,784	+		GFF4399	0.70	-0.6
4,402,789	+		GFF4399	0.71	+1.3
4,402,794	+		GFF4399	0.71	-0.0
4,402,797	-		GFF4399	0.71	-0.4
4,402,797	-		GFF4399	0.71	-0.0
4,402,843	+		GFF4399	0.75	+0.1
4,402,843	+		GFF4399	0.75	-0.5
4,402,857	-		GFF4399	0.76	+0.7
4,402,859	+		GFF4399	0.76	-1.3
4,402,898	+		GFF4399	0.79	+0.2
4,402,904	+		GFF4399	0.79	+0.9
4,402,906	-		GFF4399	0.79	-0.8
4,402,908	+		GFF4399	0.80	+1.2
4,402,918	+		GFF4399	0.80	+0.1
4,402,924	-		GFF4399	0.81	+0.6
4,402,933	+		GFF4399	0.81	-0.1
4,402,933	+		GFF4399	0.81	+0.0
4,402,933	+		GFF4399	0.81	-2.9
4,402,933	+		GFF4399	0.81	-1.6
4,402,938	+		GFF4399	0.82	-0.5
4,402,938	+		GFF4399	0.82	-0.2
4,402,941	-		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-1.1
4,402,943	+		GFF4399	0.82	-0.8
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-0.2
4,402,943	+		GFF4399	0.82	+0.9
4,402,943	+		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-0.2
4,402,943	+		GFF4399	0.82	+1.2
4,402,943	+		GFF4399	0.82	-0.5
4,402,943	+		GFF4399	0.82	-0.2
4,402,943	+		GFF4399	0.82	+0.3
4,402,943	+		GFF4399	0.82	-2.1
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-1.9
4,402,943	+		GFF4399	0.82	-1.1
4,402,943	+		GFF4399	0.82	-0.1
4,402,943	+		GFF4399	0.82	-1.3
4,402,943	+		GFF4399	0.82	-1.4
4,402,943	+		GFF4399	0.82	+1.6
4,402,943	+		GFF4399	0.82	-0.7
4,402,943	+		GFF4399	0.82	-2.0
4,402,946	-		GFF4399	0.82	-0.8
4,402,951	-		GFF4399	0.83	-0.9
4,402,951	-		GFF4399	0.83	+0.1
4,402,951	-		GFF4399	0.83	-1.1
4,402,951	-		GFF4399	0.83	-0.4
4,402,951	-		GFF4399	0.83	-0.2
4,402,951	-		GFF4399	0.83	-0.8
4,402,951	-		GFF4399	0.83	-1.4
4,402,951	-		GFF4399	0.83	+0.4
4,402,951	-		GFF4399	0.83	+0.2
4,402,951	-		GFF4399	0.83	+1.5
4,402,951	-		GFF4399	0.83	+1.1
4,402,951	-		GFF4399	0.83	-1.0
4,402,951	-		GFF4399	0.83	-0.7
4,402,951	-		GFF4399	0.83	-1.1
4,402,951	-		GFF4399	0.83	+0.1
4,402,951	-		GFF4399	0.83	-2.1
4,402,951	-		GFF4399	0.83	-0.8
4,402,951	-		GFF4399	0.83	+0.9
4,402,951	-		GFF4399	0.83	+0.2
4,402,951	-		GFF4399	0.83	+0.1
4,402,951	-		GFF4399	0.83	+0.4
4,402,951	-		GFF4399	0.83	-0.9
4,402,951	-		GFF4399	0.83	-0.6
4,402,953	-		GFF4399	0.83	-0.4
4,402,961	-		GFF4399	0.84	-0.4
4,402,961	-		GFF4399	0.84	+0.0
4,402,961	-		GFF4399	0.84	+0.3
4,402,971	+		GFF4399	0.84	-0.3
4,402,979	-		GFF4399	0.85	+0.8
4,402,987	+		GFF4399	0.86	+0.4
4,402,987	+		GFF4399	0.86	-0.2
4,402,995	-		GFF4399	0.86	-0.7
4,402,995	-		GFF4399	0.86	-1.3
4,402,995	-		GFF4399	0.86	-0.6
4,402,995	-		GFF4399	0.86	-2.1
4,403,027	-		GFF4399	0.89	-1.3
4,403,030	+		GFF4399	0.89	-0.4
4,403,031	-		GFF4399	0.89	-0.3
4,403,031	-		GFF4399	0.89	-1.0
4,403,033	-		GFF4399	0.89	-0.9
4,403,053	-				-0.2
4,403,053	-				+0.7
4,403,071	-				-0.1
4,403,153	+				+0.8
4,403,243	+		GFF4400	0.12	+0.2
4,403,285	+		GFF4400	0.22	-0.5
4,403,287	+		GFF4400	0.22	+0.1
4,403,307	-		GFF4400	0.27	-0.3
4,403,314	-		GFF4400	0.29	-0.2
4,403,319	-		GFF4400	0.30	-0.0
4,403,319	-		GFF4400	0.30	-1.9
4,403,373	-		GFF4400	0.43	-1.0
4,403,392	-		GFF4400	0.47	-0.7
4,403,392	-		GFF4400	0.47	-0.3
4,403,394	+		GFF4400	0.48	-0.1
4,403,398	-		GFF4400	0.49	+0.7
4,403,398	-		GFF4400	0.49	-1.8
4,403,400	+		GFF4400	0.49	+0.5
4,403,400	+		GFF4400	0.49	-0.2
4,403,400	+		GFF4400	0.49	+0.4
4,403,402	-		GFF4400	0.50	+0.1
4,403,435	+		GFF4400	0.57	+0.9
4,403,435	+		GFF4400	0.57	+0.2
4,403,435	+		GFF4400	0.57	+0.5
4,403,470	+		GFF4400	0.66	-1.1
4,403,478	-		GFF4400	0.68	-3.1
4,403,520	+		GFF4400	0.78	-0.6
4,403,520	+		GFF4400	0.78	+0.1
4,403,520	+		GFF4400	0.78	-0.4
4,403,525	+		GFF4400	0.79	+0.5
4,403,528	-		GFF4400	0.80	-1.3
4,403,528	-		GFF4400	0.80	-1.0
4,403,528	-		GFF4400	0.80	+1.2
4,403,528	-		GFF4400	0.80	+0.3
4,403,528	-		GFF4400	0.80	-2.0
4,403,528	-		GFF4400	0.80	-0.5
4,403,528	-		GFF4400	0.80	+0.3
4,403,528	-		GFF4400	0.80	+0.8
4,403,530	-		GFF4400	0.80	-0.0
4,403,533	-		GFF4400	0.81	+0.5
4,403,535	-		GFF4400	0.81	-0.1
4,403,551	+		GFF4400	0.85	-0.6
4,403,551	+		GFF4400	0.85	+1.2
4,403,566	+		GFF4400	0.89	-0.6
4,403,583	+				+0.2
4,403,591	-				-1.1
4,403,609	+				-1.5
4,403,609	+				-2.3
4,403,609	+				+0.6
4,403,609	+				-2.1
4,403,609	+				+0.1
4,403,609	+				-2.7
4,403,609	+				+1.7
4,403,609	+				-0.2
4,403,617	-				-0.9
4,403,617	-				-0.7
4,403,617	-				-0.3
4,403,617	-				-0.6
4,403,622	-				-0.5
4,403,655	+				-1.4
4,403,667	+				-0.7
4,403,667	+				+0.3
4,403,671	+				-0.3
4,403,675	-				-0.3
4,403,675	-				-2.2
4,403,675	-				-0.5
4,403,675	-				+0.4
4,403,675	-				+0.4
4,403,676	+				-0.4
4,403,684	-				-1.4
4,403,684	-				-0.6
4,403,726	+				+0.5
4,403,731	+				+0.3
4,403,734	-				+1.0
4,403,734	-				+1.2
4,403,734	-				+0.4
4,403,734	-				-0.2
4,403,734	-				-0.8
4,403,734	-				+0.6
4,403,736	-				+2.0
4,403,739	-				+0.9
4,403,739	-				-0.4
4,403,744	-				-0.5
4,403,770	+				+0.2
4,403,832	-		GFF4401	0.14	-1.0
4,403,918	+		GFF4401	0.42	+0.1
4,403,926	-		GFF4401	0.44	+1.5
4,403,933	-		GFF4401	0.47	+0.8
4,403,952	-		GFF4401	0.53	-0.5
4,403,983	+		GFF4401	0.63	-0.2
4,403,983	+		GFF4401	0.63	+0.4
4,404,040	+		GFF4401	0.82	-0.8
4,404,082	-				-0.0
4,404,097	+				-1.7
4,404,118	+				+0.4
4,404,124	+				-0.1
4,404,124	+				+0.8
4,404,125	+				+0.9
4,404,126	-				-0.9
4,404,141	-				-1.0
4,404,143	+				-0.0
4,404,154	+				+0.3
4,404,198	-		GFF4402	0.23	-1.4
4,404,203	-		GFF4402	0.24	+0.7
4,404,215	+		GFF4402	0.28	-0.1
4,404,215	+		GFF4402	0.28	-0.3
4,404,215	+		GFF4402	0.28	+0.9
4,404,215	+		GFF4402	0.28	+0.9
4,404,215	+		GFF4402	0.28	-1.3
4,404,220	+		GFF4402	0.30	-0.4
4,404,220	+		GFF4402	0.30	-1.1
4,404,220	+		GFF4402	0.30	+0.7
4,404,223	-		GFF4402	0.31	-0.5
4,404,228	+		GFF4402	0.32	-0.5
4,404,257	-		GFF4402	0.42	-0.1
4,404,257	-		GFF4402	0.42	-1.1
4,404,308	-		GFF4402	0.58	-0.8
4,404,321	+		GFF4402	0.62	+1.2
4,404,321	+		GFF4402	0.62	-0.3
4,404,326	+		GFF4402	0.64	-0.3
4,404,326	+		GFF4402	0.64	-0.7
4,404,326	+		GFF4402	0.64	-0.3
4,404,326	+		GFF4402	0.64	+1.9
4,404,338	+		GFF4402	0.68	+0.9
4,404,358	+		GFF4402	0.74	+0.6
4,404,358	+		GFF4402	0.74	+0.8
4,404,374	+		GFF4402	0.79	-1.9
4,404,382	-		GFF4402	0.82	+0.2
4,404,382	-		GFF4402	0.82	-2.7
4,404,386	+		GFF4402	0.83	-1.4
4,404,486	+				-1.7
4,404,486	+				-0.1
4,404,511	+				+0.4
4,404,525	+				-0.1
4,404,530	+				+0.1
4,404,537	+				+0.2
4,404,537	+				-0.9
4,404,542	+				-0.0
4,404,549	+				-0.9
4,404,578	-				-1.2
4,404,580	+				+0.3
4,404,583	-				-0.1
4,404,592	+				-0.1
4,404,592	+				-2.4
4,404,598	+				-0.9
4,404,604	-				-0.2
4,404,611	-				+0.5