Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4344 and GFF4345 are separated by 34 nucleotides GFF4345 and GFF4346 are separated by 107 nucleotides
GFF4344 - FIG01423360: glycoside hydrolase, at 4,345,472 to 4,346,770
GFF4344
GFF4345 - UspA, at 4,346,805 to 4,346,981
GFF4345
GFF4346 - Mobile element protein, at 4,347,089 to 4,347,607
GFF4346
Position (kb) 4346
4347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4345.829 kb on + strand, within GFF4344 at 4345.833 kb on + strand, within GFF4344 at 4345.834 kb on + strand, within GFF4344 at 4345.842 kb on - strand, within GFF4344 at 4345.876 kb on + strand, within GFF4344 at 4345.922 kb on + strand, within GFF4344 at 4345.960 kb on - strand, within GFF4344 at 4345.977 kb on + strand, within GFF4344 at 4345.977 kb on + strand, within GFF4344 at 4345.977 kb on + strand, within GFF4344 at 4345.977 kb on + strand, within GFF4344 at 4345.977 kb on + strand, within GFF4344 at 4345.980 kb on - strand, within GFF4344 at 4345.985 kb on - strand, within GFF4344 at 4345.985 kb on - strand, within GFF4344 at 4345.985 kb on - strand, within GFF4344 at 4345.985 kb on - strand, within GFF4344 at 4345.985 kb on - strand, within GFF4344 at 4346.007 kb on - strand, within GFF4344 at 4346.022 kb on - strand, within GFF4344 at 4346.022 kb on - strand, within GFF4344 at 4346.022 kb on - strand, within GFF4344 at 4346.026 kb on + strand, within GFF4344 at 4346.045 kb on - strand, within GFF4344 at 4346.047 kb on - strand, within GFF4344 at 4346.081 kb on - strand, within GFF4344 at 4346.088 kb on + strand, within GFF4344 at 4346.130 kb on + strand, within GFF4344 at 4346.130 kb on + strand, within GFF4344 at 4346.132 kb on + strand, within GFF4344 at 4346.138 kb on - strand, within GFF4344 at 4346.140 kb on + strand, within GFF4344 at 4346.140 kb on + strand, within GFF4344 at 4346.140 kb on + strand, within GFF4344 at 4346.140 kb on + strand, within GFF4344 at 4346.146 kb on + strand, within GFF4344 at 4346.148 kb on - strand, within GFF4344 at 4346.148 kb on - strand, within GFF4344 at 4346.154 kb on + strand, within GFF4344 at 4346.186 kb on - strand, within GFF4344 at 4346.186 kb on - strand, within GFF4344 at 4346.194 kb on + strand, within GFF4344 at 4346.202 kb on - strand, within GFF4344 at 4346.207 kb on - strand, within GFF4344 at 4346.210 kb on + strand, within GFF4344 at 4346.242 kb on - strand, within GFF4344 at 4346.256 kb on + strand, within GFF4344 at 4346.256 kb on + strand, within GFF4344 at 4346.256 kb on + strand, within GFF4344 at 4346.256 kb on + strand, within GFF4344 at 4346.264 kb on - strand, within GFF4344 at 4346.264 kb on - strand, within GFF4344 at 4346.264 kb on - strand, within GFF4344 at 4346.275 kb on + strand, within GFF4344 at 4346.275 kb on + strand, within GFF4344 at 4346.277 kb on + strand, within GFF4344 at 4346.277 kb on + strand, within GFF4344 at 4346.277 kb on + strand, within GFF4344 at 4346.277 kb on + strand, within GFF4344 at 4346.281 kb on + strand, within GFF4344 at 4346.281 kb on - strand, within GFF4344 at 4346.283 kb on - strand, within GFF4344 at 4346.283 kb on - strand, within GFF4344 at 4346.283 kb on - strand, within GFF4344 at 4346.285 kb on - strand, within GFF4344 at 4346.285 kb on - strand, within GFF4344 at 4346.285 kb on - strand, within GFF4344 at 4346.290 kb on - strand, within GFF4344 at 4346.327 kb on + strand, within GFF4344 at 4346.335 kb on - strand, within GFF4344 at 4346.337 kb on + strand, within GFF4344 at 4346.337 kb on + strand, within GFF4344 at 4346.345 kb on - strand, within GFF4344 at 4346.347 kb on + strand, within GFF4344 at 4346.355 kb on - strand, within GFF4344 at 4346.355 kb on - strand, within GFF4344 at 4346.361 kb on - strand, within GFF4344 at 4346.368 kb on + strand, within GFF4344 at 4346.370 kb on - strand, within GFF4344 at 4346.377 kb on + strand, within GFF4344 at 4346.385 kb on - strand, within GFF4344 at 4346.390 kb on - strand, within GFF4344 at 4346.393 kb on + strand, within GFF4344 at 4346.393 kb on + strand, within GFF4344 at 4346.393 kb on - strand, within GFF4344 at 4346.401 kb on - strand, within GFF4344 at 4346.401 kb on - strand, within GFF4344 at 4346.401 kb on - strand, within GFF4344 at 4346.439 kb on - strand, within GFF4344 at 4346.448 kb on + strand, within GFF4344 at 4346.455 kb on + strand, within GFF4344 at 4346.458 kb on + strand, within GFF4344 at 4346.472 kb on - strand, within GFF4344 at 4346.481 kb on + strand, within GFF4344 at 4346.491 kb on - strand, within GFF4344 at 4346.496 kb on + strand, within GFF4344 at 4346.496 kb on + strand, within GFF4344 at 4346.497 kb on + strand, within GFF4344 at 4346.506 kb on + strand, within GFF4344 at 4346.514 kb on + strand, within GFF4344 at 4346.514 kb on + strand, within GFF4344 at 4346.522 kb on - strand, within GFF4344 at 4346.522 kb on - strand, within GFF4344 at 4346.522 kb on - strand, within GFF4344 at 4346.532 kb on + strand, within GFF4344 at 4346.540 kb on - strand, within GFF4344 at 4346.544 kb on + strand, within GFF4344 at 4346.552 kb on - strand, within GFF4344 at 4346.587 kb on - strand, within GFF4344 at 4346.590 kb on + strand, within GFF4344 at 4346.593 kb on - strand, within GFF4344 at 4346.595 kb on + strand, within GFF4344 at 4346.605 kb on + strand, within GFF4344 at 4346.608 kb on - strand, within GFF4344 at 4346.608 kb on - strand, within GFF4344 at 4346.615 kb on - strand, within GFF4344 at 4346.634 kb on + strand, within GFF4344 at 4346.634 kb on + strand, within GFF4344 at 4346.634 kb on + strand, within GFF4344 at 4346.639 kb on + strand, within GFF4344 at 4346.642 kb on - strand at 4346.642 kb on - strand at 4346.647 kb on - strand at 4346.648 kb on - strand at 4346.650 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.651 kb on + strand at 4346.653 kb on + strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.659 kb on - strand at 4346.669 kb on + strand at 4346.674 kb on - strand at 4346.677 kb on - strand at 4346.682 kb on - strand at 4346.687 kb on - strand at 4346.687 kb on - strand at 4346.693 kb on - strand at 4346.695 kb on + strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.703 kb on - strand at 4346.713 kb on + strand at 4346.742 kb on - strand at 4346.755 kb on + strand at 4346.772 kb on + strand at 4346.772 kb on + strand at 4346.777 kb on + strand at 4346.780 kb on - strand at 4346.780 kb on - strand at 4346.780 kb on - strand at 4346.814 kb on + strand at 4346.814 kb on + strand at 4346.814 kb on + strand at 4346.814 kb on - strand at 4346.822 kb on - strand at 4346.822 kb on - strand at 4346.822 kb on - strand at 4346.827 kb on - strand, within GFF4345 at 4346.827 kb on - strand, within GFF4345 at 4346.838 kb on + strand, within GFF4345 at 4346.846 kb on - strand, within GFF4345 at 4346.848 kb on + strand, within GFF4345 at 4346.856 kb on - strand, within GFF4345 at 4346.891 kb on + strand, within GFF4345 at 4346.891 kb on + strand, within GFF4345 at 4346.894 kb on - strand, within GFF4345 at 4346.899 kb on - strand, within GFF4345 at 4346.899 kb on - strand, within GFF4345 at 4346.930 kb on + strand, within GFF4345 at 4346.935 kb on + strand, within GFF4345 at 4346.935 kb on + strand, within GFF4345 at 4346.957 kb on - strand, within GFF4345 at 4346.985 kb on + strand at 4346.990 kb on + strand at 4346.996 kb on + strand at 4347.006 kb on + strand at 4347.006 kb on + strand at 4347.011 kb on + strand at 4347.011 kb on + strand at 4347.014 kb on - strand at 4347.016 kb on - strand at 4347.025 kb on - strand at 4347.030 kb on - strand at 4347.601 kb on + strand at 4347.605 kb on + strand at 4347.605 kb on + strand at 4347.611 kb on + strand at 4347.611 kb on + strand at 4347.612 kb on + strand at 4347.619 kb on - strand at 4347.619 kb on - strand at 4347.619 kb on - strand at 4347.619 kb on - strand at 4347.620 kb on - strand at 4347.627 kb on - strand at 4347.629 kb on - strand at 4347.640 kb on + strand at 4347.641 kb on + strand at 4347.648 kb on - strand at 4347.649 kb on - strand at 4347.659 kb on + strand at 4347.676 kb on + strand at 4347.676 kb on - strand at 4347.683 kb on + strand at 4347.683 kb on + strand at 4347.683 kb on + strand at 4347.683 kb on + strand at 4347.683 kb on - strand at 4347.685 kb on + strand at 4347.685 kb on + strand at 4347.688 kb on - strand at 4347.691 kb on - strand at 4347.691 kb on - strand at 4347.691 kb on - strand at 4347.702 kb on + strand at 4347.702 kb on + strand at 4347.702 kb on + strand at 4347.702 kb on + strand at 4347.732 kb on - strand at 4347.732 kb on - strand at 4347.732 kb on - strand at 4347.734 kb on + strand at 4347.734 kb on + strand at 4347.737 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.742 kb on - strand at 4347.745 kb on + strand at 4347.778 kb on - strand at 4347.791 kb on + strand at 4347.846 kb on + strand at 4347.847 kb on + strand at 4347.847 kb on + strand at 4347.847 kb on + strand at 4347.850 kb on - strand at 4347.850 kb on - strand at 4347.855 kb on - strand at 4347.863 kb on + strand at 4347.867 kb on - strand at 4347.883 kb on - strand at 4347.885 kb on + strand at 4347.885 kb on + strand at 4347.885 kb on - strand at 4347.908 kb on + strand at 4347.916 kb on - strand at 4347.916 kb on - strand at 4347.939 kb on - strand at 4347.943 kb on + strand at 4347.943 kb on + strand at 4347.943 kb on + strand at 4347.951 kb on - strand at 4347.951 kb on - strand at 4347.951 kb on - strand at 4347.953 kb on + strand at 4347.953 kb on + strand at 4347.961 kb on - strand at 4347.961 kb on - strand at 4347.961 kb on - strand at 4347.969 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,345,829 + GFF4344 0.27 -0.5 4,345,833 + GFF4344 0.28 -0.0 4,345,834 + GFF4344 0.28 -0.3 4,345,842 - GFF4344 0.28 -0.1 4,345,876 + GFF4344 0.31 +0.7 4,345,922 + GFF4344 0.35 -0.8 4,345,960 - GFF4344 0.38 -1.0 4,345,977 + GFF4344 0.39 -0.0 4,345,977 + GFF4344 0.39 -1.9 4,345,977 + GFF4344 0.39 -1.8 4,345,977 + GFF4344 0.39 -0.4 4,345,977 + GFF4344 0.39 -0.7 4,345,980 - GFF4344 0.39 +0.8 4,345,985 - GFF4344 0.39 -0.5 4,345,985 - GFF4344 0.39 -1.8 4,345,985 - GFF4344 0.39 -1.3 4,345,985 - GFF4344 0.39 -0.5 4,345,985 - GFF4344 0.39 -1.9 4,346,007 - GFF4344 0.41 +0.1 4,346,022 - GFF4344 0.42 -0.3 4,346,022 - GFF4344 0.42 +0.6 4,346,022 - GFF4344 0.42 +0.4 4,346,026 + GFF4344 0.43 -2.3 4,346,045 - GFF4344 0.44 -1.1 4,346,047 - GFF4344 0.44 -0.5 4,346,081 - GFF4344 0.47 -0.0 4,346,088 + GFF4344 0.47 -0.4 4,346,130 + GFF4344 0.51 -0.5 4,346,130 + GFF4344 0.51 +1.1 4,346,132 + GFF4344 0.51 -2.0 4,346,138 - GFF4344 0.51 -0.7 4,346,140 + GFF4344 0.51 -0.2 4,346,140 + GFF4344 0.51 +0.1 4,346,140 + GFF4344 0.51 +0.3 4,346,140 + GFF4344 0.51 -0.5 4,346,146 + GFF4344 0.52 -2.6 4,346,148 - GFF4344 0.52 -0.3 4,346,148 - GFF4344 0.52 -1.4 4,346,154 + GFF4344 0.53 +0.1 4,346,186 - GFF4344 0.55 -0.2 4,346,186 - GFF4344 0.55 -1.3 4,346,194 + GFF4344 0.56 +0.6 4,346,202 - GFF4344 0.56 -0.5 4,346,207 - GFF4344 0.57 +0.7 4,346,210 + GFF4344 0.57 -0.3 4,346,242 - GFF4344 0.59 -1.1 4,346,256 + GFF4344 0.60 +0.9 4,346,256 + GFF4344 0.60 -0.3 4,346,256 + GFF4344 0.60 +1.3 4,346,256 + GFF4344 0.60 -0.6 4,346,264 - GFF4344 0.61 -2.0 4,346,264 - GFF4344 0.61 +1.1 4,346,264 - GFF4344 0.61 +0.3 4,346,275 + GFF4344 0.62 +0.1 4,346,275 + GFF4344 0.62 -1.0 4,346,277 + GFF4344 0.62 +0.2 4,346,277 + GFF4344 0.62 -0.9 4,346,277 + GFF4344 0.62 -0.8 4,346,277 + GFF4344 0.62 -0.5 4,346,281 + GFF4344 0.62 -0.3 4,346,281 - GFF4344 0.62 -1.0 4,346,283 - GFF4344 0.62 -0.8 4,346,283 - GFF4344 0.62 +1.0 4,346,283 - GFF4344 0.62 -0.2 4,346,285 - GFF4344 0.63 -2.5 4,346,285 - GFF4344 0.63 -0.7 4,346,285 - GFF4344 0.63 -1.3 4,346,290 - GFF4344 0.63 -0.5 4,346,327 + GFF4344 0.66 +1.2 4,346,335 - GFF4344 0.66 -0.4 4,346,337 + GFF4344 0.67 -0.0 4,346,337 + GFF4344 0.67 +0.4 4,346,345 - GFF4344 0.67 -0.6 4,346,347 + GFF4344 0.67 -1.7 4,346,355 - GFF4344 0.68 +0.3 4,346,355 - GFF4344 0.68 -0.6 4,346,361 - GFF4344 0.68 -1.3 4,346,368 + GFF4344 0.69 -0.1 4,346,370 - GFF4344 0.69 -0.9 4,346,377 + GFF4344 0.70 -0.4 4,346,385 - GFF4344 0.70 -2.4 4,346,390 - GFF4344 0.71 -1.2 4,346,393 + GFF4344 0.71 +0.8 4,346,393 + GFF4344 0.71 -0.3 4,346,393 - GFF4344 0.71 -1.2 4,346,401 - GFF4344 0.72 -0.1 4,346,401 - GFF4344 0.72 -1.0 4,346,401 - GFF4344 0.72 +0.3 4,346,439 - GFF4344 0.74 +0.7 4,346,448 + GFF4344 0.75 -0.7 4,346,455 + GFF4344 0.76 +0.5 4,346,458 + GFF4344 0.76 -1.0 4,346,472 - GFF4344 0.77 -1.9 4,346,481 + GFF4344 0.78 +0.6 4,346,491 - GFF4344 0.78 -2.5 4,346,496 + GFF4344 0.79 -1.9 4,346,496 + GFF4344 0.79 -0.4 4,346,497 + GFF4344 0.79 -1.4 4,346,506 + GFF4344 0.80 +0.2 4,346,514 + GFF4344 0.80 -1.8 4,346,514 + GFF4344 0.80 +0.8 4,346,522 - GFF4344 0.81 +0.7 4,346,522 - GFF4344 0.81 -0.5 4,346,522 - GFF4344 0.81 +0.2 4,346,532 + GFF4344 0.82 +0.5 4,346,540 - GFF4344 0.82 -1.2 4,346,544 + GFF4344 0.83 -0.7 4,346,552 - GFF4344 0.83 +0.2 4,346,587 - GFF4344 0.86 +0.8 4,346,590 + GFF4344 0.86 +0.9 4,346,593 - GFF4344 0.86 +0.9 4,346,595 + GFF4344 0.86 -0.4 4,346,605 + GFF4344 0.87 -0.3 4,346,608 - GFF4344 0.87 +0.1 4,346,608 - GFF4344 0.87 -0.9 4,346,615 - GFF4344 0.88 +0.1 4,346,634 + GFF4344 0.89 +1.0 4,346,634 + GFF4344 0.89 -0.6 4,346,634 + GFF4344 0.89 +0.4 4,346,639 + GFF4344 0.90 +0.3 4,346,642 - +0.3 4,346,642 - -1.4 4,346,647 - +0.2 4,346,648 - +0.1 4,346,650 + -0.3 4,346,651 + +0.6 4,346,651 + -0.8 4,346,651 + -1.4 4,346,651 + -1.1 4,346,651 + -0.8 4,346,651 + -0.2 4,346,651 + +0.2 4,346,651 + -2.7 4,346,653 + +0.6 4,346,659 - +0.3 4,346,659 - -0.2 4,346,659 - -1.0 4,346,659 - +0.0 4,346,659 - -1.0 4,346,659 - -0.1 4,346,659 - -1.3 4,346,659 - -0.8 4,346,659 - -1.1 4,346,659 - -1.7 4,346,659 - -0.2 4,346,659 - +0.8 4,346,669 + -0.3 4,346,674 - -0.1 4,346,677 - -0.6 4,346,682 - +0.9 4,346,687 - -0.9 4,346,687 - -0.2 4,346,693 - +1.1 4,346,695 + -1.4 4,346,703 - -0.3 4,346,703 - -2.0 4,346,703 - -1.2 4,346,703 - -1.3 4,346,703 - +0.0 4,346,703 - +0.4 4,346,703 - +0.8 4,346,713 + -0.2 4,346,742 - +0.4 4,346,755 + -0.7 4,346,772 + +0.1 4,346,772 + +0.4 4,346,777 + -1.0 4,346,780 - +0.2 4,346,780 - +0.7 4,346,780 - -0.5 4,346,814 + -1.3 4,346,814 + -0.3 4,346,814 + +0.1 4,346,814 - -0.2 4,346,822 - +0.6 4,346,822 - -0.5 4,346,822 - -0.2 4,346,827 - GFF4345 0.12 -1.1 4,346,827 - GFF4345 0.12 +0.6 4,346,838 + GFF4345 0.19 -0.4 4,346,846 - GFF4345 0.23 +0.2 4,346,848 + GFF4345 0.24 +1.0 4,346,856 - GFF4345 0.29 +0.1 4,346,891 + GFF4345 0.49 +0.6 4,346,891 + GFF4345 0.49 -1.1 4,346,894 - GFF4345 0.50 -1.2 4,346,899 - GFF4345 0.53 -0.5 4,346,899 - GFF4345 0.53 +0.2 4,346,930 + GFF4345 0.71 +0.1 4,346,935 + GFF4345 0.73 +0.4 4,346,935 + GFF4345 0.73 -0.2 4,346,957 - GFF4345 0.86 +0.0 4,346,985 + +0.8 4,346,990 + -2.8 4,346,996 + +1.0 4,347,006 + +1.7 4,347,006 + +0.6 4,347,011 + +0.3 4,347,011 + +0.3 4,347,014 - -1.1 4,347,016 - +0.3 4,347,025 - -0.1 4,347,030 - -0.4 4,347,601 + +0.4 4,347,605 + -1.4 4,347,605 + +1.9 4,347,611 + -0.6 4,347,611 + -0.2 4,347,612 + -0.3 4,347,619 - +0.6 4,347,619 - -0.0 4,347,619 - +0.9 4,347,619 - +0.5 4,347,620 - +0.6 4,347,627 - -0.4 4,347,629 - -0.4 4,347,640 + +0.5 4,347,641 + +0.4 4,347,648 - +0.5 4,347,649 - +0.4 4,347,659 + +0.5 4,347,676 + -0.1 4,347,676 - -0.2 4,347,683 + +0.2 4,347,683 + -1.0 4,347,683 + +0.2 4,347,683 + -0.6 4,347,683 - -0.9 4,347,685 + -0.7 4,347,685 + -0.8 4,347,688 - +0.2 4,347,691 - -1.1 4,347,691 - +0.3 4,347,691 - -2.0 4,347,702 + -0.0 4,347,702 + +0.8 4,347,702 + -1.3 4,347,702 + -2.4 4,347,732 - +0.7 4,347,732 - -0.9 4,347,732 - -0.2 4,347,734 + +0.2 4,347,734 + -0.3 4,347,737 - -0.4 4,347,742 - -0.1 4,347,742 - -1.3 4,347,742 - -0.5 4,347,742 - -1.1 4,347,742 - -0.2 4,347,742 - -0.1 4,347,742 - -0.8 4,347,742 - -1.3 4,347,742 - -0.9 4,347,745 + -1.7 4,347,778 - +0.5 4,347,791 + +0.0 4,347,846 + -0.8 4,347,847 + +1.0 4,347,847 + -0.1 4,347,847 + -0.2 4,347,850 - +0.2 4,347,850 - +0.8 4,347,855 - +0.6 4,347,863 + -0.5 4,347,867 - -0.0 4,347,883 - -2.7 4,347,885 + -1.1 4,347,885 + -0.7 4,347,885 - +1.0 4,347,908 + +0.2 4,347,916 - +0.3 4,347,916 - +0.8 4,347,939 - +0.6 4,347,943 + +0.4 4,347,943 + -0.8 4,347,943 + -0.2 4,347,951 - -1.1 4,347,951 - -1.7 4,347,951 - -0.6 4,347,953 + +1.0 4,347,953 + -0.8 4,347,961 - -1.2 4,347,961 - -0.1 4,347,961 - -1.9 4,347,969 + -0.2
Or see this region's nucleotide sequence