Strain Fitness in Sphingobium sp. HT1-2 around GFF4231

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,247,402	+		GFF4230	0.32	+0.0
4,247,420	+		GFF4230	0.33	+0.5
4,247,470	+		GFF4230	0.37	-0.1
4,247,500	+		GFF4230	0.39	+0.0
4,247,500	+		GFF4230	0.39	+0.0
4,247,500	+		GFF4230	0.39	+0.7
4,247,500	+		GFF4230	0.39	+0.5
4,247,500	+		GFF4230	0.39	+0.0
4,247,508	-		GFF4230	0.40	-2.1
4,247,508	-		GFF4230	0.40	-0.4
4,247,508	-		GFF4230	0.40	-1.6
4,247,508	-		GFF4230	0.40	-0.7
4,247,508	-		GFF4230	0.40	-1.4
4,247,508	-		GFF4230	0.40	-0.0
4,247,508	-		GFF4230	0.40	-0.0
4,247,521	+		GFF4230	0.41	+0.6
4,247,521	+		GFF4230	0.41	-2.1
4,247,521	+		GFF4230	0.41	-2.3
4,247,521	+		GFF4230	0.41	+1.3
4,247,529	-		GFF4230	0.42	+0.3
4,247,529	-		GFF4230	0.42	-2.4
4,247,529	-		GFF4230	0.42	-0.6
4,247,529	-		GFF4230	0.42	-2.0
4,247,533	-		GFF4230	0.42	-0.8
4,247,544	+		GFF4230	0.43	+0.5
4,247,546	+		GFF4230	0.43	-0.6
4,247,566	-		GFF4230	0.44	-0.4
4,247,615	+		GFF4230	0.48	-0.6
4,247,623	+		GFF4230	0.49	+1.2
4,247,628	+		GFF4230	0.49	-0.2
4,247,631	-		GFF4230	0.49	-2.1
4,247,679	-		GFF4230	0.53	-1.6
4,247,683	-		GFF4230	0.53	-1.5
4,247,742	-		GFF4230	0.58	+0.1
4,247,770	+		GFF4230	0.60	-0.8
4,247,832	+		GFF4230	0.65	-1.6
4,247,840	-		GFF4230	0.65	-0.4
4,247,840	-		GFF4230	0.65	+0.9
4,247,840	-		GFF4230	0.65	-0.8
4,247,894	-		GFF4230	0.70	-1.6
4,247,920	+		GFF4230	0.72	-3.1
4,248,000	-		GFF4230	0.78	-1.0
4,248,001	-		GFF4230	0.78	+0.6
4,248,002	-		GFF4230	0.78	-1.8
4,248,010	+		GFF4230	0.78	-0.1
4,248,010	+		GFF4230	0.78	-1.5
4,248,015	+		GFF4230	0.79	+0.5
4,248,015	+		GFF4230	0.79	-0.7
4,248,018	-		GFF4230	0.79	-1.8
4,248,018	-		GFF4230	0.79	-1.6
4,248,018	-		GFF4230	0.79	+0.4
4,248,020	+		GFF4230	0.79	-2.0
4,248,023	+		GFF4230	0.79	-1.2
4,248,025	+		GFF4230	0.80	-0.9
4,248,025	+		GFF4230	0.80	-0.2
4,248,025	+		GFF4230	0.80	-2.3
4,248,065	-		GFF4230	0.83	-1.0
4,248,117	+		GFF4230	0.87	-2.9
4,248,117	+		GFF4230	0.87	-0.5
4,248,117	+		GFF4230	0.87	-0.6
4,248,200	-				-1.9
4,248,237	-				+0.4
4,248,237	-				+0.3
4,248,247	-				-0.6
4,248,249	+				+0.2
4,248,259	-				-1.0
4,248,260	-				-0.6
4,248,289	+				+0.1
4,248,312	-				-1.5
4,248,314	+				+1.2
4,248,317	+				-1.4
4,248,317	+				+0.2
4,248,325	-				-0.5
4,248,335	+				-0.2
4,248,336	+				-1.4
4,248,336	+				-0.2
4,248,373	+				-0.3
4,248,395	+				-1.0
4,248,417	+				+1.2
4,248,424	-				-1.8
4,248,461	-				-0.6
4,248,502	-		GFF4231	0.13	-1.5
4,248,518	-		GFF4231	0.14	+1.2
4,248,526	-		GFF4231	0.15	-0.3
4,248,531	-		GFF4231	0.16	-2.1
4,248,538	-		GFF4231	0.17	+0.4
4,248,626	-		GFF4231	0.26	+1.5
4,248,632	-		GFF4231	0.27	-0.0
4,248,634	+		GFF4231	0.27	+0.1
4,248,638	+		GFF4231	0.27	-0.6
4,248,639	-		GFF4231	0.27	+0.7
4,248,643	+		GFF4231	0.28	+0.3
4,248,648	+		GFF4231	0.28	+1.3
4,248,655	+		GFF4231	0.29	-0.8
4,248,656	-		GFF4231	0.29	-0.7
4,248,663	-		GFF4231	0.30	-0.7
4,248,663	-		GFF4231	0.30	-2.6
4,248,673	+		GFF4231	0.31	-0.9
4,248,698	-		GFF4231	0.34	-1.6
4,248,700	-		GFF4231	0.34	+1.4
4,248,727	-		GFF4231	0.37	+1.1
4,248,727	-		GFF4231	0.37	-2.6
4,248,743	-		GFF4231	0.38	+0.3
4,248,756	-		GFF4231	0.40	-1.7
4,248,758	-		GFF4231	0.40	-0.0
4,248,758	-		GFF4231	0.40	+0.3
4,248,758	-		GFF4231	0.40	-1.1
4,248,788	+		GFF4231	0.43	-0.0
4,248,788	+		GFF4231	0.43	-1.6
4,248,796	-		GFF4231	0.44	-0.9
4,248,796	-		GFF4231	0.44	-0.1
4,248,809	+		GFF4231	0.46	+0.8
4,248,815	+		GFF4231	0.46	+0.3
4,248,821	+		GFF4231	0.47	-2.5
4,248,829	-		GFF4231	0.48	-0.4
4,248,844	-		GFF4231	0.49	-2.0
4,248,852	+		GFF4231	0.50	+0.4
4,248,870	+		GFF4231	0.52	+0.6
4,248,889	-		GFF4231	0.54	-1.9
4,248,928	+		GFF4231	0.58	-2.6
4,248,928	+		GFF4231	0.58	+0.8
4,248,936	-		GFF4231	0.59	-2.7
4,248,957	+		GFF4231	0.61	-0.8
4,248,957	+		GFF4231	0.61	-0.6
4,248,965	-		GFF4231	0.62	-0.0
4,248,965	-		GFF4231	0.62	-1.6
4,248,965	-		GFF4231	0.62	-1.9
4,248,965	-		GFF4231	0.62	-1.8
4,248,965	-		GFF4231	0.62	+0.4
4,249,003	-		GFF4231	0.66	-0.7
4,249,011	-		GFF4231	0.67	-0.3
4,249,039	+		GFF4231	0.70	-2.2
4,249,148	-		GFF4231	0.82	-0.6
4,249,148	-		GFF4231	0.82	+1.2
4,249,160	+		GFF4231	0.83	-1.6
4,249,168	-		GFF4231	0.84	-1.9
4,249,168	-		GFF4231	0.84	-0.9
4,249,168	-		GFF4231	0.84	+0.2
4,249,168	-		GFF4231	0.84	-0.7
4,249,210	+		GFF4231	0.89	-1.9
4,249,238	-				+0.3
4,249,276	-				-0.5
4,249,326	-				-2.3
4,249,326	-				-2.1
4,249,367	-				-0.2
4,249,415	-		GFF4232	0.11	+0.3
4,249,515	+		GFF4232	0.23	-2.2
4,249,515	+		GFF4232	0.23	-0.9
4,249,523	-		GFF4232	0.24	+1.5
4,249,523	-		GFF4232	0.24	+1.0
4,249,527	+		GFF4232	0.24	-0.5
4,249,532	+		GFF4232	0.25	-2.3
4,249,535	-		GFF4232	0.25	-1.7
4,249,535	-		GFF4232	0.25	+0.1
4,249,546	-		GFF4232	0.26	-0.3
4,249,592	-		GFF4232	0.32	-0.2
4,249,642	+		GFF4232	0.38	+0.8
4,249,667	+		GFF4232	0.41	-0.3
4,249,774	+		GFF4232	0.53	+0.5
4,249,774	+		GFF4232	0.53	+0.0
4,249,774	+		GFF4232	0.53	+0.1
4,249,774	+		GFF4232	0.53	+0.6
4,249,774	+		GFF4232	0.53	+0.1
4,249,782	-		GFF4232	0.54	-0.6
4,249,796	+		GFF4232	0.56	-0.3
4,249,796	+		GFF4232	0.56	-0.7
4,249,796	+		GFF4232	0.56	+0.7
4,249,796	+		GFF4232	0.56	+0.1
4,249,804	-		GFF4232	0.57	-0.8
4,249,804	-		GFF4232	0.57	+0.5
4,249,811	-		GFF4232	0.58	+0.3
4,249,816	-		GFF4232	0.58	-0.5
4,249,830	+		GFF4232	0.60	-0.6
4,249,833	-		GFF4232	0.60	-0.3
4,249,843	+		GFF4232	0.62	-0.4
4,249,847	+		GFF4232	0.62	-0.4
4,249,867	+		GFF4232	0.65	+0.0
4,249,874	-		GFF4232	0.65	+0.7
4,249,876	-		GFF4232	0.66	+0.1
4,249,907	-		GFF4232	0.69	-0.3
4,249,907	-		GFF4232	0.69	+1.4
4,249,907	-		GFF4232	0.69	-0.9
4,249,908	-		GFF4232	0.69	-0.2
4,249,913	-		GFF4232	0.70	-1.6
4,249,931	+		GFF4232	0.72	-1.3
4,249,977	-		GFF4232	0.78	+0.3
4,250,005	+		GFF4232	0.81	-0.9
4,250,023	-		GFF4232	0.83	-0.6
4,250,049	+		GFF4232	0.86	-0.7
4,250,057	-		GFF4232	0.87	-2.9
4,250,081	-				-0.8
4,250,088	-				+0.1
4,250,102	+				-1.3
4,250,112	-				-0.0
4,250,121	-				-0.7
4,250,121	-				-0.6
4,250,143	+				-0.3
4,250,151	-				-0.0
4,250,165	-				+1.7
4,250,238	-				-1.3
4,250,306	-				-1.5
4,250,316	-				-2.6