Strain Fitness in Sphingobium sp. HT1-2 around GFF4229

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,244,378	+				+0.8
4,244,378	+				-0.3
4,244,379	+				+1.3
4,244,386	-				-0.6
4,244,386	-				-0.1
4,244,387	+				-0.3
4,244,387	-				-0.5
4,244,388	+				-1.8
4,244,388	+				+1.0
4,244,388	+				-0.6
4,244,391	-				+1.2
4,244,391	-				-0.8
4,244,391	-				-1.4
4,244,396	-				-1.3
4,244,396	-				+0.7
4,244,396	-				-0.5
4,244,396	-				-0.2
4,244,396	-				+0.4
4,244,404	+				-0.0
4,244,404	+				-0.2
4,244,404	+				-1.2
4,244,412	-				-0.4
4,244,412	-				+0.4
4,244,412	-				-0.1
4,244,412	-				-0.4
4,244,412	-				-0.2
4,244,417	+				-1.7
4,244,417	+				+1.2
4,244,422	+				-1.1
4,244,425	-				-1.8
4,244,425	-				+0.1
4,244,430	-				+0.4
4,244,430	-				-1.6
4,244,430	-				+1.0
4,244,437	+				+0.3
4,244,451	+				+0.2
4,244,463	-				+0.3
4,244,463	-				-0.0
4,244,477	-				-0.0
4,244,512	-				+0.9
4,244,527	-				-1.1
4,244,531	+		GFF4228	0.11	-1.2
4,244,562	+		GFF4228	0.16	-1.1
4,244,583	+		GFF4228	0.20	+1.2
4,244,589	+		GFF4228	0.21	-0.3
4,244,593	-		GFF4228	0.22	+1.6
4,244,611	+		GFF4228	0.25	+0.2
4,244,611	-		GFF4228	0.25	-1.6
4,244,619	-		GFF4228	0.26	-1.7
4,244,635	+		GFF4228	0.29	-0.2
4,244,635	+		GFF4228	0.29	-0.1
4,244,635	+		GFF4228	0.29	+1.6
4,244,643	-		GFF4228	0.30	-0.5
4,244,643	-		GFF4228	0.30	-0.8
4,244,643	-		GFF4228	0.30	-0.4
4,244,650	-		GFF4228	0.32	-1.1
4,244,659	+		GFF4228	0.33	-1.6
4,244,667	+		GFF4228	0.35	+0.2
4,244,667	+		GFF4228	0.35	+0.7
4,244,667	-		GFF4228	0.35	-0.2
4,244,676	-		GFF4228	0.36	-2.0
4,244,680	+		GFF4228	0.37	-0.7
4,244,687	+		GFF4228	0.38	+0.8
4,244,697	+		GFF4228	0.40	-0.1
4,244,697	+		GFF4228	0.40	+0.3
4,244,697	+		GFF4228	0.40	+0.5
4,244,697	+		GFF4228	0.40	-0.8
4,244,705	+		GFF4228	0.41	-1.1
4,244,705	-		GFF4228	0.41	-0.1
4,244,712	+		GFF4228	0.43	-1.0
4,244,728	+		GFF4228	0.46	+0.9
4,244,730	-		GFF4228	0.46	-1.0
4,244,730	-		GFF4228	0.46	+0.9
4,244,754	-		GFF4228	0.50	+0.0
4,244,781	-		GFF4228	0.55	-1.7
4,244,784	+		GFF4228	0.55	+0.3
4,244,784	+		GFF4228	0.55	+0.5
4,244,784	+		GFF4228	0.55	+0.3
4,244,784	+		GFF4228	0.55	-1.6
4,244,786	+		GFF4228	0.56	-0.2
4,244,792	-		GFF4228	0.57	+0.5
4,244,792	-		GFF4228	0.57	-1.3
4,244,792	-		GFF4228	0.57	+0.7
4,244,797	+		GFF4228	0.58	-1.1
4,244,802	-		GFF4228	0.59	-2.4
4,244,805	+		GFF4228	0.59	-1.6
4,244,808	-		GFF4228	0.60	-0.4
4,244,808	-		GFF4228	0.60	-0.4
4,244,813	-		GFF4228	0.61	-0.4
4,244,921	-		GFF4228	0.80	-1.3
4,245,156	+				-1.2
4,245,160	-				-0.3
4,245,163	-				+0.5
4,245,174	-				-2.3
4,245,222	+				-2.1
4,245,222	+				+0.1
4,245,256	+				-2.1
4,245,256	+				-1.6
4,245,256	+				-0.9
4,245,264	-				-0.3
4,245,278	-				-0.3
4,245,317	-				-0.0
4,245,317	-				-1.2
4,245,317	-				+0.4
4,245,341	-				-1.3
4,245,341	-				+0.0
4,245,341	-				+0.1
4,245,352	-				+1.3
4,245,364	+				+1.4
4,245,379	-				-0.0
4,245,383	+				-1.2
4,245,387	-				+0.2
4,245,390	-				-2.6
4,245,401	-				+0.8
4,245,412	+				-0.6
4,245,418	-				-0.1
4,245,418	-				+1.0
4,245,420	-				+0.5
4,245,422	+				+0.3
4,245,425	-				-2.2
4,245,430	-				-0.2
4,245,450	+				-0.0
4,245,482	+				-0.5
4,245,482	+				+0.5
4,245,482	+				-0.8
4,245,482	+				-0.3
4,245,490	-				+0.8
4,245,490	-				-0.0
4,245,490	-				+0.4
4,245,519	-				-2.0
4,245,525	+				-0.5
4,245,527	+				-0.8
4,245,527	+				+0.3
4,245,527	+				-1.7
4,245,533	-		GFF4229	0.10	-2.0
4,245,535	-		GFF4229	0.10	-1.0
4,245,548	+		GFF4229	0.11	-0.5
4,245,556	-		GFF4229	0.12	+0.4
4,245,557	+		GFF4229	0.12	-1.4
4,245,560	+		GFF4229	0.12	+0.4
4,245,560	+		GFF4229	0.12	-1.3
4,245,560	+		GFF4229	0.12	-2.3
4,245,568	+		GFF4229	0.12	-2.8
4,245,568	+		GFF4229	0.12	-2.1
4,245,576	-		GFF4229	0.13	+0.3
4,245,579	+		GFF4229	0.13	+1.7
4,245,579	+		GFF4229	0.13	-1.2
4,245,579	+		GFF4229	0.13	-0.5
4,245,579	+		GFF4229	0.13	+0.1
4,245,579	+		GFF4229	0.13	-1.9
4,245,579	+		GFF4229	0.13	-0.5
4,245,579	+		GFF4229	0.13	+0.2
4,245,579	+		GFF4229	0.13	+1.2
4,245,584	+		GFF4229	0.13	-1.3
4,245,587	-		GFF4229	0.14	-0.9
4,245,587	-		GFF4229	0.14	-0.5
4,245,587	-		GFF4229	0.14	-0.3
4,245,587	-		GFF4229	0.14	-0.1
4,245,587	-		GFF4229	0.14	-0.1
4,245,587	-		GFF4229	0.14	-0.8
4,245,587	-		GFF4229	0.14	-0.4
4,245,587	-		GFF4229	0.14	-0.2
4,245,592	-		GFF4229	0.14	-0.8
4,245,597	-		GFF4229	0.14	+0.0
4,245,604	+		GFF4229	0.15	-0.7
4,245,606	+		GFF4229	0.15	-1.5
4,245,608	+		GFF4229	0.15	-0.1
4,245,609	-		GFF4229	0.15	-0.0
4,245,612	-		GFF4229	0.15	+0.2
4,245,612	-		GFF4229	0.15	-0.6
4,245,614	-		GFF4229	0.15	-0.1
4,245,614	-		GFF4229	0.15	+0.3
4,245,636	+		GFF4229	0.17	+0.7
4,245,636	+		GFF4229	0.17	+0.6
4,245,636	+		GFF4229	0.17	-1.9
4,245,640	-		GFF4229	0.17	-0.6
4,245,641	+		GFF4229	0.17	-1.3
4,245,655	+		GFF4229	0.18	-0.7
4,245,696	-		GFF4229	0.20	+1.2
4,245,745	+		GFF4229	0.24	+0.3
4,245,810	+		GFF4229	0.28	-0.8
4,245,831	+		GFF4229	0.29	-0.3
4,245,837	+		GFF4229	0.29	+0.0
4,245,839	-		GFF4229	0.30	+0.0
4,245,839	-		GFF4229	0.30	-0.3
4,245,842	+		GFF4229	0.30	-1.2
4,245,847	+		GFF4229	0.30	-0.3
4,245,847	+		GFF4229	0.30	+0.1
4,245,850	+		GFF4229	0.30	+1.1
4,245,877	+		GFF4229	0.32	-1.8
4,245,878	-		GFF4229	0.32	-2.6
4,245,885	-		GFF4229	0.33	-0.2
4,245,967	-		GFF4229	0.38	-1.7
4,246,212	-		GFF4229	0.53	-0.2
4,246,230	+		GFF4229	0.54	+1.3
4,246,238	-		GFF4229	0.55	+0.3
4,246,240	-		GFF4229	0.55	+0.5
4,246,245	+		GFF4229	0.55	+0.4
4,246,255	-		GFF4229	0.56	+0.3
4,246,286	-		GFF4229	0.58	+0.0
4,246,306	-		GFF4229	0.59	+0.2
4,246,327	-		GFF4229	0.61	-0.4
4,246,361	+		GFF4229	0.63	-0.6
4,246,364	-		GFF4229	0.63	-1.0
4,246,364	-		GFF4229	0.63	+0.5
4,246,366	+		GFF4229	0.63	+1.0
4,246,395	+		GFF4229	0.65	-1.6
4,246,413	-		GFF4229	0.66	-0.8
4,246,427	-		GFF4229	0.67	-0.7
4,246,432	+		GFF4229	0.67	-1.7
4,246,432	+		GFF4229	0.67	-1.1
4,246,438	-		GFF4229	0.68	-0.8
4,246,438	-		GFF4229	0.68	+0.8
4,246,440	-		GFF4229	0.68	-0.2
4,246,440	-		GFF4229	0.68	+0.4
4,246,440	-		GFF4229	0.68	-0.0
4,246,440	-		GFF4229	0.68	-0.7
4,246,455	+		GFF4229	0.69	+0.7
4,246,466	-		GFF4229	0.69	-0.9
4,246,469	-		GFF4229	0.70	+0.2
4,246,469	-		GFF4229	0.70	+0.2
4,246,471	+		GFF4229	0.70	-1.8
4,246,471	-		GFF4229	0.70	-0.2
4,246,481	+		GFF4229	0.70	-1.5
4,246,486	+		GFF4229	0.71	-0.3
4,246,488	+		GFF4229	0.71	-0.9
4,246,488	+		GFF4229	0.71	-1.6
4,246,489	-		GFF4229	0.71	-2.3
4,246,504	+		GFF4229	0.72	-1.0
4,246,541	+		GFF4229	0.74	+0.1
4,246,564	+		GFF4229	0.76	-0.5
4,246,572	-		GFF4229	0.76	-0.0
4,246,615	-		GFF4229	0.79	-0.6
4,246,621	+		GFF4229	0.79	-2.5
4,246,638	+		GFF4229	0.80	+0.5
4,246,642	+		GFF4229	0.81	-0.3
4,246,645	-		GFF4229	0.81	-1.1
4,246,648	+		GFF4229	0.81	-0.5
4,246,648	+		GFF4229	0.81	-0.2
4,246,648	+		GFF4229	0.81	-0.2
4,246,650	-		GFF4229	0.81	-0.9
4,246,656	-		GFF4229	0.82	+0.9
4,246,656	-		GFF4229	0.82	-2.5
4,246,656	-		GFF4229	0.82	-0.3
4,246,656	-		GFF4229	0.82	-0.2
4,246,656	-		GFF4229	0.82	-0.8
4,246,673	-		GFF4229	0.83	+0.3
4,246,673	-		GFF4229	0.83	+0.7
4,246,678	+		GFF4229	0.83	-1.0
4,246,680	+		GFF4229	0.83	-0.9
4,246,685	+		GFF4229	0.83	-0.6
4,246,688	-		GFF4229	0.84	-1.7
4,246,690	+		GFF4229	0.84	-2.0
4,246,690	+		GFF4229	0.84	+0.5
4,246,693	-		GFF4229	0.84	+0.3
4,246,695	+		GFF4229	0.84	-0.2
4,246,695	+		GFF4229	0.84	-1.7
4,246,698	-		GFF4229	0.84	+0.3
4,246,698	-		GFF4229	0.84	-0.3
4,246,698	-		GFF4229	0.84	+0.9
4,246,733	-		GFF4229	0.86	-0.7
4,246,737	-		GFF4229	0.87	-0.4
4,246,770	-		GFF4229	0.89	-0.9
4,246,770	-		GFF4229	0.89	+1.4
4,246,794	-				+0.3
4,246,806	-				+0.5
4,246,818	-				-0.4
4,246,840	-				-0.9
4,246,840	-				+1.0
4,246,840	-				+0.1
4,246,850	-				-1.6
4,246,850	-				-1.5
4,246,856	-				-1.7
4,246,861	+				-2.1
4,246,862	+				-0.0
4,246,867	-				+0.2
4,246,870	-				-0.3
4,246,870	-				-1.4
4,246,913	-				+1.6
4,246,913	-				-0.5
4,246,915	+				-0.9
4,246,915	+				-1.2
4,246,915	+				-1.2
4,246,926	+				+0.2
4,246,934	+				-1.1
4,246,934	+				-1.3
4,246,936	+				-2.1
4,246,942	-				+0.2
4,246,944	-				-0.6
4,246,948	+				-0.8
4,246,981	+				-0.3
4,246,993	+				-1.7
4,246,994	-				+0.6
4,246,998	+				+0.3
4,246,998	+				-0.3
4,246,998	+				-2.3
4,247,003	+				-0.2
4,247,006	-				-0.2
4,247,006	-				-0.2
4,247,006	-				+0.5
4,247,006	-				+0.1
4,247,006	-				-1.4
4,247,020	-				-1.1
4,247,034	-				-1.3
4,247,063	-				-0.4
4,247,113	+				-1.7
4,247,113	+				-0.1
4,247,153	-		GFF4230	0.13	-0.6
4,247,231	+		GFF4230	0.19	-3.0
4,247,244	+		GFF4230	0.20	-1.6
4,247,290	-		GFF4230	0.23	-2.8
4,247,297	+		GFF4230	0.24	+0.9
4,247,301	+		GFF4230	0.24	-0.6
4,247,306	+		GFF4230	0.24	+0.4
4,247,309	-		GFF4230	0.25	-2.3
4,247,309	-		GFF4230	0.25	+0.3
4,247,309	-		GFF4230	0.25	-0.0
4,247,309	-		GFF4230	0.25	+0.3
4,247,309	-		GFF4230	0.25	-0.3
4,247,365	-		GFF4230	0.29	-1.4
4,247,402	+		GFF4230	0.32	+0.0
4,247,420	+		GFF4230	0.33	+0.5
4,247,470	+		GFF4230	0.37	-0.1
4,247,500	+		GFF4230	0.39	+0.0
4,247,500	+		GFF4230	0.39	+0.0
4,247,500	+		GFF4230	0.39	+0.7
4,247,500	+		GFF4230	0.39	+0.5
4,247,500	+		GFF4230	0.39	+0.0
4,247,508	-		GFF4230	0.40	-2.1
4,247,508	-		GFF4230	0.40	-0.4
4,247,508	-		GFF4230	0.40	-1.6
4,247,508	-		GFF4230	0.40	-0.7
4,247,508	-		GFF4230	0.40	-1.4
4,247,508	-		GFF4230	0.40	-0.0
4,247,508	-		GFF4230	0.40	-0.0
4,247,521	+		GFF4230	0.41	+0.6
4,247,521	+		GFF4230	0.41	-2.1
4,247,521	+		GFF4230	0.41	-2.3
4,247,521	+		GFF4230	0.41	+1.3
4,247,529	-		GFF4230	0.42	+0.3
4,247,529	-		GFF4230	0.42	-2.4
4,247,529	-		GFF4230	0.42	-0.6
4,247,529	-		GFF4230	0.42	-2.0
4,247,533	-		GFF4230	0.42	-0.8
4,247,544	+		GFF4230	0.43	+0.5
4,247,546	+		GFF4230	0.43	-0.6
4,247,566	-		GFF4230	0.44	-0.4
4,247,615	+		GFF4230	0.48	-0.6
4,247,623	+		GFF4230	0.49	+1.2
4,247,628	+		GFF4230	0.49	-0.2
4,247,631	-		GFF4230	0.49	-2.1
4,247,679	-		GFF4230	0.53	-1.6
4,247,683	-		GFF4230	0.53	-1.5
4,247,742	-		GFF4230	0.58	+0.1
4,247,770	+		GFF4230	0.60	-0.8
4,247,832	+		GFF4230	0.65	-1.6
4,247,840	-		GFF4230	0.65	-0.4
4,247,840	-		GFF4230	0.65	+0.9
4,247,840	-		GFF4230	0.65	-0.8
4,247,894	-		GFF4230	0.70	-1.6
4,247,920	+		GFF4230	0.72	-3.1