Strain Fitness in Sphingobium sp. HT1-2 around GFF4175

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,193,464	+				-0.2
4,193,522	+				+0.9
4,193,530	+				-0.6
4,193,530	-				-1.0
4,193,537	-				-0.3
4,193,600	+				-0.7
4,193,600	+				-2.3
4,193,600	+				-0.3
4,193,630	+				-0.3
4,193,630	+				+0.8
4,193,635	+				+0.1
4,193,638	-				-2.0
4,193,638	-				-0.8
4,193,640	+				-1.9
4,193,640	+				+0.7
4,193,640	+				-1.2
4,193,640	+				-1.4
4,193,652	+		GFF4174	0.10	+0.4
4,193,660	-		GFF4174	0.12	-0.8
4,193,660	-		GFF4174	0.12	-0.3
4,193,680	+		GFF4174	0.15	-1.7
4,193,680	+		GFF4174	0.15	+0.1
4,193,680	+		GFF4174	0.15	+0.4
4,193,688	-		GFF4174	0.16	+1.2
4,193,690	+		GFF4174	0.17	-0.9
4,193,693	-		GFF4174	0.17	-0.1
4,193,698	+		GFF4174	0.18	+0.3
4,193,698	+		GFF4174	0.18	-0.7
4,193,698	+		GFF4174	0.18	-0.7
4,193,698	+		GFF4174	0.18	-1.1
4,193,698	+		GFF4174	0.18	+0.0
4,193,698	+		GFF4174	0.18	-0.2
4,193,698	+		GFF4174	0.18	+0.5
4,193,702	+		GFF4174	0.19	-0.7
4,193,706	-		GFF4174	0.19	+0.9
4,193,714	-		GFF4174	0.21	-0.4
4,193,723	+		GFF4174	0.22	-0.6
4,193,730	-		GFF4174	0.23	+0.2
4,193,731	-		GFF4174	0.23	-0.2
4,193,731	-		GFF4174	0.23	+1.3
4,193,734	+		GFF4174	0.24	-0.1
4,193,741	+		GFF4174	0.25	+0.6
4,193,748	+		GFF4174	0.26	+0.1
4,193,749	-		GFF4174	0.26	-1.0
4,193,749	-		GFF4174	0.26	-1.8
4,193,768	+		GFF4174	0.30	-0.2
4,193,790	-		GFF4174	0.33	+0.1
4,193,792	-		GFF4174	0.33	-0.1
4,193,861	+		GFF4174	0.45	-0.8
4,193,861	+		GFF4174	0.45	-0.5
4,193,869	-		GFF4174	0.46	-0.4
4,193,869	-		GFF4174	0.46	-0.9
4,193,869	-		GFF4174	0.46	+0.4
4,193,869	-		GFF4174	0.46	-0.8
4,193,869	-		GFF4174	0.46	+0.4
4,193,876	+		GFF4174	0.47	+0.0
4,193,876	+		GFF4174	0.47	+0.0
4,193,881	+		GFF4174	0.48	+0.1
4,193,881	+		GFF4174	0.48	+1.0
4,193,884	-		GFF4174	0.49	-1.1
4,193,889	-		GFF4174	0.50	-0.1
4,193,890	-		GFF4174	0.50	+0.1
4,193,892	+		GFF4174	0.50	-0.3
4,193,907	+		GFF4174	0.52	-0.3
4,193,911	+		GFF4174	0.53	-0.4
4,193,915	-		GFF4174	0.54	-0.5
4,193,915	-		GFF4174	0.54	-2.2
4,193,915	-		GFF4174	0.54	+0.1
4,193,919	-		GFF4174	0.54	-0.1
4,193,919	-		GFF4174	0.54	+0.2
4,193,919	-		GFF4174	0.54	+1.2
4,193,938	+		GFF4174	0.58	+0.1
4,193,950	+		GFF4174	0.60	-0.5
4,193,963	+		GFF4174	0.62	+0.8
4,193,971	-		GFF4174	0.63	+0.6
4,193,971	-		GFF4174	0.63	-0.8
4,194,005	+		GFF4174	0.69	+1.0
4,194,005	+		GFF4174	0.69	-0.4
4,194,005	+		GFF4174	0.69	-0.3
4,194,013	-		GFF4174	0.70	-0.3
4,194,013	-		GFF4174	0.70	-2.9
4,194,030	+		GFF4174	0.73	-0.8
4,194,038	-		GFF4174	0.74	-1.7
4,194,047	+		GFF4174	0.76	-1.0
4,194,047	+		GFF4174	0.76	+0.2
4,194,047	-		GFF4174	0.76	-0.7
4,194,055	-		GFF4174	0.77	-1.6
4,194,065	-		GFF4174	0.79	-1.5
4,194,087	+		GFF4174	0.82	-0.2
4,194,087	+		GFF4174	0.82	-1.6
4,194,087	+		GFF4174	0.82	-0.2
4,194,095	-		GFF4174	0.83	-1.7
4,194,095	-		GFF4174	0.83	+0.6
4,194,095	-		GFF4174	0.83	-1.2
4,194,095	-		GFF4174	0.83	+0.3
4,194,095	-		GFF4174	0.83	-1.5
4,194,095	-		GFF4174	0.83	-0.0
4,194,121	+		GFF4174	0.88	+0.2
4,194,121	+		GFF4174	0.88	+0.4
4,194,142	+				-0.8
4,194,150	-				-1.1
4,194,155	-				-1.7
4,194,197	-				+0.1
4,194,213	-				-1.8
4,194,221	-				-1.2
4,194,226	+				+1.7
4,194,234	+				-0.2
4,194,236	+				+0.1
4,194,239	+				-2.2
4,194,239	+				+0.0
4,194,239	+				-0.7
4,194,242	-				+0.4
4,194,242	-				-0.7
4,194,249	+				-0.2
4,194,249	+				+0.5
4,194,249	+				+0.5
4,194,249	+				-2.1
4,194,249	+				-0.1
4,194,257	-				-0.7
4,194,257	-				+0.6
4,194,257	-				+0.3
4,194,257	-				-0.8
4,194,268	-				+1.6
4,194,290	-				-0.2
4,194,323	+				-1.0
4,194,350	-				-1.7
4,194,376	-				-0.1
4,194,381	+		GFF4175	0.11	+0.4
4,194,386	+		GFF4175	0.15	-0.3
4,194,389	-		GFF4175	0.17	+1.2
4,194,401	+		GFF4175	0.26	+0.3
4,194,411	+		GFF4175	0.34	+0.2
4,194,411	+		GFF4175	0.34	+1.1
4,194,411	+		GFF4175	0.34	+0.3
4,194,413	+		GFF4175	0.36	+0.2
4,194,413	-		GFF4175	0.36	-0.8
4,194,428	+		GFF4175	0.47	+0.6
4,194,428	+		GFF4175	0.47	+0.2
4,194,428	+		GFF4175	0.47	-0.3
4,194,428	+		GFF4175	0.47	+0.3
4,194,430	+		GFF4175	0.49	+0.2
4,194,433	-		GFF4175	0.51	+0.8
4,194,435	+		GFF4175	0.53	+0.3
4,194,436	-		GFF4175	0.53	-0.1
4,194,438	-		GFF4175	0.55	-2.2
4,194,443	-		GFF4175	0.59	-0.5
4,194,443	-		GFF4175	0.59	+0.1
4,194,443	-		GFF4175	0.59	-2.0
4,194,445	+		GFF4175	0.60	-1.0
4,194,467	+		GFF4175	0.78	+0.6
4,194,467	+		GFF4175	0.78	-1.2
4,194,472	+		GFF4175	0.81	-1.8
4,194,472	+		GFF4175	0.81	-1.5
4,194,475	-		GFF4175	0.84	+0.1
4,194,475	-		GFF4175	0.84	+0.3
4,194,475	-		GFF4175	0.84	+0.2
4,194,475	-		GFF4175	0.84	+0.7
4,194,475	-		GFF4175	0.84	+0.2
4,194,475	-		GFF4175	0.84	-0.1
4,194,475	-		GFF4175	0.84	-0.2
4,194,478	-		GFF4175	0.86	-1.7
4,194,480	-		GFF4175	0.88	-0.2
4,194,480	-		GFF4175	0.88	-1.2
4,194,480	-		GFF4175	0.88	+0.6
4,194,484	+				+0.7
4,194,484	+				+0.4
4,194,485	-				+0.0
4,194,492	-				-0.2
4,194,492	-				-0.5
4,194,492	-				-1.2
4,194,492	-				-0.1
4,194,496	+				-0.5
4,194,496	+				-1.5
4,194,496	+				+0.9
4,194,496	+				-0.2
4,194,497	-				+0.8
4,194,497	-				+0.2
4,194,504	-				+0.9
4,194,504	-				+1.1
4,194,509	+				-1.0
4,194,509	+				+0.6
4,194,517	-				-0.4
4,194,517	-				-0.4
4,194,517	-				+0.2
4,194,517	-				-0.0
4,194,527	-				-0.1
4,195,366	-				-0.5
4,195,366	-				-1.4
4,195,366	-				+0.0
4,195,366	-				+0.1
4,195,377	+				+0.0
4,195,378	+				+0.1
4,195,378	+				+0.0
4,195,378	+				+0.1
4,195,383	+				-0.3
4,195,383	+				+0.3
4,195,385	+				-0.5
4,195,386	-				-0.2
4,195,386	-				-0.7
4,195,386	-				-1.5
4,195,386	-				-0.6
4,195,398	+				-0.9
4,195,398	+				-1.9
4,195,400	+				-0.1
4,195,421	-				-2.2
4,195,443	+				+0.3
4,195,449	+				-0.7
4,195,449	+				-0.2
4,195,449	+				-1.2
4,195,493	-				+0.8