Strain Fitness in Sphingobium sp. HT1-2 around GFF4120

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,142,221	+		GFF4119	0.66	-0.1
4,142,221	+		GFF4119	0.66	-0.7
4,142,229	-		GFF4119	0.67	+0.0
4,142,229	-		GFF4119	0.67	-0.9
4,142,229	-		GFF4119	0.67	+0.5
4,142,234	-		GFF4119	0.67	+1.2
4,142,234	-		GFF4119	0.67	+1.5
4,142,244	-		GFF4119	0.67	+1.3
4,142,252	-		GFF4119	0.68	-2.1
4,142,276	+		GFF4119	0.69	-2.1
4,142,276	-		GFF4119	0.69	-1.9
4,142,283	+		GFF4119	0.69	-0.1
4,142,283	+		GFF4119	0.69	+0.6
4,142,283	+		GFF4119	0.69	-1.9
4,142,284	-		GFF4119	0.69	-0.9
4,142,293	-		GFF4119	0.69	-0.9
4,142,303	-		GFF4119	0.70	-0.7
4,142,328	+		GFF4119	0.71	-0.5
4,142,328	-		GFF4119	0.71	+0.8
4,142,328	-		GFF4119	0.71	-1.8
4,142,345	+		GFF4119	0.72	-0.2
4,142,351	-		GFF4119	0.72	-1.6
4,142,353	-		GFF4119	0.72	-2.2
4,142,353	-		GFF4119	0.72	-0.7
4,142,380	-		GFF4119	0.73	+0.6
4,142,385	-		GFF4119	0.73	-1.9
4,142,397	+		GFF4119	0.74	+0.1
4,142,397	+		GFF4119	0.74	+0.9
4,142,405	-		GFF4119	0.74	-0.1
4,142,405	-		GFF4119	0.74	+0.7
4,142,405	-		GFF4119	0.74	-2.2
4,142,439	+		GFF4119	0.75	+1.3
4,142,439	+		GFF4119	0.75	+0.4
4,142,444	+		GFF4119	0.76	-1.7
4,142,447	-		GFF4119	0.76	-0.4
4,142,452	-		GFF4119	0.76	-2.7
4,142,452	-		GFF4119	0.76	-1.2
4,142,463	+		GFF4119	0.77	-0.3
4,142,465	+		GFF4119	0.77	-0.5
4,142,465	+		GFF4119	0.77	-0.6
4,142,465	+		GFF4119	0.77	-1.6
4,142,471	-		GFF4119	0.77	-0.5
4,142,473	-		GFF4119	0.77	-0.6
4,142,473	-		GFF4119	0.77	+1.2
4,142,473	-		GFF4119	0.77	-0.5
4,142,473	-		GFF4119	0.77	-2.0
4,142,479	+		GFF4119	0.77	-0.4
4,142,551	+		GFF4119	0.80	-0.8
4,142,558	-		GFF4119	0.81	-1.5
4,142,558	-		GFF4119	0.81	-1.6
4,142,558	-		GFF4119	0.81	+0.4
4,142,593	-		GFF4119	0.82	-1.8
4,142,639	+		GFF4119	0.84	+0.1
4,142,651	+		GFF4119	0.84	-0.6
4,142,651	+		GFF4119	0.84	-1.7
4,142,651	+		GFF4119	0.84	-0.5
4,142,651	+		GFF4119	0.84	+0.2
4,142,651	+		GFF4119	0.84	-1.9
4,142,652	-		GFF4119	0.85	-0.0
4,142,654	-		GFF4119	0.85	-0.6
4,142,654	-		GFF4119	0.85	+0.6
4,142,659	-		GFF4119	0.85	+0.6
4,142,659	-		GFF4119	0.85	+0.8
4,142,659	-		GFF4119	0.85	-0.8
4,142,661	+		GFF4119	0.85	+0.4
4,142,669	-		GFF4119	0.85	-0.0
4,142,669	-		GFF4119	0.85	+0.4
4,142,675	-		GFF4119	0.85	+0.2
4,142,676	+		GFF4119	0.86	-1.1
4,142,680	+		GFF4119	0.86	-0.7
4,142,684	-		GFF4119	0.86	-0.3
4,142,691	+		GFF4119	0.86	-0.6
4,142,699	+		GFF4119	0.87	-0.8
4,142,699	+		GFF4119	0.87	-1.2
4,142,704	+		GFF4119	0.87	+1.0
4,142,712	-		GFF4119	0.87	+0.8
4,142,712	-		GFF4119	0.87	-1.7
4,142,715	+		GFF4119	0.87	-1.5
4,142,715	+		GFF4119	0.87	-0.6
4,142,718	-		GFF4119	0.87	-0.2
4,142,718	-		GFF4119	0.87	-0.4
4,142,740	-		GFF4119	0.88	-1.0
4,142,764	+		GFF4119	0.89	+1.5
4,142,764	+		GFF4119	0.89	-0.0
4,142,772	-		GFF4119	0.90	+1.2
4,142,805	+				-0.5
4,142,805	+				-0.8
4,142,805	+				-1.3
4,142,805	+				-0.6
4,142,805	+				+0.3
4,142,813	-				-2.2
4,142,813	-				-0.4
4,142,813	-				-0.3
4,142,813	-				-0.5
4,142,818	-				-0.5
4,142,818	-				-0.7
4,142,844	+				-2.0
4,142,845	-				-0.8
4,142,847	-				-1.8
4,142,872	+				-0.1
4,142,872	+				-0.4
4,142,872	+				-1.6
4,142,880	-				-3.0
4,142,891	+				+1.0
4,142,898	+				-0.5
4,142,898	+				-0.6
4,142,906	-				-0.0
4,142,906	-				-1.0
4,142,917	+				-0.0
4,142,917	-				+0.8
4,142,920	-				-0.3
4,142,926	-				-0.4
4,142,968	-				+0.2
4,142,970	+				+1.6
4,142,976	+				-1.0
4,142,976	+				-1.0
4,142,984	-				-0.2
4,142,998	+				-0.4
4,143,010	+				+0.1
4,143,041	+				+0.1
4,143,041	+				-1.8
4,143,041	+				-1.6
4,143,041	+				+0.4
4,143,041	+				-2.7
4,143,044	-				-0.1
4,143,049	-				+0.2
4,143,049	-				-1.2
4,143,049	-				+0.7
4,143,049	-				-0.2
4,143,049	-				-0.3
4,143,049	-				-0.6
4,143,049	-				-0.2
4,143,049	-				+0.2
4,143,049	-				-0.0
4,143,049	-				-0.6
4,143,049	-				-0.4
4,143,049	-				+0.3
4,143,049	-				-0.4
4,143,054	-				-1.0
4,143,059	-				-1.0
4,143,096	+				+0.3
4,143,109	-				-1.0
4,143,129	+				-0.9
4,143,142	-				+0.3
4,143,147	+				+1.0
4,143,158	+				-0.0
4,143,166	-				+0.8
4,143,166	-				-1.8
4,143,176	-				-0.8
4,143,176	-				-1.0
4,143,176	-				+0.8
4,143,185	+				+1.5
4,143,185	+				+1.1
4,143,185	+				+2.0
4,143,185	+				+0.4
4,143,190	+				-0.8
4,143,193	-				+0.3
4,143,193	-				-0.6
4,143,193	-				+0.6
4,143,193	-				-0.7
4,143,202	+				-1.2
4,143,255	+				-0.8
4,143,258	-				+0.5
4,143,265	+				+1.0
4,143,265	+				-0.6
4,143,265	+				+0.2
4,143,268	-				-0.4
4,143,273	-				-0.3
4,143,273	-				-0.5
4,143,350	-				+0.6
4,143,350	-				-0.3
4,143,354	+		GFF4120	0.10	-0.6
4,143,361	+		GFF4120	0.11	+0.7
4,143,361	+		GFF4120	0.11	-0.4
4,143,361	+		GFF4120	0.11	-2.1
4,143,362	-		GFF4120	0.11	-0.2
4,143,362	-		GFF4120	0.11	-1.7
4,143,366	+		GFF4120	0.11	-0.9
4,143,369	-		GFF4120	0.11	-1.5
4,143,374	-		GFF4120	0.12	-0.0
4,143,375	-		GFF4120	0.12	-0.6
4,143,377	+		GFF4120	0.12	+0.6
4,143,404	-		GFF4120	0.14	-1.3
4,143,433	+		GFF4120	0.16	-0.7
4,143,485	-		GFF4120	0.20	-0.2
4,143,505	+		GFF4120	0.21	-2.1
4,143,528	-		GFF4120	0.23	+0.4
4,143,555	+		GFF4120	0.25	-0.3
4,143,574	-		GFF4120	0.26	-0.6
4,143,589	-		GFF4120	0.28	-0.2
4,143,610	+		GFF4120	0.29	-0.7
4,143,610	+		GFF4120	0.29	-0.5
4,143,616	-		GFF4120	0.30	+0.1
4,143,618	-		GFF4120	0.30	-0.3
4,143,618	-		GFF4120	0.30	+0.4
4,143,618	-		GFF4120	0.30	-0.5
4,143,618	-		GFF4120	0.30	-0.0
4,143,629	+		GFF4120	0.31	-2.3
4,143,643	-		GFF4120	0.32	-0.2
4,143,665	+		GFF4120	0.33	-0.2
4,143,665	+		GFF4120	0.33	+0.6
4,143,665	+		GFF4120	0.33	-0.1
4,143,665	+		GFF4120	0.33	-1.7
4,143,665	+		GFF4120	0.33	+1.3
4,143,665	+		GFF4120	0.33	-0.7
4,143,665	+		GFF4120	0.33	+0.3
4,143,673	-		GFF4120	0.34	+0.2
4,143,673	-		GFF4120	0.34	-0.2
4,143,673	-		GFF4120	0.34	-1.3
4,143,673	-		GFF4120	0.34	-0.4
4,143,673	-		GFF4120	0.34	+0.2
4,143,673	-		GFF4120	0.34	+1.0
4,143,673	-		GFF4120	0.34	-1.2
4,143,673	-		GFF4120	0.34	+0.4
4,143,673	-		GFF4120	0.34	-0.1
4,143,673	-		GFF4120	0.34	+0.6
4,143,673	-		GFF4120	0.34	-2.2
4,143,717	-		GFF4120	0.37	-0.3
4,143,717	-		GFF4120	0.37	+1.0
4,143,718	-		GFF4120	0.37	+0.2
4,143,722	-		GFF4120	0.38	-0.4
4,143,778	-		GFF4120	0.42	-0.2
4,143,779	+		GFF4120	0.42	-0.2
4,143,779	+		GFF4120	0.42	+0.5
4,143,779	+		GFF4120	0.42	-1.7
4,143,779	+		GFF4120	0.42	+1.7
4,143,779	+		GFF4120	0.42	-0.7
4,143,779	+		GFF4120	0.42	+0.6
4,143,786	+		GFF4120	0.42	+0.4
4,143,787	-		GFF4120	0.42	-0.1
4,143,787	-		GFF4120	0.42	-0.9
4,143,787	-		GFF4120	0.42	-0.1
4,143,787	-		GFF4120	0.42	-1.9
4,143,788	-		GFF4120	0.42	-1.7
4,143,794	-		GFF4120	0.43	-2.3
4,143,794	-		GFF4120	0.43	-0.2
4,143,794	-		GFF4120	0.43	-1.1
4,143,799	-		GFF4120	0.43	-0.7
4,143,801	+		GFF4120	0.43	-0.5
4,143,806	+		GFF4120	0.44	-0.3
4,143,806	+		GFF4120	0.44	-0.5
4,143,809	-		GFF4120	0.44	-0.7
4,143,809	-		GFF4120	0.44	-2.9
4,143,809	-		GFF4120	0.44	-1.2
4,143,840	+		GFF4120	0.46	+0.9
4,143,840	+		GFF4120	0.46	+0.1
4,143,840	+		GFF4120	0.46	+0.0
4,143,848	-		GFF4120	0.47	-1.3
4,143,891	+		GFF4120	0.50	-0.8
4,143,904	-		GFF4120	0.51	-2.4
4,143,928	-		GFF4120	0.53	+0.2
4,143,928	-		GFF4120	0.53	-0.4
4,143,942	+		GFF4120	0.54	+0.3
4,143,950	-		GFF4120	0.55	+0.6
4,143,950	-		GFF4120	0.55	+0.8
4,143,962	+		GFF4120	0.55	+0.7
4,143,990	-		GFF4120	0.57	+0.3
4,143,990	-		GFF4120	0.57	-1.4
4,144,050	-		GFF4120	0.62	-1.5
4,144,053	+		GFF4120	0.62	+0.6
4,144,053	-		GFF4120	0.62	+0.3
4,144,055	+		GFF4120	0.62	-0.9
4,144,055	+		GFF4120	0.62	-1.7
4,144,055	+		GFF4120	0.62	-0.6
4,144,058	-		GFF4120	0.63	+0.7
4,144,063	+		GFF4120	0.63	+0.2
4,144,063	-		GFF4120	0.63	-0.8
4,144,068	+		GFF4120	0.63	+0.4
4,144,096	+		GFF4120	0.65	+0.3
4,144,098	-		GFF4120	0.66	+0.5
4,144,103	-		GFF4120	0.66	-1.2
4,144,109	-		GFF4120	0.66	+1.3
4,144,122	+		GFF4120	0.67	-1.8
4,144,122	+		GFF4120	0.67	+0.2
4,144,132	+		GFF4120	0.68	+0.6
4,144,132	+		GFF4120	0.68	+0.5
4,144,132	+		GFF4120	0.68	-0.3
4,144,132	+		GFF4120	0.68	-1.1
4,144,132	+		GFF4120	0.68	+0.5
4,144,132	+		GFF4120	0.68	-0.2
4,144,140	-		GFF4120	0.69	+0.8
4,144,140	-		GFF4120	0.69	+0.4
4,144,140	-		GFF4120	0.69	-1.0
4,144,140	-		GFF4120	0.69	+0.3
4,144,151	+		GFF4120	0.70	-0.0
4,144,184	+		GFF4120	0.72	+0.0
4,144,184	+		GFF4120	0.72	-0.7
4,144,184	+		GFF4120	0.72	+0.5
4,144,184	+		GFF4120	0.72	-0.0
4,144,184	+		GFF4120	0.72	+0.7
4,144,184	+		GFF4120	0.72	-0.3
4,144,184	+		GFF4120	0.72	-0.2
4,144,184	+		GFF4120	0.72	+0.4
4,144,184	+		GFF4120	0.72	+0.7
4,144,184	+		GFF4120	0.72	-0.5
4,144,184	+		GFF4120	0.72	-0.6
4,144,185	+		GFF4120	0.72	+0.4
4,144,185	+		GFF4120	0.72	-1.5
4,144,185	+		GFF4120	0.72	-0.0
4,144,192	-		GFF4120	0.73	-2.3
4,144,192	-		GFF4120	0.73	+0.8
4,144,192	-		GFF4120	0.73	-1.7
4,144,192	-		GFF4120	0.73	+0.1
4,144,192	-		GFF4120	0.73	+0.1
4,144,193	-		GFF4120	0.73	-0.4
4,144,249	-		GFF4120	0.77	-1.8
4,144,293	+		GFF4120	0.80	+0.3
4,144,309	-		GFF4120	0.81	-1.3
4,144,312	+		GFF4120	0.82	-0.2
4,144,312	+		GFF4120	0.82	+0.4
4,144,312	+		GFF4120	0.82	-1.5
4,144,320	-		GFF4120	0.82	+0.5
4,144,320	-		GFF4120	0.82	+0.7
4,144,343	-		GFF4120	0.84	-0.4
4,144,343	-		GFF4120	0.84	+0.1
4,144,363	-		GFF4120	0.85	-0.7
4,144,381	+		GFF4120	0.87	-1.0
4,144,381	-		GFF4120	0.87	-0.8
4,144,389	-		GFF4120	0.87	+0.8
4,144,389	-		GFF4120	0.87	-0.4
4,144,390	+		GFF4120	0.87	-1.0
4,144,390	+		GFF4120	0.87	-0.2
4,144,401	-		GFF4120	0.88	-0.0
4,144,456	-				-1.1
4,144,482	-				-0.6
4,144,498	+				-0.5
4,144,554	+				-0.8
4,144,554	+				+0.8
4,144,554	+				+0.2
4,144,554	+				-1.0
4,144,554	+				-0.0
4,144,554	+				-0.2
4,144,555	-				-0.0
4,144,556	+				-0.8
4,144,562	-				-0.6
4,144,562	-				-0.0
4,144,562	-				-1.2
4,144,575	+				-0.5
4,144,578	-				-2.0
4,144,583	-				+0.2
4,144,583	-				-1.3
4,144,589	+				+0.7
4,144,594	+				+0.4
4,144,602	-				-0.5
4,144,602	-				+1.0
4,144,656	-		GFF4121	0.10	-0.7
4,144,763	+		GFF4121	0.22	-0.9
4,144,763	+		GFF4121	0.22	+0.8
4,144,787	-		GFF4121	0.24	+0.7
4,144,788	+		GFF4121	0.25	+0.9
4,144,793	+		GFF4121	0.25	-0.5
4,144,793	+		GFF4121	0.25	-0.5
4,144,793	+		GFF4121	0.25	+0.6
4,144,793	+		GFF4121	0.25	-0.7
4,144,793	+		GFF4121	0.25	+0.1
4,144,795	+		GFF4121	0.25	-1.5
4,144,803	+		GFF4121	0.26	+0.2
4,144,803	-		GFF4121	0.26	-2.1
4,144,810	+		GFF4121	0.27	-0.2
4,144,818	-		GFF4121	0.28	-0.5
4,144,823	+		GFF4121	0.28	-0.8
4,144,823	+		GFF4121	0.28	+0.7
4,144,831	-		GFF4121	0.29	-0.0
4,144,863	-		GFF4121	0.33	-1.3
4,144,863	-		GFF4121	0.33	-0.3
4,144,885	-		GFF4121	0.35	-0.4
4,144,886	-		GFF4121	0.35	-2.0
4,144,886	-		GFF4121	0.35	-1.8
4,144,934	+		GFF4121	0.40	-0.8
4,144,952	+		GFF4121	0.42	-0.0
4,144,987	+		GFF4121	0.46	+0.6
4,144,999	-		GFF4121	0.47	-0.1
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