Strain Fitness in Sphingobium sp. HT1-2 around GFF3968

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,004,288	+		GFF3966	0.45	+0.1
4,004,296	+		GFF3966	0.47	+0.1
4,004,298	-		GFF3966	0.47	-1.3
4,004,298	-		GFF3966	0.47	-0.2
4,004,373	-		GFF3966	0.65	-0.3
4,004,380	+		GFF3966	0.66	-0.8
4,004,398	+		GFF3966	0.70	+0.3
4,004,444	+		GFF3966	0.81	+0.1
4,004,444	+		GFF3966	0.81	+0.1
4,004,452	-		GFF3966	0.83	-0.2
4,004,452	-		GFF3966	0.83	+0.2
4,004,483	-				+0.1
4,004,483	-				-1.7
4,004,485	+				+0.8
4,004,494	-				-1.0
4,004,500	-				-0.3
4,004,500	-				+1.0
4,004,500	-				-0.7
4,004,500	-				-0.6
4,004,505	+				-0.7
4,004,505	+				-2.4
4,004,505	+				+1.2
4,004,505	+				+0.5
4,004,505	+				+0.3
4,004,505	+				+0.0
4,004,505	+				+0.9
4,004,505	+				+1.4
4,004,505	+				-1.3
4,004,505	+				+0.7
4,004,505	+				-0.9
4,004,505	-				-1.8
4,004,511	+				-2.2
4,004,513	-				-0.1
4,004,513	-				+0.1
4,004,513	-				-0.6
4,004,513	-				+0.5
4,004,516	+				-0.4
4,004,524	-				+0.8
4,004,539	+				-0.2
4,004,611	+				-1.9
4,004,700	-				-0.1
4,004,739	-				-0.2
4,004,748	+				-2.2
4,004,812	-				-0.4
4,004,813	-				-0.5
4,004,823	-				-0.3
4,004,832	+				+0.1
4,004,832	+				-1.5
4,004,849	+				+0.4
4,004,849	+				-0.3
4,004,857	-				-0.4
4,004,873	+		GFF3967	0.13	-0.9
4,004,874	+		GFF3967	0.13	-1.1
4,004,884	+		GFF3967	0.15	-2.2
4,004,892	+		GFF3967	0.17	-0.4
4,004,892	-		GFF3967	0.17	+0.1
4,004,899	+		GFF3967	0.18	-0.3
4,004,899	+		GFF3967	0.18	-0.2
4,004,900	-		GFF3967	0.19	-0.2
4,004,900	-		GFF3967	0.19	-0.7
4,004,900	-		GFF3967	0.19	-0.5
4,004,900	-		GFF3967	0.19	+0.4
4,004,900	-		GFF3967	0.19	+1.1
4,004,902	+		GFF3967	0.19	+0.3
4,004,907	+		GFF3967	0.20	-2.6
4,004,912	+		GFF3967	0.21	-1.6
4,004,912	+		GFF3967	0.21	-1.8
4,004,925	-		GFF3967	0.24	-0.5
4,004,944	+		GFF3967	0.28	-0.1
4,004,944	+		GFF3967	0.28	-0.6
4,004,952	-		GFF3967	0.30	+0.0
4,004,952	-		GFF3967	0.30	+0.8
4,004,952	-		GFF3967	0.30	-2.5
4,004,952	-		GFF3967	0.30	-1.2
4,004,960	-		GFF3967	0.32	-1.8
4,004,962	+		GFF3967	0.32	+0.5
4,004,962	+		GFF3967	0.32	+0.1
4,004,962	+		GFF3967	0.32	-1.2
4,004,962	+		GFF3967	0.32	-0.6
4,004,962	+		GFF3967	0.32	+0.5
4,004,962	+		GFF3967	0.32	+0.6
4,004,962	+		GFF3967	0.32	+0.7
4,004,962	+		GFF3967	0.32	-0.4
4,004,967	+		GFF3967	0.33	-2.0
4,004,967	+		GFF3967	0.33	+0.2
4,004,967	+		GFF3967	0.33	+0.2
4,004,967	+		GFF3967	0.33	-1.1
4,004,967	+		GFF3967	0.33	+1.6
4,004,967	+		GFF3967	0.33	+0.5
4,004,967	+		GFF3967	0.33	-0.0
4,004,967	+		GFF3967	0.33	-0.9
4,004,967	+		GFF3967	0.33	-0.0
4,004,967	+		GFF3967	0.33	-0.4
4,004,967	+		GFF3967	0.33	+0.2
4,004,967	+		GFF3967	0.33	-0.4
4,004,967	+		GFF3967	0.33	-1.4
4,004,967	+		GFF3967	0.33	-0.5
4,004,967	+		GFF3967	0.33	-0.4
4,004,967	+		GFF3967	0.33	+1.2
4,004,967	+		GFF3967	0.33	-0.6
4,004,967	+		GFF3967	0.33	-1.1
4,004,967	+		GFF3967	0.33	+0.3
4,004,967	+		GFF3967	0.33	-0.6
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	+0.6
4,004,967	+		GFF3967	0.33	-1.1
4,004,967	+		GFF3967	0.33	-2.0
4,004,967	+		GFF3967	0.33	-1.7
4,004,967	+		GFF3967	0.33	+0.1
4,004,967	+		GFF3967	0.33	-0.2
4,004,967	+		GFF3967	0.33	+1.0
4,004,967	+		GFF3967	0.33	-0.3
4,004,967	+		GFF3967	0.33	+0.1
4,004,967	+		GFF3967	0.33	-0.2
4,004,970	-		GFF3967	0.34	-0.5
4,004,970	-		GFF3967	0.34	-0.4
4,004,970	-		GFF3967	0.34	+0.0
4,004,970	-		GFF3967	0.34	-1.2
4,004,970	-		GFF3967	0.34	+0.9
4,004,972	+		GFF3967	0.34	+0.8
4,004,972	+		GFF3967	0.34	-0.4
4,004,975	-		GFF3967	0.35	+0.0
4,004,975	-		GFF3967	0.35	+0.1
4,004,975	-		GFF3967	0.35	-1.7
4,004,975	-		GFF3967	0.35	-1.4
4,004,975	-		GFF3967	0.35	-0.0
4,004,975	-		GFF3967	0.35	+0.6
4,004,975	-		GFF3967	0.35	+1.0
4,004,975	-		GFF3967	0.35	-0.9
4,004,975	-		GFF3967	0.35	-0.6
4,004,975	-		GFF3967	0.35	+0.1
4,004,975	-		GFF3967	0.35	-1.8
4,004,975	-		GFF3967	0.35	-0.9
4,004,975	-		GFF3967	0.35	-1.7
4,004,975	-		GFF3967	0.35	+0.0
4,004,975	-		GFF3967	0.35	-0.3
4,004,975	-		GFF3967	0.35	+0.9
4,004,975	-		GFF3967	0.35	-1.1
4,004,975	-		GFF3967	0.35	-1.2
4,004,975	-		GFF3967	0.35	-3.0
4,004,975	-		GFF3967	0.35	-0.4
4,004,975	-		GFF3967	0.35	+1.0
4,004,975	-		GFF3967	0.35	-1.1
4,004,975	-		GFF3967	0.35	+0.9
4,004,975	-		GFF3967	0.35	+0.1
4,004,975	-		GFF3967	0.35	-2.2
4,004,975	-		GFF3967	0.35	+1.0
4,004,975	-		GFF3967	0.35	-0.2
4,004,975	-		GFF3967	0.35	-0.8
4,004,975	-		GFF3967	0.35	-1.8
4,004,975	-		GFF3967	0.35	-0.4
4,004,975	-		GFF3967	0.35	-0.3
4,004,975	-		GFF3967	0.35	+0.0
4,004,975	-		GFF3967	0.35	-3.3
4,004,975	-		GFF3967	0.35	-0.3
4,004,977	+		GFF3967	0.36	-1.9
4,004,980	-		GFF3967	0.36	-1.1
4,004,980	-		GFF3967	0.36	+0.3
4,004,993	-		GFF3967	0.39	-1.7
4,005,004	+		GFF3967	0.41	+0.4
4,005,020	-		GFF3967	0.45	-0.0
4,005,026	+		GFF3967	0.46	-1.2
4,005,036	+		GFF3967	0.48	-0.5
4,005,044	-		GFF3967	0.50	+0.4
4,005,052	+		GFF3967	0.52	+0.2
4,005,063	+		GFF3967	0.54	+0.6
4,005,066	-		GFF3967	0.55	+0.2
4,005,075	+		GFF3967	0.57	+1.0
4,005,075	+		GFF3967	0.57	-0.9
4,005,083	-		GFF3967	0.59	-0.3
4,005,092	+		GFF3967	0.61	-0.9
4,005,092	+		GFF3967	0.61	-2.0
4,005,092	+		GFF3967	0.61	-1.8
4,005,092	+		GFF3967	0.61	+0.7
4,005,092	+		GFF3967	0.61	-1.2
4,005,092	+		GFF3967	0.61	-1.3
4,005,092	+		GFF3967	0.61	+0.5
4,005,092	+		GFF3967	0.61	-0.1
4,005,092	-		GFF3967	0.61	-0.2
4,005,100	-		GFF3967	0.62	+1.1
4,005,100	-		GFF3967	0.62	+1.1
4,005,100	-		GFF3967	0.62	+0.1
4,005,100	-		GFF3967	0.62	-0.0
4,005,100	-		GFF3967	0.62	-0.9
4,005,100	-		GFF3967	0.62	-1.6
4,005,100	-		GFF3967	0.62	-0.4
4,005,100	-		GFF3967	0.62	-0.6
4,005,100	-		GFF3967	0.62	+0.6
4,005,100	-		GFF3967	0.62	+1.0
4,005,100	-		GFF3967	0.62	-0.3
4,005,100	-		GFF3967	0.62	-2.3
4,005,100	-		GFF3967	0.62	+0.3
4,005,110	+		GFF3967	0.65	-2.0
4,005,110	+		GFF3967	0.65	+0.2
4,005,118	-		GFF3967	0.66	-0.1
4,005,118	-		GFF3967	0.66	+0.9
4,005,124	+		GFF3967	0.68	-1.4
4,005,124	+		GFF3967	0.68	-1.1
4,005,124	+		GFF3967	0.68	-1.4
4,005,124	+		GFF3967	0.68	-1.4
4,005,124	+		GFF3967	0.68	-1.2
4,005,132	-		GFF3967	0.70	-0.2
4,005,132	-		GFF3967	0.70	+0.2
4,005,132	-		GFF3967	0.70	+1.0
4,005,132	-		GFF3967	0.70	-0.2
4,005,132	-		GFF3967	0.70	-2.1
4,005,132	-		GFF3967	0.70	-1.3
4,005,132	-		GFF3967	0.70	+0.2
4,005,132	-		GFF3967	0.70	+0.3
4,005,142	+		GFF3967	0.72	+0.5
4,005,142	+		GFF3967	0.72	+0.2
4,005,142	-		GFF3967	0.72	-0.8
4,005,149	+		GFF3967	0.73	+0.9
4,005,149	+		GFF3967	0.73	-0.3
4,005,149	+		GFF3967	0.73	+1.0
4,005,149	+		GFF3967	0.73	+1.4
4,005,149	+		GFF3967	0.73	+0.6
4,005,149	+		GFF3967	0.73	-0.1
4,005,149	+		GFF3967	0.73	+0.7
4,005,149	+		GFF3967	0.73	-1.3
4,005,149	+		GFF3967	0.73	-0.0
4,005,149	+		GFF3967	0.73	+0.0
4,005,149	+		GFF3967	0.73	-1.3
4,005,149	+		GFF3967	0.73	+1.3
4,005,149	+		GFF3967	0.73	-0.7
4,005,150	-		GFF3967	0.73	+0.6
4,005,150	-		GFF3967	0.73	-1.8
4,005,150	-		GFF3967	0.73	-0.7
4,005,157	+		GFF3967	0.75	+1.7
4,005,157	-		GFF3967	0.75	-1.0
4,005,157	-		GFF3967	0.75	-0.2
4,005,157	-		GFF3967	0.75	+0.4
4,005,157	-		GFF3967	0.75	-2.7
4,005,157	-		GFF3967	0.75	+0.5
4,005,157	-		GFF3967	0.75	-0.5
4,005,157	-		GFF3967	0.75	+0.3
4,005,157	-		GFF3967	0.75	+0.7
4,005,157	-		GFF3967	0.75	+1.2
4,005,157	-		GFF3967	0.75	+0.1
4,005,159	+		GFF3967	0.75	+0.1
4,005,159	+		GFF3967	0.75	+0.0
4,005,167	-		GFF3967	0.77	+0.0
4,005,185	+		GFF3967	0.81	+0.0
4,005,193	-		GFF3967	0.83	-0.3
4,005,193	-		GFF3967	0.83	-1.2
4,005,196	+		GFF3967	0.84	-1.3
4,005,196	+		GFF3967	0.84	-2.3
4,005,204	-		GFF3967	0.85	-1.8
4,005,204	-		GFF3967	0.85	-2.7
4,005,213	-		GFF3967	0.87	-1.9
4,005,220	+		GFF3967	0.89	-1.4
4,005,220	+		GFF3967	0.89	-1.7
4,005,228	-				+0.2
4,005,233	+				+0.2
4,005,246	-				-0.2
4,005,264	+				+1.0
4,005,264	+				-0.3
4,005,264	+				-2.0
4,005,264	+				+1.6
4,005,264	+				+0.4
4,005,265	-				-0.5
4,005,271	+				-0.4
4,005,271	+				+0.7
4,005,271	+				-1.2
4,005,271	+				-1.4
4,005,271	+				-0.5
4,005,271	+				-0.9
4,005,272	-				-1.7
4,005,272	-				-2.1
4,005,279	-				+0.9
4,005,279	-				+0.1
4,005,279	-				+0.3
4,005,298	-				-1.4
4,005,317	+				+1.0
4,005,317	+				+0.6
4,005,322	+		GFF3968	0.11	+1.1
4,005,325	-		GFF3968	0.11	-1.2
4,005,325	-		GFF3968	0.11	+0.2
4,005,357	-		GFF3968	0.19	+0.0
4,005,375	+		GFF3968	0.23	-0.2
4,005,380	+		GFF3968	0.24	+0.4
4,005,381	+		GFF3968	0.24	-0.8
4,005,381	+		GFF3968	0.24	-2.2
4,005,388	-		GFF3968	0.26	-0.8
4,005,390	+		GFF3968	0.26	-0.3
4,005,393	+		GFF3968	0.27	-1.0
4,005,395	+		GFF3968	0.27	-1.4
4,005,395	+		GFF3968	0.27	-0.9
4,005,403	-		GFF3968	0.29	-0.3
4,005,403	-		GFF3968	0.29	+0.7
4,005,403	-		GFF3968	0.29	-1.0
4,005,403	-		GFF3968	0.29	-0.7
4,005,403	-		GFF3968	0.29	+0.9
4,005,410	+		GFF3968	0.30	+0.3
4,005,410	+		GFF3968	0.30	-2.3
4,005,410	+		GFF3968	0.30	-0.4
4,005,410	+		GFF3968	0.30	+0.0
4,005,410	+		GFF3968	0.30	-0.9
4,005,410	+		GFF3968	0.30	-0.4
4,005,410	+		GFF3968	0.30	-0.6
4,005,410	+		GFF3968	0.30	-0.9
4,005,410	+		GFF3968	0.30	+0.6
4,005,418	-		GFF3968	0.32	-1.6
4,005,418	-		GFF3968	0.32	+0.6
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	+1.1
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	-0.6
4,005,418	-		GFF3968	0.32	-0.2
4,005,418	-		GFF3968	0.32	-2.9
4,005,418	-		GFF3968	0.32	-0.3
4,005,418	-		GFF3968	0.32	+0.0
4,005,418	-		GFF3968	0.32	-0.8
4,005,418	-		GFF3968	0.32	+0.6
4,005,418	-		GFF3968	0.32	+0.6
4,005,418	-		GFF3968	0.32	+0.4
4,005,418	-		GFF3968	0.32	+1.0
4,005,420	+		GFF3968	0.33	-0.4
4,005,420	+		GFF3968	0.33	+1.1
4,005,420	+		GFF3968	0.33	+0.9
4,005,420	+		GFF3968	0.33	-2.4
4,005,423	-		GFF3968	0.33	+0.2
4,005,428	-		GFF3968	0.34	-1.4
4,005,428	-		GFF3968	0.34	-1.6
4,005,428	-		GFF3968	0.34	+0.2
4,005,437	+		GFF3968	0.36	-0.2
4,005,437	+		GFF3968	0.36	-0.1
4,005,445	-		GFF3968	0.38	-0.2
4,005,465	+		GFF3968	0.43	-1.0
4,005,473	-		GFF3968	0.45	-0.8
4,005,473	-		GFF3968	0.45	-0.2
4,005,475	+		GFF3968	0.45	-0.9
4,005,475	+		GFF3968	0.45	-1.2
4,005,478	-		GFF3968	0.46	-0.2
4,005,483	-		GFF3968	0.47	-2.2
4,005,483	-		GFF3968	0.47	+1.1
4,005,483	-		GFF3968	0.47	-1.1
4,005,483	-		GFF3968	0.47	+0.0
4,005,496	-		GFF3968	0.50	-1.0
4,005,496	-		GFF3968	0.50	+0.0
4,005,496	-		GFF3968	0.50	-0.7
4,005,503	+		GFF3968	0.51	-0.3
4,005,503	-		GFF3968	0.51	-2.5
4,005,534	+		GFF3968	0.58	+1.1
4,005,561	-		GFF3968	0.64	+0.1
4,005,571	-		GFF3968	0.66	-0.4
4,005,601	+		GFF3968	0.73	+0.4
4,005,607	-		GFF3968	0.74	+0.2
4,005,618	+		GFF3968	0.77	-1.6
4,005,640	+		GFF3968	0.82	-1.2
4,005,640	-		GFF3968	0.82	+0.1
4,005,640	-		GFF3968	0.82	+1.1
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