Strain Fitness in Sphingobium sp. HT1-2 around GFF3965

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,002,657	+		GFF3963	0.86	+0.1
4,002,703	-				+0.2
4,002,723	-				+0.4
4,002,739	+				+0.6
4,002,742	-				+1.1
4,002,757	-				-0.2
4,002,796	+		GFF3964	0.16	+0.6
4,002,796	+		GFF3964	0.16	-0.8
4,002,796	+		GFF3964	0.16	+1.0
4,002,796	+		GFF3964	0.16	-1.3
4,002,796	+		GFF3964	0.16	+0.3
4,002,796	+		GFF3964	0.16	+0.1
4,002,796	+		GFF3964	0.16	-1.1
4,002,796	+		GFF3964	0.16	+0.1
4,002,798	+		GFF3964	0.16	-0.7
4,002,798	+		GFF3964	0.16	-0.0
4,002,804	-		GFF3964	0.17	+0.5
4,002,806	-		GFF3964	0.17	+0.3
4,002,806	-		GFF3964	0.17	+2.0
4,002,820	+		GFF3964	0.20	-1.7
4,002,827	+		GFF3964	0.21	-1.3
4,002,849	+		GFF3964	0.24	-1.8
4,002,873	-		GFF3964	0.28	-0.8
4,002,913	-		GFF3964	0.35	-0.9
4,002,913	-		GFF3964	0.35	-1.2
4,002,913	-		GFF3964	0.35	-1.0
4,002,977	-		GFF3964	0.45	+1.0
4,002,979	+		GFF3964	0.46	-1.0
4,002,979	+		GFF3964	0.46	+3.0
4,002,987	-		GFF3964	0.47	+1.2
4,002,993	-		GFF3964	0.48	+1.0
4,002,995	-		GFF3964	0.48	-0.7
4,002,995	-		GFF3964	0.48	+0.6
4,003,046	+		GFF3964	0.56	-0.9
4,003,055	-		GFF3964	0.58	-0.2
4,003,088	-		GFF3964	0.63	+0.5
4,003,088	-		GFF3964	0.63	-0.5
4,003,088	-		GFF3964	0.63	-0.9
4,003,112	-		GFF3964	0.67	+0.0
4,003,143	+		GFF3964	0.72	-0.4
4,003,158	+		GFF3964	0.75	-0.2
4,003,158	+		GFF3964	0.75	-0.4
4,003,166	-		GFF3964	0.76	-0.1
4,003,261	+				+0.7
4,003,262	+				-0.3
4,003,281	+				+0.0
4,003,307	+				-0.8
4,003,307	+				+0.6
4,003,323	+				-1.4
4,003,323	+				+1.1
4,003,331	-				-0.3
4,003,331	-				-0.4
4,003,336	-				-1.2
4,003,388	-				-1.2
4,003,409	+				+0.3
4,003,409	+				-1.1
4,003,414	+				-1.6
4,003,414	+				-0.2
4,003,417	-				-0.2
4,003,417	-				-1.0
4,003,435	+				+1.6
4,003,439	+				-1.4
4,003,447	-				+0.2
4,003,469	+				-0.4
4,003,502	-				-0.5
4,003,506	+				+0.2
4,003,511	+				+0.3
4,003,514	-				+0.4
4,003,520	-				+1.1
4,003,534	+				+0.9
4,003,552	-				+0.2
4,003,590	-				+1.5
4,003,590	-				-0.4
4,003,635	+				+1.0
4,003,635	+				+0.7
4,003,635	+				-0.7
4,003,643	-				+1.5
4,003,644	-				-1.0
4,003,644	-				-0.2
4,003,683	+				-0.2
4,003,690	-		GFF3965	0.11	+0.4
4,003,698	-		GFF3965	0.13	-0.5
4,003,703	+		GFF3965	0.14	+1.4
4,003,706	+		GFF3965	0.14	+0.4
4,003,716	+		GFF3965	0.17	-1.5
4,003,716	+		GFF3965	0.17	-0.7
4,003,724	-		GFF3965	0.18	-0.3
4,003,724	-		GFF3965	0.18	+1.6
4,003,724	-		GFF3965	0.18	+1.3
4,003,724	-		GFF3965	0.18	-1.7
4,003,724	-		GFF3965	0.18	+0.4
4,003,804	-		GFF3965	0.36	-0.3
4,003,891	+		GFF3965	0.55	+1.5
4,003,906	+		GFF3965	0.58	-0.6
4,003,906	+		GFF3965	0.58	+0.8
4,003,909	-		GFF3965	0.59	+0.5
4,003,975	-		GFF3965	0.73	-1.5
4,003,993	+		GFF3965	0.77	+0.6
4,003,993	+		GFF3965	0.77	-1.8
4,004,014	+		GFF3965	0.82	-0.1
4,004,027	+		GFF3965	0.85	+0.7
4,004,028	+		GFF3965	0.85	+0.3
4,004,038	+		GFF3965	0.87	+0.3
4,004,038	+		GFF3965	0.87	-1.0
4,004,038	+		GFF3965	0.87	+0.6
4,004,038	+		GFF3965	0.87	-0.5
4,004,038	+		GFF3965	0.87	-0.3
4,004,038	+		GFF3965	0.87	+0.3
4,004,038	+		GFF3965	0.87	+0.8
4,004,046	-		GFF3965	0.89	+1.9
4,004,046	-		GFF3965	0.89	+1.2
4,004,046	-		GFF3965	0.89	-0.5
4,004,046	-		GFF3965	0.89	-0.4
4,004,046	-		GFF3965	0.89	-0.2
4,004,046	-		GFF3965	0.89	-0.2
4,004,125	-				+0.2
4,004,128	+				-0.7
4,004,162	+		GFF3966	0.16	-0.0
4,004,162	+		GFF3966	0.16	+0.6
4,004,179	-		GFF3966	0.20	+0.1
4,004,222	+		GFF3966	0.30	-2.1
4,004,222	+		GFF3966	0.30	-0.3
4,004,228	+		GFF3966	0.31	-0.7
4,004,230	-		GFF3966	0.32	-0.4
4,004,238	+		GFF3966	0.34	-0.8
4,004,243	+		GFF3966	0.35	-0.5
4,004,243	+		GFF3966	0.35	+0.7
4,004,243	+		GFF3966	0.35	+0.4
4,004,251	-		GFF3966	0.37	-1.0
4,004,251	-		GFF3966	0.37	+0.1
4,004,290	+		GFF3966	0.46	+0.1
4,004,296	+		GFF3966	0.47	+0.2
4,004,298	-		GFF3966	0.47	-0.0
4,004,336	+		GFF3966	0.56	-0.4
4,004,380	+		GFF3966	0.66	-0.7
4,004,398	+		GFF3966	0.70	+0.4
4,004,452	-		GFF3966	0.83	+0.3
4,004,483	-				+0.3
4,004,494	-				-0.9
4,004,500	-				+1.1
4,004,500	-				-0.6
4,004,500	-				-0.4
4,004,505	+				-0.5
4,004,505	+				+1.4
4,004,505	+				+0.7
4,004,505	+				+0.5
4,004,505	+				+0.2
4,004,505	+				+1.0
4,004,505	+				+1.3
4,004,505	+				-1.1
4,004,505	+				-0.8
4,004,513	-				+0.3
4,004,513	-				+0.7
4,004,516	+				-0.2
4,004,524	-				+0.9
4,004,611	+				-1.8
4,004,700	-				+0.1
4,004,823	-				-0.1
4,004,832	+				-1.4
4,004,849	+				+0.6
4,004,873	+		GFF3967	0.13	-0.8
4,004,874	+		GFF3967	0.13	-0.9
4,004,884	+		GFF3967	0.15	-2.0
4,004,892	+		GFF3967	0.17	-0.2
4,004,899	+		GFF3967	0.18	-0.0
4,004,900	-		GFF3967	0.19	-0.1
4,004,900	-		GFF3967	0.19	+0.5
4,004,900	-		GFF3967	0.19	+1.2
4,004,907	+		GFF3967	0.20	-2.4
4,004,912	+		GFF3967	0.21	-1.7
4,004,944	+		GFF3967	0.28	+1.4
4,004,944	+		GFF3967	0.28	-0.5
4,004,952	-		GFF3967	0.30	+0.2
4,004,952	-		GFF3967	0.30	+0.9
4,004,952	-		GFF3967	0.30	-2.4
4,004,960	-		GFF3967	0.32	-1.7
4,004,962	+		GFF3967	0.32	+0.6
4,004,962	+		GFF3967	0.32	+0.2
4,004,962	+		GFF3967	0.32	-1.0
4,004,962	+		GFF3967	0.32	+0.7
4,004,967	+		GFF3967	0.33	+0.3
4,004,967	+		GFF3967	0.33	-1.0
4,004,967	+		GFF3967	0.33	+1.7
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	+0.1
4,004,967	+		GFF3967	0.33	-0.8
4,004,967	+		GFF3967	0.33	+0.1
4,004,967	+		GFF3967	0.33	-0.3
4,004,967	+		GFF3967	0.33	+0.3
4,004,967	+		GFF3967	0.33	-0.2
4,004,967	+		GFF3967	0.33	-1.0
4,004,967	+		GFF3967	0.33	-0.3
4,004,967	+		GFF3967	0.33	+1.3
4,004,967	+		GFF3967	0.33	-0.2
4,004,967	+		GFF3967	0.33	-0.9
4,004,967	+		GFF3967	0.33	-0.4
4,004,967	+		GFF3967	0.33	+0.9
4,004,967	+		GFF3967	0.33	+0.9
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	-0.9
4,004,967	+		GFF3967	0.33	+0.7
4,004,967	+		GFF3967	0.33	+0.2
4,004,967	+		GFF3967	0.33	-0.1
4,004,967	+		GFF3967	0.33	+0.9
4,004,967	+		GFF3967	0.33	+2.3
4,004,967	+		GFF3967	0.33	-0.0
4,004,970	-		GFF3967	0.34	-0.3
4,004,970	-		GFF3967	0.34	-1.1
4,004,970	-		GFF3967	0.34	+1.0
4,004,970	-		GFF3967	0.34	+2.5
4,004,975	-		GFF3967	0.35	+0.2
4,004,975	-		GFF3967	0.35	+0.2
4,004,975	-		GFF3967	0.35	-1.6
4,004,975	-		GFF3967	0.35	-1.2
4,004,975	-		GFF3967	0.35	+0.1
4,004,975	-		GFF3967	0.35	+0.7
4,004,975	-		GFF3967	0.35	-0.7
4,004,975	-		GFF3967	0.35	-0.5
4,004,975	-		GFF3967	0.35	+0.3
4,004,975	-		GFF3967	0.35	-1.7
4,004,975	-		GFF3967	0.35	-0.8
4,004,975	-		GFF3967	0.35	+0.2
4,004,975	-		GFF3967	0.35	-1.2
4,004,975	-		GFF3967	0.35	+1.0
4,004,975	-		GFF3967	0.35	-1.0
4,004,975	-		GFF3967	0.35	-0.3
4,004,975	-		GFF3967	0.35	-0.9
4,004,975	-		GFF3967	0.35	+1.1
4,004,975	-		GFF3967	0.35	-2.0
4,004,975	-		GFF3967	0.35	-0.7
4,004,975	-		GFF3967	0.35	-1.7
4,004,975	-		GFF3967	0.35	-0.3
4,004,975	-		GFF3967	0.35	-1.0
4,004,975	-		GFF3967	0.35	-3.2
4,004,975	-		GFF3967	0.35	+1.2
4,004,975	-		GFF3967	0.35	-0.2
4,004,993	-		GFF3967	0.39	-1.5
4,005,004	+		GFF3967	0.41	+0.6
4,005,020	-		GFF3967	0.45	+0.1
4,005,034	+		GFF3967	0.48	+1.2
4,005,063	+		GFF3967	0.54	+0.7
4,005,066	-		GFF3967	0.55	+0.3
4,005,075	+		GFF3967	0.57	+1.1
4,005,075	+		GFF3967	0.57	-0.7
4,005,092	+		GFF3967	0.61	+0.8
4,005,092	+		GFF3967	0.61	+0.1
4,005,092	-		GFF3967	0.61	-0.1