Strain Fitness in Sphingobium sp. HT1-2 around GFF3963

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,001,398	-		GFF3961	0.23	+0.1
4,001,420	-		GFF3961	0.29	+0.2
4,001,441	+		GFF3961	0.35	-0.7
4,001,480	+		GFF3961	0.47	-1.8
4,001,482	+		GFF3961	0.47	+0.1
4,001,482	+		GFF3961	0.47	+0.9
4,001,483	-		GFF3961	0.48	+0.0
4,001,500	+		GFF3961	0.52	-0.5
4,001,500	+		GFF3961	0.52	-1.4
4,001,500	+		GFF3961	0.52	+0.9
4,001,510	+		GFF3961	0.55	+1.8
4,001,510	+		GFF3961	0.55	-0.8
4,001,517	+		GFF3961	0.57	-1.0
4,001,529	+		GFF3961	0.61	+0.7
4,001,556	+		GFF3961	0.69	-0.6
4,001,562	+		GFF3961	0.70	+0.1
4,001,562	+		GFF3961	0.70	+0.4
4,001,570	-		GFF3961	0.73	+0.6
4,001,620	+		GFF3961	0.87	+0.8
4,001,648	-				-0.9
4,001,660	-				-0.5
4,001,666	-				-0.8
4,001,689	+				-1.7
4,001,709	+				+1.2
4,001,709	+				-1.7
4,001,709	+				+0.3
4,001,742	-		GFF3962	0.13	-2.1
4,001,783	+		GFF3962	0.23	-1.3
4,001,783	+		GFF3962	0.23	-0.8
4,001,791	-		GFF3962	0.25	+0.6
4,001,791	-		GFF3962	0.25	+0.2
4,001,791	-		GFF3962	0.25	+1.1
4,001,791	-		GFF3962	0.25	-1.3
4,001,793	+		GFF3962	0.26	-0.2
4,001,803	-		GFF3962	0.28	+0.0
4,001,810	-		GFF3962	0.30	-0.1
4,001,823	+		GFF3962	0.33	+0.5
4,001,831	-		GFF3962	0.35	+0.1
4,001,838	+		GFF3962	0.37	+0.1
4,001,844	+		GFF3962	0.38	-0.9
4,001,845	+		GFF3962	0.39	+0.3
4,001,846	-		GFF3962	0.39	+0.4
4,001,853	-		GFF3962	0.40	+1.2
4,001,853	-		GFF3962	0.40	+0.5
4,001,853	-		GFF3962	0.40	-0.2
4,001,869	+		GFF3962	0.44	-1.3
4,001,896	+		GFF3962	0.51	+1.4
4,001,896	+		GFF3962	0.51	-0.2
4,001,909	-		GFF3962	0.54	+0.6
4,001,939	+		GFF3962	0.62	+0.3
4,001,960	-		GFF3962	0.67	-0.1
4,001,966	+		GFF3962	0.68	+0.1
4,001,969	-		GFF3962	0.69	-0.3
4,001,972	+		GFF3962	0.70	-0.3
4,001,995	-		GFF3962	0.76	-1.1
4,002,034	-		GFF3962	0.85	-0.9
4,002,039	-		GFF3962	0.86	-1.6
4,002,039	-		GFF3962	0.86	-0.3
4,002,039	-		GFF3962	0.86	+0.3
4,002,041	+		GFF3962	0.87	+0.0
4,002,043	+		GFF3962	0.87	-0.2
4,002,049	+		GFF3962	0.89	+0.2
4,002,051	-		GFF3962	0.89	-0.7
4,002,051	-		GFF3962	0.89	+1.4
4,002,051	-		GFF3962	0.89	+1.9
4,002,061	-				+0.6
4,002,063	+				-0.8
4,002,070	+				-0.3
4,002,075	+				+1.1
4,002,083	-				+0.2
4,002,083	-				+0.3
4,002,108	+				-0.5
4,002,108	+				-0.9
4,002,108	+				-0.7
4,002,108	+				+0.5
4,002,116	-				-0.3
4,002,116	-				-0.2
4,002,116	-				-1.4
4,002,116	-				+0.6
4,002,125	+				+0.3
4,002,132	+				+0.1
4,002,132	-				-1.8
4,002,133	-				+0.6
4,002,171	-				+0.5
4,002,181	+				+0.5
4,002,186	+				-0.1
4,002,195	+				+0.2
4,002,202	+				+1.2
4,002,241	+				+0.7
4,002,243	-				+1.0
4,002,248	-				-1.0
4,002,264	+				+0.0
4,002,272	-				+0.3
4,002,272	-				+1.0
4,002,308	-				+0.2
4,002,308	-				+1.4
4,002,318	+				+0.2
4,002,318	+				-0.1
4,002,323	+				-0.2
4,002,323	+				+0.2
4,002,323	+				-1.0
4,002,323	+				+0.5
4,002,323	+				+0.5
4,002,323	+				+0.4
4,002,326	-				-0.0
4,002,326	-				-0.2
4,002,326	-				+0.2
4,002,331	-				-0.8
4,002,331	-				+0.2
4,002,331	-				-0.6
4,002,331	-				-0.2
4,002,331	-				+0.6
4,002,331	-				-0.4
4,002,331	-				-1.3
4,002,331	-				-0.2
4,002,348	+				+0.5
4,002,349	+				+0.3
4,002,350	-				-2.0
4,002,350	-				-0.2
4,002,356	-				+0.8
4,002,356	-				+0.3
4,002,359	+				+1.4
4,002,392	+		GFF3963	0.11	-0.7
4,002,400	-		GFF3963	0.13	+0.6
4,002,506	+		GFF3963	0.43	+0.7
4,002,586	-		GFF3963	0.66	-0.3
4,002,619	+		GFF3963	0.75	-0.0
4,002,627	-		GFF3963	0.77	+0.9
4,002,627	-		GFF3963	0.77	-0.8
4,002,627	-		GFF3963	0.77	-0.1
4,002,657	+		GFF3963	0.86	+0.1
4,002,703	-				+0.2
4,002,723	-				+0.4
4,002,739	+				+0.6
4,002,742	-				+1.1
4,002,757	-				-0.2
4,002,796	+		GFF3964	0.16	+0.6
4,002,796	+		GFF3964	0.16	-0.8
4,002,796	+		GFF3964	0.16	+1.0
4,002,796	+		GFF3964	0.16	-1.3
4,002,796	+		GFF3964	0.16	+0.3
4,002,796	+		GFF3964	0.16	+0.1
4,002,796	+		GFF3964	0.16	-1.1
4,002,796	+		GFF3964	0.16	+0.1
4,002,798	+		GFF3964	0.16	-0.7
4,002,798	+		GFF3964	0.16	-0.0
4,002,804	-		GFF3964	0.17	+0.5
4,002,806	-		GFF3964	0.17	+0.3
4,002,806	-		GFF3964	0.17	+2.0
4,002,820	+		GFF3964	0.20	-1.7
4,002,827	+		GFF3964	0.21	-1.3
4,002,849	+		GFF3964	0.24	-1.8
4,002,873	-		GFF3964	0.28	-0.8
4,002,913	-		GFF3964	0.35	-0.9
4,002,913	-		GFF3964	0.35	-1.2
4,002,913	-		GFF3964	0.35	-1.0
4,002,977	-		GFF3964	0.45	+1.0
4,002,979	+		GFF3964	0.46	-1.0
4,002,979	+		GFF3964	0.46	+3.0
4,002,987	-		GFF3964	0.47	+1.2
4,002,993	-		GFF3964	0.48	+1.0
4,002,995	-		GFF3964	0.48	-0.7
4,002,995	-		GFF3964	0.48	+0.6
4,003,046	+		GFF3964	0.56	-0.9
4,003,055	-		GFF3964	0.58	-0.2
4,003,088	-		GFF3964	0.63	+0.5
4,003,088	-		GFF3964	0.63	-0.5
4,003,088	-		GFF3964	0.63	-0.9
4,003,112	-		GFF3964	0.67	+0.0
4,003,143	+		GFF3964	0.72	-0.4
4,003,158	+		GFF3964	0.75	-0.2
4,003,158	+		GFF3964	0.75	-0.4
4,003,166	-		GFF3964	0.76	-0.1
4,003,261	+				+0.7
4,003,262	+				-0.3
4,003,281	+				+0.0
4,003,307	+				-0.8
4,003,307	+				+0.6
4,003,323	+				-1.4
4,003,323	+				+1.1
4,003,331	-				-0.3
4,003,331	-				-0.4
4,003,336	-				-1.2
4,003,388	-				-1.2
4,003,409	+				+0.3
4,003,409	+				-1.1
4,003,414	+				-1.6
4,003,414	+				-0.2
4,003,417	-				-0.2
4,003,417	-				-1.0
4,003,435	+				+1.6
4,003,439	+				-1.4
4,003,447	-				+0.2
4,003,469	+				-0.4
4,003,502	-				-0.5
4,003,506	+				+0.2
4,003,511	+				+0.3
4,003,514	-				+0.4
4,003,520	-				+1.1
4,003,534	+				+0.9
4,003,552	-				+0.2
4,003,590	-				+1.5
4,003,590	-				-0.4
4,003,635	+				+1.0
4,003,635	+				+0.7
4,003,635	+				-0.7
4,003,643	-				+1.5
4,003,644	-				-1.0
4,003,644	-				-0.2
4,003,683	+				-0.2
4,003,690	-		GFF3965	0.11	+0.4
4,003,698	-		GFF3965	0.13	-0.5
4,003,703	+		GFF3965	0.14	+1.4
4,003,706	+		GFF3965	0.14	+0.4