Strain Fitness in Sphingobium sp. HT1-2 around GFF3929

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,966,768	+		GFF3927	0.18	-1.6
3,966,853	-		GFF3927	0.53	+2.1
3,966,899	+		GFF3927	0.72	-1.4
3,966,902	-		GFF3927	0.73	-1.4
3,966,904	+		GFF3927	0.74	-0.6
3,966,904	+		GFF3927	0.74	-1.6
3,966,904	+		GFF3927	0.74	+0.6
3,966,907	-		GFF3927	0.75	-0.6
3,966,911	+		GFF3927	0.76	-2.5
3,966,912	-		GFF3927	0.77	-0.3
3,966,912	-		GFF3927	0.77	+0.6
3,966,912	-		GFF3927	0.77	+0.1
3,966,912	-		GFF3927	0.77	-0.9
3,966,924	+		GFF3927	0.82	+0.4
3,966,926	+		GFF3927	0.83	-2.4
3,966,961	+				-2.9
3,966,961	+				+0.1
3,966,969	-				-0.8
3,967,005	+				+0.2
3,967,006	-				+0.6
3,967,006	-				+0.6
3,967,013	-				+0.7
3,967,013	-				-0.4
3,967,062	+				-0.8
3,967,068	+				-0.1
3,967,068	+				+0.1
3,967,068	+				+1.0
3,967,068	+				+0.4
3,967,076	-				-0.1
3,967,076	-				+0.1
3,967,082	+				-1.6
3,967,083	-				-1.4
3,967,085	-				-0.9
3,967,093	-				-0.6
3,967,111	+				+0.6
3,967,111	+				+1.0
3,967,121	+				+0.4
3,967,134	+		GFF3928	0.11	-0.1
3,967,158	+		GFF3928	0.16	-0.2
3,967,158	+		GFF3928	0.16	-0.3
3,967,173	+		GFF3928	0.20	-0.6
3,967,181	-		GFF3928	0.21	-0.5
3,967,185	-		GFF3928	0.22	-0.1
3,967,192	+		GFF3928	0.24	-0.6
3,967,200	-		GFF3928	0.25	-0.5
3,967,214	+		GFF3928	0.29	-0.2
3,967,214	+		GFF3928	0.29	+0.9
3,967,218	+		GFF3928	0.29	+0.2
3,967,218	+		GFF3928	0.29	+0.2
3,967,219	+		GFF3928	0.30	+0.1
3,967,221	-		GFF3928	0.30	-0.2
3,967,226	-		GFF3928	0.31	+1.2
3,967,227	-		GFF3928	0.31	-0.8
3,967,227	-		GFF3928	0.31	-0.8
3,967,227	-		GFF3928	0.31	+0.0
3,967,254	-		GFF3928	0.37	-1.6
3,967,258	+		GFF3928	0.38	-1.0
3,967,261	-		GFF3928	0.39	-0.5
3,967,274	+		GFF3928	0.42	+1.0
3,967,274	+		GFF3928	0.42	+0.6
3,967,290	+		GFF3928	0.45	-0.6
3,967,298	-		GFF3928	0.47	-2.8
3,967,298	-		GFF3928	0.47	+0.6
3,967,361	+		GFF3928	0.61	-0.2
3,967,370	+		GFF3928	0.63	-0.1
3,967,370	+		GFF3928	0.63	-3.1
3,967,370	+		GFF3928	0.63	-0.2
3,967,378	-		GFF3928	0.64	-1.9
3,967,378	-		GFF3928	0.64	+0.8
3,967,378	-		GFF3928	0.64	-1.1
3,967,405	-		GFF3928	0.70	-0.6
3,967,444	+		GFF3928	0.79	-1.2
3,967,449	+		GFF3928	0.80	-1.2
3,967,478	+		GFF3928	0.86	+0.1
3,967,478	+		GFF3928	0.86	-0.9
3,967,486	-		GFF3928	0.88	-0.9
3,967,486	-		GFF3928	0.88	+0.2
3,967,581	+				-1.3
3,967,589	-				-0.2
3,967,589	-				-1.4
3,967,599	-				-0.1
3,967,624	+				-1.7
3,967,633	-				-0.6
3,967,636	+				-3.3
3,967,649	+				-0.2
3,967,649	+				-1.5
3,967,649	+				-0.8
3,967,649	+				+1.2
3,967,649	+				-0.2
3,967,649	+				-0.3
3,967,652	-				-0.1
3,967,656	-				-1.0
3,967,657	-				-0.2
3,967,657	-				-1.7
3,967,657	-				-0.4
3,967,657	-				-0.2
3,967,657	-				-0.5
3,967,657	-				+0.3
3,967,657	-				+0.1
3,967,657	-				+0.2
3,967,753	+				-0.7
3,967,766	+				-2.0
3,967,865	-		GFF3929	0.10	-1.8
3,967,969	+		GFF3929	0.18	-2.1
3,968,032	+		GFF3929	0.23	-0.6
3,968,181	+		GFF3929	0.35	+0.0
3,968,243	+		GFF3929	0.39	-1.7
3,968,261	-		GFF3929	0.41	-2.4
3,968,422	+		GFF3929	0.53	-1.7
3,968,721	+		GFF3929	0.76	-1.8
3,968,828	-		GFF3929	0.84	-2.0
3,969,018	+				-0.6
3,969,026	-				-1.4
3,969,030	-				-2.1
3,969,060	+				-0.9
3,969,062	+				+0.9
3,969,067	+				-0.5
3,969,070	-				-0.3
3,969,070	-				+0.4
3,969,075	-		GFF3930	0.10	-1.6
3,969,075	-		GFF3930	0.10	-2.0
3,969,075	-		GFF3930	0.10	-1.1
3,969,075	-		GFF3930	0.10	-2.1
3,969,075	-		GFF3930	0.10	-1.6
3,969,140	-		GFF3930	0.27	-1.2
3,969,150	-		GFF3930	0.29	-1.4
3,969,190	+		GFF3930	0.39	-0.3
3,969,193	+		GFF3930	0.40	+0.6
3,969,198	-		GFF3930	0.41	-2.2
3,969,215	+		GFF3930	0.45	+0.6
3,969,215	+		GFF3930	0.45	+0.2
3,969,215	+		GFF3930	0.45	-0.1
3,969,215	+		GFF3930	0.45	-0.5
3,969,223	-		GFF3930	0.47	-3.7
3,969,223	-		GFF3930	0.47	-1.6
3,969,223	-		GFF3930	0.47	+0.1
3,969,223	-		GFF3930	0.47	-0.1
3,969,223	-		GFF3930	0.47	+0.1
3,969,223	-		GFF3930	0.47	-2.8
3,969,223	-		GFF3930	0.47	-1.4
3,969,223	-		GFF3930	0.47	+0.1
3,969,223	-		GFF3930	0.47	-1.2
3,969,230	-		GFF3930	0.49	-2.3
3,969,255	+		GFF3930	0.55	+0.7
3,969,255	+		GFF3930	0.55	+0.0
3,969,255	-		GFF3930	0.55	-2.3
3,969,263	-		GFF3930	0.57	-1.9
3,969,263	-		GFF3930	0.57	-1.9
3,969,263	-		GFF3930	0.57	+0.5
3,969,269	-		GFF3930	0.59	-2.9
3,969,300	-		GFF3930	0.66	+0.9
3,969,300	-		GFF3930	0.66	+0.9
3,969,310	-		GFF3930	0.69	-0.3
3,969,339	+		GFF3930	0.76	+1.4
3,969,346	-		GFF3930	0.78	-1.2
3,969,366	+		GFF3930	0.83	-2.2
3,969,366	+		GFF3930	0.83	+0.4
3,969,366	+		GFF3930	0.83	+0.4
3,969,366	+		GFF3930	0.83	+0.1
3,969,366	+		GFF3930	0.83	-0.5
3,969,366	+		GFF3930	0.83	+0.7
3,969,366	+		GFF3930	0.83	+0.9
3,969,366	+		GFF3930	0.83	-0.6
3,969,366	+		GFF3930	0.83	-0.6
3,969,374	-		GFF3930	0.85	-1.0
3,969,374	-		GFF3930	0.85	-0.2
3,969,374	-		GFF3930	0.85	-0.9
3,969,374	-		GFF3930	0.85	-1.0
3,969,374	-		GFF3930	0.85	-0.1
3,969,381	-		GFF3930	0.87	-2.4
3,969,396	+				+0.6
3,969,400	-				-0.9
3,969,409	-				-3.0
3,969,414	-				-0.8
3,969,416	+				+1.2
3,969,429	+				+0.3
3,969,437	-				-2.5
3,969,454	-				-3.0
3,969,454	-				-1.6
3,969,454	-				-2.1
3,969,454	-				-0.6
3,969,462	+				-0.3
3,969,462	+				-0.8
3,969,467	+				-0.6
3,969,470	-				-2.8
3,969,486	+				-0.2
3,969,507	+				-0.8
3,969,507	+				-1.6
3,969,530	-				-0.6
3,969,548	+				-2.6
3,969,567	+				-1.8
3,969,570	-				-1.7
3,969,642	-		GFF3931	0.12	-0.8
3,969,676	+		GFF3931	0.14	-1.9
3,969,708	-		GFF3931	0.16	-1.9
3,969,722	+		GFF3931	0.17	-1.2
3,969,732	-		GFF3931	0.18	-2.5
3,969,840	-		GFF3931	0.26	-1.4
3,969,840	-		GFF3931	0.26	-1.1
3,969,855	-		GFF3931	0.27	-0.6
3,969,876	+		GFF3931	0.28	+0.1
3,969,877	-		GFF3931	0.28	-1.4
3,969,884	-		GFF3931	0.29	-2.4
3,969,891	-		GFF3931	0.29	-2.9
3,969,976	-		GFF3931	0.35	-2.0
3,969,977	-		GFF3931	0.35	-2.1
3,970,024	-		GFF3931	0.39	-1.4