Strain Fitness in Sphingobium sp. HT1-2 around GFF3801

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,841,848	-		GFF3800	0.14	-0.7
3,841,848	-		GFF3800	0.14	+0.4
3,841,858	-		GFF3800	0.14	-1.0
3,841,874	-		GFF3800	0.16	-2.8
3,841,882	+		GFF3800	0.17	-0.6
3,841,882	+		GFF3800	0.17	-2.1
3,841,882	+		GFF3800	0.17	+0.2
3,841,882	+		GFF3800	0.17	-0.2
3,841,897	+		GFF3800	0.18	+1.0
3,841,922	-		GFF3800	0.20	-0.7
3,841,922	-		GFF3800	0.20	+0.7
3,841,938	-		GFF3800	0.21	+0.4
3,841,945	+		GFF3800	0.22	+0.2
3,841,953	-		GFF3800	0.23	-1.8
3,841,965	+		GFF3800	0.24	-0.4
3,841,969	+		GFF3800	0.24	-2.1
3,841,982	-		GFF3800	0.25	-0.9
3,841,996	+		GFF3800	0.27	-0.6
3,842,002	+		GFF3800	0.27	+0.0
3,842,002	+		GFF3800	0.27	-0.2
3,842,002	+		GFF3800	0.27	-0.4
3,842,002	+		GFF3800	0.27	+0.1
3,842,004	-		GFF3800	0.27	-2.0
3,842,007	+		GFF3800	0.28	-1.9
3,842,007	+		GFF3800	0.28	-1.0
3,842,010	-		GFF3800	0.28	-1.2
3,842,010	-		GFF3800	0.28	+0.4
3,842,015	-		GFF3800	0.28	-0.4
3,842,039	+		GFF3800	0.30	-1.3
3,842,039	+		GFF3800	0.30	-0.5
3,842,047	-		GFF3800	0.31	+0.2
3,842,090	+		GFF3800	0.35	-1.2
3,842,102	+		GFF3800	0.36	-0.8
3,842,102	+		GFF3800	0.36	-1.1
3,842,102	+		GFF3800	0.36	-1.2
3,842,102	+		GFF3800	0.36	-0.4
3,842,102	+		GFF3800	0.36	-0.5
3,842,102	+		GFF3800	0.36	-0.5
3,842,102	+		GFF3800	0.36	-0.2
3,842,107	+		GFF3800	0.36	-0.3
3,842,110	-		GFF3800	0.37	+0.1
3,842,110	-		GFF3800	0.37	+0.3
3,842,110	-		GFF3800	0.37	-0.9
3,842,110	-		GFF3800	0.37	-0.9
3,842,127	-		GFF3800	0.38	-0.3
3,842,127	-		GFF3800	0.38	+0.1
3,842,127	-		GFF3800	0.38	-0.6
3,842,149	+		GFF3800	0.40	-1.3
3,842,157	-		GFF3800	0.41	+0.1
3,842,159	+		GFF3800	0.41	-2.1
3,842,159	+		GFF3800	0.41	-0.3
3,842,167	-		GFF3800	0.42	+0.0
3,842,185	+		GFF3800	0.43	+0.6
3,842,224	+		GFF3800	0.47	-0.6
3,842,252	+		GFF3800	0.49	-1.0
3,842,258	+		GFF3800	0.50	-0.4
3,842,258	+		GFF3800	0.50	+0.6
3,842,261	-		GFF3800	0.50	-0.1
3,842,263	+		GFF3800	0.50	-2.6
3,842,263	+		GFF3800	0.50	-1.5
3,842,266	-		GFF3800	0.50	+0.0
3,842,273	+		GFF3800	0.51	+0.8
3,842,276	+		GFF3800	0.51	-0.6
3,842,276	+		GFF3800	0.51	-0.2
3,842,301	-		GFF3800	0.53	+0.0
3,842,392	+		GFF3800	0.61	-0.4
3,842,409	-		GFF3800	0.63	+1.1
3,842,453	+		GFF3800	0.67	-0.0
3,842,455	+		GFF3800	0.67	+0.4
3,842,455	+		GFF3800	0.67	-0.1
3,842,468	+		GFF3800	0.68	-0.1
3,842,468	+		GFF3800	0.68	-1.1
3,842,468	+		GFF3800	0.68	-0.7
3,842,476	-		GFF3800	0.69	+0.8
3,842,476	-		GFF3800	0.69	-0.5
3,842,477	+		GFF3800	0.69	+0.6
3,842,489	+		GFF3800	0.70	-0.2
3,842,489	+		GFF3800	0.70	+0.4
3,842,492	-		GFF3800	0.70	+1.0
3,842,494	+		GFF3800	0.70	-0.1
3,842,502	-		GFF3800	0.71	+0.7
3,842,506	+		GFF3800	0.71	+0.6
3,842,522	+		GFF3800	0.73	-0.8
3,842,530	+		GFF3800	0.74	-0.2
3,842,530	+		GFF3800	0.74	-0.6
3,842,530	+		GFF3800	0.74	+1.0
3,842,530	+		GFF3800	0.74	+0.5
3,842,530	+		GFF3800	0.74	+0.3
3,842,530	+		GFF3800	0.74	-0.2
3,842,530	+		GFF3800	0.74	-0.4
3,842,531	-		GFF3800	0.74	-0.6
3,842,538	-		GFF3800	0.74	-0.2
3,842,571	+		GFF3800	0.77	+0.3
3,842,571	+		GFF3800	0.77	+0.4
3,842,579	-		GFF3800	0.78	-0.7
3,842,579	-		GFF3800	0.78	-0.8
3,842,579	-		GFF3800	0.78	+0.1
3,842,592	+		GFF3800	0.79	+0.2
3,842,600	-		GFF3800	0.80	-1.7
3,842,631	+		GFF3800	0.82	-0.6
3,842,642	+		GFF3800	0.83	-0.3
3,842,642	+		GFF3800	0.83	-0.6
3,842,642	+		GFF3800	0.83	-0.5
3,842,642	+		GFF3800	0.83	-0.1
3,842,650	-		GFF3800	0.84	-0.4
3,842,650	-		GFF3800	0.84	-0.8
3,842,650	-		GFF3800	0.84	-1.3
3,842,650	-		GFF3800	0.84	-1.0
3,842,650	-		GFF3800	0.84	-1.9
3,842,712	+		GFF3800	0.90	-0.5
3,842,718	+				-0.8
3,842,721	-				-0.4
3,842,722	+				-0.3
3,842,723	+				-0.4
3,842,723	+				-0.2
3,842,754	+				-0.2
3,842,782	+				-0.6
3,842,789	+				-0.4
3,842,789	+				-1.3
3,842,797	-				-1.8
3,842,797	-				+1.1
3,842,825	+				-1.2
3,842,827	+				-2.2
3,842,835	-				-1.2
3,842,835	-				-0.1
3,842,841	-				-0.7
3,842,858	-				-0.4
3,842,859	+				+1.6
3,842,867	-				-2.7
3,842,883	+				-0.1
3,842,883	+				-0.3
3,842,891	-				+0.1
3,842,910	-				-0.9
3,842,914	+				-0.4
3,842,920	+				-0.9
3,842,928	-				+0.0
3,842,939	-				-0.6
3,842,939	-				-1.7
3,842,943	-				+0.1
3,843,053	+		GFF3801	0.14	+0.8
3,843,068	+		GFF3801	0.15	-1.1
3,843,083	-		GFF3801	0.16	+0.4
3,843,086	+		GFF3801	0.16	-1.1
3,843,086	+		GFF3801	0.16	-0.7
3,843,086	+		GFF3801	0.16	-1.6
3,843,092	+		GFF3801	0.16	+0.1
3,843,094	-		GFF3801	0.16	+0.9
3,843,094	-		GFF3801	0.16	+0.4
3,843,094	-		GFF3801	0.16	-0.1
3,843,141	-		GFF3801	0.20	-0.3
3,843,143	+		GFF3801	0.20	-1.4
3,843,143	-		GFF3801	0.20	-0.9
3,843,157	+		GFF3801	0.21	+0.2
3,843,157	+		GFF3801	0.21	-0.9
3,843,157	+		GFF3801	0.21	+1.9
3,843,157	+		GFF3801	0.21	+1.8
3,843,157	+		GFF3801	0.21	-1.6
3,843,157	+		GFF3801	0.21	+0.6
3,843,157	+		GFF3801	0.21	+0.3
3,843,165	-		GFF3801	0.21	-1.5
3,843,165	-		GFF3801	0.21	-0.2
3,843,182	+		GFF3801	0.22	+1.4
3,843,187	+		GFF3801	0.23	-0.7
3,843,190	-		GFF3801	0.23	-2.0
3,843,195	-		GFF3801	0.23	+0.9
3,843,225	+		GFF3801	0.25	-0.2
3,843,225	+		GFF3801	0.25	-0.3
3,843,227	+		GFF3801	0.25	+0.5
3,843,227	-		GFF3801	0.25	-1.7
3,843,233	-		GFF3801	0.26	-0.6
3,843,249	-		GFF3801	0.27	+0.0
3,843,275	-		GFF3801	0.28	-1.6
3,843,311	+		GFF3801	0.31	-0.6
3,843,376	+		GFF3801	0.35	-0.6
3,843,391	+		GFF3801	0.36	-0.2
3,843,404	+		GFF3801	0.37	+0.9
3,843,415	+		GFF3801	0.37	-1.6
3,843,424	+		GFF3801	0.38	-0.4
3,843,430	+		GFF3801	0.38	+0.4
3,843,432	+		GFF3801	0.39	+0.6
3,843,433	-		GFF3801	0.39	+0.3
3,843,438	-		GFF3801	0.39	-0.6
3,843,495	+		GFF3801	0.43	+0.8
3,843,495	+		GFF3801	0.43	-0.2
3,843,497	+		GFF3801	0.43	-2.3
3,843,500	-		GFF3801	0.43	-1.7
3,843,535	-		GFF3801	0.45	-0.9
3,843,552	+		GFF3801	0.46	-1.2
3,843,571	+		GFF3801	0.48	-0.8
3,843,590	-		GFF3801	0.49	-1.1
3,843,598	-		GFF3801	0.49	+0.5
3,843,600	+		GFF3801	0.50	+0.3
3,843,608	-		GFF3801	0.50	-0.5
3,843,619	+		GFF3801	0.51	-0.8
3,843,682	+		GFF3801	0.55	+1.4
3,843,690	-		GFF3801	0.55	+1.7
3,843,719	-		GFF3801	0.57	+0.5
3,843,748	+		GFF3801	0.59	-2.1
3,843,748	+		GFF3801	0.59	+1.6
3,843,748	+		GFF3801	0.59	-1.2
3,843,750	+		GFF3801	0.59	+0.0
3,843,756	-		GFF3801	0.60	-0.3
3,843,756	-		GFF3801	0.60	-0.2
3,843,756	-		GFF3801	0.60	+1.0
3,843,756	-		GFF3801	0.60	-0.9
3,843,756	-		GFF3801	0.60	-2.1
3,843,756	-		GFF3801	0.60	-2.1
3,843,772	-		GFF3801	0.61	-0.8
3,843,802	+		GFF3801	0.63	-1.4
3,843,817	+		GFF3801	0.64	-2.2
3,843,848	-		GFF3801	0.66	-0.6
3,843,874	+		GFF3801	0.68	+0.5
3,843,888	+		GFF3801	0.68	+0.5
3,843,888	+		GFF3801	0.68	+1.1
3,843,893	+		GFF3801	0.69	-0.6
3,843,893	+		GFF3801	0.69	+0.2
3,843,893	+		GFF3801	0.69	+1.0
3,843,901	-		GFF3801	0.69	-1.7
3,843,901	-		GFF3801	0.69	+0.2
3,843,901	-		GFF3801	0.69	-0.6
3,843,908	+		GFF3801	0.70	+0.1
3,843,908	+		GFF3801	0.70	+0.1
3,843,912	+		GFF3801	0.70	+0.1
3,843,920	-		GFF3801	0.71	+0.6
3,843,920	-		GFF3801	0.71	-0.1
3,843,956	+		GFF3801	0.73	-0.4
3,843,961	+		GFF3801	0.73	+0.6
3,843,961	+		GFF3801	0.73	-0.2
3,843,961	+		GFF3801	0.73	-0.6
3,843,961	+		GFF3801	0.73	-0.4
3,843,962	+		GFF3801	0.73	-0.4
3,843,969	-		GFF3801	0.74	-0.9
3,843,969	-		GFF3801	0.74	+0.1
3,843,969	-		GFF3801	0.74	-0.1
3,843,969	-		GFF3801	0.74	+1.6
3,843,970	-		GFF3801	0.74	-1.7
3,844,005	+		GFF3801	0.76	+0.7
3,844,024	+		GFF3801	0.77	-0.5
3,844,024	-		GFF3801	0.77	-1.4
3,844,032	-		GFF3801	0.78	-2.0
3,844,105	-		GFF3801	0.83	+0.1
3,844,106	+		GFF3801	0.83	+1.2
3,844,113	+		GFF3801	0.83	-0.9
3,844,115	-		GFF3801	0.83	-0.5
3,844,147	-		GFF3801	0.85	+1.0
3,844,149	+		GFF3801	0.86	+0.4
3,844,164	+		GFF3801	0.87	-0.7
3,844,167	-		GFF3801	0.87	+0.1
3,844,183	+		GFF3801	0.88	-1.0
3,844,195	+		GFF3801	0.89	-1.9
3,844,195	+		GFF3801	0.89	+0.1
3,844,195	+		GFF3801	0.89	-1.8
3,844,203	-		GFF3801	0.89	-1.7
3,844,203	-		GFF3801	0.89	-2.4
3,844,213	+		GFF3801	0.90	-2.1
3,844,213	-		GFF3801	0.90	-2.1
3,844,247	-				-0.4
3,844,247	-				+0.6
3,844,282	-				-2.3
3,844,291	+				-0.4
3,844,297	+				+0.7
3,844,320	+				-0.3
3,844,325	-				+0.4
3,844,328	+				+0.2
3,844,341	-				+0.2
3,844,361	-				-0.5
3,844,370	+				+0.1
3,844,370	+				+0.2
3,844,370	+				+0.1
3,844,370	+				-0.9
3,844,370	+				+0.5
3,844,370	+				-0.3
3,844,370	+				-2.6
3,844,375	+				+0.3
3,844,378	-				+0.4
3,844,378	-				-0.7
3,844,378	-				+0.0
3,844,378	-				-0.2
3,844,380	+				+0.7
3,844,380	+				+0.2
3,844,380	+				-0.1
3,844,380	+				+0.9
3,844,383	-				+0.7
3,844,388	-				+0.3
3,844,388	-				-1.4
3,844,440	+				-0.6
3,844,447	+				-2.4
3,844,479	-				-2.1
3,844,511	+				+0.2
3,844,519	-				+0.3
3,844,521	+				-2.6
3,844,525	+				-0.7
3,844,525	+				+0.3
3,844,529	-				-1.8
3,844,533	-				-1.7
3,844,533	-				-2.1
3,844,533	-				-0.0
3,844,533	-				-1.7
3,844,533	-				-0.1
3,844,535	-				-0.5
3,844,542	+				+0.4
3,844,550	+				+0.1
3,844,556	-				+1.3
3,844,563	-				-1.0
3,844,568	-				+0.3
3,844,570	+				-0.3
3,844,570	+				-3.4
3,844,570	+				-2.2
3,844,573	+				+0.5
3,844,578	-				+0.0
3,844,578	-				-1.6
3,844,578	-				-1.8
3,844,591	+		GFF3802	0.10	-0.4
3,844,683	-		GFF3802	0.17	-0.7
3,844,697	+		GFF3802	0.18	-1.0
3,844,724	+		GFF3802	0.20	+0.3
3,844,745	+		GFF3802	0.21	-0.7
3,844,775	-		GFF3802	0.23	-0.4
3,844,779	+		GFF3802	0.24	-1.4
3,844,779	+		GFF3802	0.24	+0.3
3,844,779	+		GFF3802	0.24	-0.4
3,844,779	+		GFF3802	0.24	-0.2
3,844,779	+		GFF3802	0.24	-0.4
3,844,779	+		GFF3802	0.24	+0.2
3,844,784	+		GFF3802	0.24	+1.2
3,844,787	-		GFF3802	0.24	-3.3
3,844,787	-		GFF3802	0.24	-0.3
3,844,787	-		GFF3802	0.24	+0.0
3,844,787	-		GFF3802	0.24	-0.1
3,844,792	-		GFF3802	0.24	+0.0
3,844,792	-		GFF3802	0.24	-1.0
3,844,792	-		GFF3802	0.24	-0.9
3,844,858	+		GFF3802	0.29	-1.6
3,844,899	-		GFF3802	0.32	-0.7
3,844,935	+		GFF3802	0.35	+0.5
3,844,939	-		GFF3802	0.35	-2.2
3,844,956	+		GFF3802	0.36	+0.1
3,844,956	+		GFF3802	0.36	-0.4
3,844,956	+		GFF3802	0.36	-2.5
3,844,956	+		GFF3802	0.36	-1.5
3,844,956	+		GFF3802	0.36	+0.1
3,844,956	+		GFF3802	0.36	-1.7
3,844,956	+		GFF3802	0.36	+1.4
3,844,956	+		GFF3802	0.36	-0.6
3,844,956	+		GFF3802	0.36	+0.3
3,844,956	+		GFF3802	0.36	-0.4
3,844,956	+		GFF3802	0.36	-0.0
3,844,956	+		GFF3802	0.36	-0.5
3,844,956	+		GFF3802	0.36	+0.4
3,844,956	+		GFF3802	0.36	-0.9
3,844,956	+		GFF3802	0.36	+0.4
3,844,956	+		GFF3802	0.36	+1.7
3,844,956	+		GFF3802	0.36	-0.5
3,844,964	-		GFF3802	0.37	+0.6
3,844,964	-		GFF3802	0.37	+0.4
3,844,964	-		GFF3802	0.37	+0.0
3,844,964	-		GFF3802	0.37	+1.2
3,844,964	-		GFF3802	0.37	+0.0
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