Strain Fitness in Sphingobium sp. HT1-2 around GFF3677

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,719,148	+				-0.1
3,719,169	+				-0.2
3,719,445	+				+0.1
3,719,458	+				+0.7
3,719,465	+				+0.3
3,719,466	+				-1.4
3,719,479	-				-0.4
3,719,491	-				-1.4
3,719,504	+				-1.7
3,719,541	+				-1.4
3,719,541	+				+0.1
3,719,541	+				-0.4
3,719,541	+				+0.7
3,719,541	+				-0.2
3,719,541	+				+1.0
3,719,544	-				-0.9
3,719,544	-				-0.1
3,719,549	+				+0.8
3,719,549	-				-1.0
3,719,554	+				-2.1
3,719,565	+				+1.1
3,719,565	+				+1.6
3,719,570	+				+0.2
3,719,570	+				-0.4
3,719,570	+				+0.9
3,719,570	+				+0.5
3,719,570	+				-0.5
3,719,570	+				+0.0
3,719,570	+				-1.2
3,719,570	+				+0.9
3,719,573	-				+0.5
3,719,573	-				-2.1
3,719,573	-				-0.5
3,719,573	-				+0.6
3,719,573	-				+0.4
3,719,575	+				-1.8
3,719,578	-				-2.1
3,719,578	-				-0.5
3,719,578	-				-2.8
3,719,578	-				+0.6
3,719,578	-				-0.2
3,719,578	-				-0.9
3,719,578	-				-1.4
3,719,578	-				-0.4
3,719,578	-				-1.2
3,719,578	-				-2.4
3,719,578	-				-1.0
3,719,583	+				+0.3
3,719,596	-				-2.7
3,719,600	+				-1.0
3,719,610	+				+0.1
3,719,618	-				+0.5
3,719,618	-				-0.2
3,719,620	+				-1.0
3,719,648	+				-0.4
3,719,679	-				-0.9
3,719,683	+				+1.2
3,719,696	-				+1.4
3,719,701	-				-1.9
3,719,706	+				-1.8
3,719,708	-				+0.5
3,719,716	+				-0.2
3,719,716	+				-2.1
3,719,739	-		GFF3677	0.10	+1.4
3,719,745	+		GFF3677	0.11	+0.6
3,719,758	-		GFF3677	0.11	-0.4
3,719,808	-		GFF3677	0.13	+0.8
3,719,816	+		GFF3677	0.14	-1.3
3,719,823	-		GFF3677	0.14	-0.9
3,719,824	-		GFF3677	0.14	-0.4
3,719,824	-		GFF3677	0.14	+1.0
3,719,824	-		GFF3677	0.14	-0.7
3,719,830	-		GFF3677	0.14	+0.5
3,719,830	-		GFF3677	0.14	+0.2
3,719,852	-		GFF3677	0.15	+0.4
3,719,852	-		GFF3677	0.15	-1.5
3,719,870	-		GFF3677	0.16	-0.8
3,719,871	+		GFF3677	0.16	-1.2
3,719,890	+		GFF3677	0.17	-2.6
3,719,890	+		GFF3677	0.17	-0.3
3,719,898	-		GFF3677	0.17	-1.9
3,719,898	-		GFF3677	0.17	+0.4
3,719,898	-		GFF3677	0.17	+0.1
3,719,905	+		GFF3677	0.17	-0.0
3,719,908	-		GFF3677	0.17	-0.7
3,719,913	-		GFF3677	0.18	-0.1
3,719,913	-		GFF3677	0.18	-0.5
3,719,915	+		GFF3677	0.18	+1.3
3,719,922	+		GFF3677	0.18	+0.6
3,719,922	+		GFF3677	0.18	-2.8
3,719,922	+		GFF3677	0.18	-2.8
3,719,922	+		GFF3677	0.18	-0.0
3,719,923	-		GFF3677	0.18	-1.8
3,719,924	+		GFF3677	0.18	-1.5
3,719,924	+		GFF3677	0.18	-0.0
3,719,924	+		GFF3677	0.18	+0.5
3,719,930	-		GFF3677	0.18	-1.1
3,719,930	-		GFF3677	0.18	-0.4
3,719,930	-		GFF3677	0.18	-1.9
3,719,930	-		GFF3677	0.18	-1.0
3,719,930	-		GFF3677	0.18	-0.1
3,719,932	-		GFF3677	0.18	+0.9
3,719,932	-		GFF3677	0.18	-2.3
3,719,943	+		GFF3677	0.19	+0.8
3,719,945	+		GFF3677	0.19	+0.0
3,719,947	-		GFF3677	0.19	+0.9
3,719,957	+		GFF3677	0.19	+0.5
3,719,957	+		GFF3677	0.19	-0.0
3,719,965	-		GFF3677	0.20	+0.0
3,719,970	-		GFF3677	0.20	-0.8
3,719,970	-		GFF3677	0.20	-0.2
3,719,979	-		GFF3677	0.20	+2.0
3,719,979	-		GFF3677	0.20	+0.3
3,719,997	-		GFF3677	0.21	+0.9
3,720,020	+		GFF3677	0.22	+0.2
3,720,048	+		GFF3677	0.23	+0.5
3,720,051	-		GFF3677	0.23	+0.7
3,720,055	+		GFF3677	0.23	-0.3
3,720,056	-		GFF3677	0.23	-0.7
3,720,060	+		GFF3677	0.24	+0.2
3,720,060	+		GFF3677	0.24	-0.9
3,720,068	-		GFF3677	0.24	+0.1
3,720,068	-		GFF3677	0.24	-1.2
3,720,081	-		GFF3677	0.25	-0.3
3,720,089	-		GFF3677	0.25	+0.6
3,720,094	+		GFF3677	0.25	-1.5
3,720,121	+		GFF3677	0.26	+0.3
3,720,129	+		GFF3677	0.27	-0.8
3,720,131	+		GFF3677	0.27	-1.0
3,720,139	-		GFF3677	0.27	-0.7
3,720,139	-		GFF3677	0.27	-0.8
3,720,151	+		GFF3677	0.27	+0.3
3,720,213	+		GFF3677	0.30	-1.1
3,720,213	+		GFF3677	0.30	+0.4
3,720,213	+		GFF3677	0.30	-0.8
3,720,235	+		GFF3677	0.31	-0.3
3,720,235	+		GFF3677	0.31	+0.5
3,720,235	+		GFF3677	0.31	-0.3
3,720,241	-		GFF3677	0.31	-1.1
3,720,255	+		GFF3677	0.32	+0.9
3,720,255	+		GFF3677	0.32	-2.8
3,720,258	-		GFF3677	0.32	-2.6
3,720,263	-		GFF3677	0.32	-1.5
3,720,263	-		GFF3677	0.32	-0.8
3,720,273	-		GFF3677	0.33	+0.6
3,720,277	+		GFF3677	0.33	-1.2
3,720,277	+		GFF3677	0.33	+0.1
3,720,277	+		GFF3677	0.33	-0.9
3,720,277	+		GFF3677	0.33	+0.9
3,720,277	+		GFF3677	0.33	-0.5
3,720,277	+		GFF3677	0.33	+0.6
3,720,280	-		GFF3677	0.33	-1.5
3,720,285	-		GFF3677	0.33	-0.4
3,720,285	-		GFF3677	0.33	-0.6
3,720,285	-		GFF3677	0.33	-0.4
3,720,285	-		GFF3677	0.33	-1.7
3,720,301	+		GFF3677	0.34	+0.1
3,720,301	+		GFF3677	0.34	-0.3
3,720,302	-		GFF3677	0.34	-1.4
3,720,309	-		GFF3677	0.34	+0.4
3,720,309	-		GFF3677	0.34	-0.5
3,720,337	+		GFF3677	0.35	-1.8
3,720,421	-		GFF3677	0.39	-1.0
3,720,447	+		GFF3677	0.40	-0.1
3,720,447	+		GFF3677	0.40	-2.2
3,720,481	-		GFF3677	0.41	-0.5
3,720,481	-		GFF3677	0.41	-0.5
3,720,493	-		GFF3677	0.42	+0.6
3,720,496	+		GFF3677	0.42	-0.4
3,720,498	-		GFF3677	0.42	-1.1
3,720,501	+		GFF3677	0.42	+0.1
3,720,509	-		GFF3677	0.42	-1.1
3,720,509	-		GFF3677	0.42	+0.7
3,720,512	+		GFF3677	0.42	+1.0
3,720,512	+		GFF3677	0.42	-1.2
3,720,514	+		GFF3677	0.43	-0.4
3,720,514	+		GFF3677	0.43	+0.9
3,720,514	+		GFF3677	0.43	+1.2
3,720,514	+		GFF3677	0.43	+0.4
3,720,514	+		GFF3677	0.43	+0.7
3,720,514	+		GFF3677	0.43	-1.8
3,720,514	+		GFF3677	0.43	+0.9
3,720,514	+		GFF3677	0.43	-2.0
3,720,514	+		GFF3677	0.43	+0.1
3,720,514	+		GFF3677	0.43	+0.2
3,720,514	+		GFF3677	0.43	+0.3
3,720,514	+		GFF3677	0.43	+0.2
3,720,514	+		GFF3677	0.43	+0.8
3,720,514	+		GFF3677	0.43	-0.2
3,720,514	+		GFF3677	0.43	-0.2
3,720,514	+		GFF3677	0.43	+0.5
3,720,514	+		GFF3677	0.43	-2.2
3,720,514	+		GFF3677	0.43	+0.3
3,720,514	+		GFF3677	0.43	-3.4
3,720,514	+		GFF3677	0.43	-0.0
3,720,514	+		GFF3677	0.43	-0.6
3,720,514	+		GFF3677	0.43	+0.5
3,720,514	+		GFF3677	0.43	+1.1
3,720,514	+		GFF3677	0.43	+1.3
3,720,514	+		GFF3677	0.43	-0.5
3,720,514	+		GFF3677	0.43	-0.2
3,720,514	+		GFF3677	0.43	+0.6
3,720,514	+		GFF3677	0.43	-0.1
3,720,514	+		GFF3677	0.43	+0.7
3,720,514	+		GFF3677	0.43	-2.3
3,720,520	-		GFF3677	0.43	+1.5
3,720,522	-		GFF3677	0.43	+0.3
3,720,522	-		GFF3677	0.43	+0.7
3,720,522	-		GFF3677	0.43	-0.5
3,720,522	-		GFF3677	0.43	-0.3
3,720,522	-		GFF3677	0.43	-0.5
3,720,522	-		GFF3677	0.43	-0.1
3,720,522	-		GFF3677	0.43	+0.1
3,720,522	-		GFF3677	0.43	-2.7
3,720,522	-		GFF3677	0.43	+0.1
3,720,522	-		GFF3677	0.43	-1.0
3,720,522	-		GFF3677	0.43	-1.5
3,720,522	-		GFF3677	0.43	-1.4
3,720,522	-		GFF3677	0.43	-2.3
3,720,522	-		GFF3677	0.43	+0.8
3,720,522	-		GFF3677	0.43	+0.5
3,720,522	-		GFF3677	0.43	-1.0
3,720,522	-		GFF3677	0.43	+1.0
3,720,522	-		GFF3677	0.43	+0.3
3,720,522	-		GFF3677	0.43	-0.0
3,720,522	-		GFF3677	0.43	-0.4
3,720,522	-		GFF3677	0.43	+0.6
3,720,522	-		GFF3677	0.43	-0.1
3,720,522	-		GFF3677	0.43	-0.8
3,720,522	-		GFF3677	0.43	-2.0
3,720,522	-		GFF3677	0.43	-1.0
3,720,522	-		GFF3677	0.43	-0.4
3,720,522	-		GFF3677	0.43	-1.7
3,720,522	-		GFF3677	0.43	+0.5
3,720,522	-		GFF3677	0.43	-0.1
3,720,522	-		GFF3677	0.43	-1.9
3,720,524	+		GFF3677	0.43	+0.5
3,720,549	-		GFF3677	0.44	+0.0
3,720,549	-		GFF3677	0.44	+0.1
3,720,549	-		GFF3677	0.44	+0.7
3,720,549	-		GFF3677	0.44	+0.3
3,720,558	+		GFF3677	0.44	+0.4
3,720,571	+		GFF3677	0.45	-0.6
3,720,571	+		GFF3677	0.45	+1.1
3,720,571	+		GFF3677	0.45	-1.0
3,720,571	+		GFF3677	0.45	+0.4
3,720,571	+		GFF3677	0.45	+0.2
3,720,577	+		GFF3677	0.45	+0.0
3,720,626	+		GFF3677	0.47	+0.8
3,720,626	+		GFF3677	0.47	-0.3
3,720,634	-		GFF3677	0.47	-0.5
3,720,655	-		GFF3677	0.48	-0.9
3,720,669	+		GFF3677	0.49	-0.2
3,720,677	-		GFF3677	0.49	+0.7
3,720,677	-		GFF3677	0.49	-1.8
3,720,720	+		GFF3677	0.51	-0.7
3,720,720	+		GFF3677	0.51	-0.4
3,720,735	+		GFF3677	0.52	+1.1
3,720,780	+		GFF3677	0.54	-2.1
3,720,780	+		GFF3677	0.54	-1.4
3,720,788	-		GFF3677	0.54	+0.2
3,720,788	-		GFF3677	0.54	+0.5
3,720,788	-		GFF3677	0.54	+1.5
3,720,788	-		GFF3677	0.54	+1.1
3,720,804	-		GFF3677	0.55	+0.6
3,720,860	+		GFF3677	0.57	-2.2
3,720,865	+		GFF3677	0.57	-0.3
3,720,873	-		GFF3677	0.57	+0.9
3,720,892	-		GFF3677	0.58	-0.0
3,720,894	+		GFF3677	0.58	-0.9
3,720,894	-		GFF3677	0.58	-1.2
3,720,902	-		GFF3677	0.59	-0.4
3,720,955	+		GFF3677	0.61	-1.2
3,720,963	-		GFF3677	0.61	+0.5
3,720,984	+		GFF3677	0.62	-0.3
3,721,005	-		GFF3677	0.63	-0.8
3,721,006	+		GFF3677	0.63	-1.1
3,721,021	+		GFF3677	0.64	-0.2
3,721,029	+		GFF3677	0.64	-0.7
3,721,029	+		GFF3677	0.64	-0.7
3,721,029	+		GFF3677	0.64	+0.2
3,721,031	+		GFF3677	0.64	-0.4
3,721,031	+		GFF3677	0.64	+0.7
3,721,031	+		GFF3677	0.64	+0.3
3,721,031	+		GFF3677	0.64	-2.8
3,721,031	+		GFF3677	0.64	-0.4
3,721,031	+		GFF3677	0.64	-0.1
3,721,031	+		GFF3677	0.64	+0.5
3,721,031	+		GFF3677	0.64	+0.4
3,721,031	+		GFF3677	0.64	-1.3
3,721,031	+		GFF3677	0.64	-0.6
3,721,031	+		GFF3677	0.64	-0.4
3,721,031	+		GFF3677	0.64	-1.5
3,721,031	+		GFF3677	0.64	+0.2
3,721,031	+		GFF3677	0.64	-0.1
3,721,037	-		GFF3677	0.64	+0.6
3,721,039	-		GFF3677	0.64	+1.0
3,721,039	-		GFF3677	0.64	+0.7
3,721,039	-		GFF3677	0.64	+0.3
3,721,039	-		GFF3677	0.64	-0.0
3,721,039	-		GFF3677	0.64	+0.2
3,721,039	-		GFF3677	0.64	+0.0
3,721,039	-		GFF3677	0.64	-1.8
3,721,039	-		GFF3677	0.64	-1.9
3,721,039	-		GFF3677	0.64	+0.4
3,721,039	-		GFF3677	0.64	-1.0
3,721,039	-		GFF3677	0.64	-1.5
3,721,039	-		GFF3677	0.64	+1.2
3,721,039	-		GFF3677	0.64	+0.2
3,721,039	-		GFF3677	0.64	+0.1
3,721,049	-		GFF3677	0.65	+0.0
3,721,052	+		GFF3677	0.65	-0.5
3,721,060	-		GFF3677	0.65	+0.4
3,721,068	+		GFF3677	0.66	+0.1
3,721,068	+		GFF3677	0.66	+0.5
3,721,068	+		GFF3677	0.66	+0.8
3,721,068	+		GFF3677	0.66	+1.0
3,721,068	+		GFF3677	0.66	-1.4
3,721,068	+		GFF3677	0.66	-0.0
3,721,068	+		GFF3677	0.66	-0.2
3,721,068	+		GFF3677	0.66	-0.1
3,721,071	-		GFF3677	0.66	+0.2
3,721,071	-		GFF3677	0.66	+0.1
3,721,073	+		GFF3677	0.66	+0.0
3,721,073	+		GFF3677	0.66	+0.0
3,721,076	-		GFF3677	0.66	-0.2
3,721,076	-		GFF3677	0.66	-0.5
3,721,076	-		GFF3677	0.66	+0.4
3,721,076	-		GFF3677	0.66	+0.1
3,721,076	-		GFF3677	0.66	+1.0
3,721,076	-		GFF3677	0.66	-2.8
3,721,076	-		GFF3677	0.66	-0.2
3,721,076	-		GFF3677	0.66	+1.0
3,721,076	-		GFF3677	0.66	+0.3
3,721,076	-		GFF3677	0.66	-2.1
3,721,076	-		GFF3677	0.66	-0.1
3,721,076	-		GFF3677	0.66	-0.9
3,721,076	-		GFF3677	0.66	-0.7
3,721,076	-		GFF3677	0.66	+0.5
3,721,081	-		GFF3677	0.66	-0.7
3,721,089	+		GFF3677	0.66	-1.2
3,721,101	+		GFF3677	0.67	-0.7
3,721,102	-		GFF3677	0.67	-2.9
3,721,104	-		GFF3677	0.67	-0.1
3,721,109	-		GFF3677	0.67	+0.8
3,721,109	-		GFF3677	0.67	-0.3
3,721,139	+		GFF3677	0.68	+0.1
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3,721,668	+				-0.4
3,721,672	-				-0.4
3,721,679	+				+0.3
3,721,698	+				-0.2
3,721,703	+				-2.7
3,721,703	+				+1.4
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3,721,711	-				-1.5
3,721,734	-				-2.1
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3,721,785	+				-1.3
3,721,816	-				-0.5
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3,721,859	-				-1.1
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3,721,882	-				+0.4
3,721,889	-				-1.6
3,721,897	+				-0.3
3,721,897	+				+1.2
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3,721,998	+				-2.1
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3,722,007	-				-1.8
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3,722,007	-				-2.4
3,722,055	-				+0.8
3,722,110	-				+0.6
3,722,120	-				-2.5
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