Strain Fitness in Sphingobium sp. HT1-2 around GFF3669

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,711,296	+		GFF3668	0.30	-2.1
3,711,303	-		GFF3668	0.31	+0.3
3,711,303	-		GFF3668	0.31	+1.7
3,711,304	-		GFF3668	0.31	-0.3
3,711,305	+		GFF3668	0.31	-1.8
3,711,306	+		GFF3668	0.31	-0.1
3,711,322	+		GFF3668	0.32	+1.1
3,711,322	+		GFF3668	0.32	+0.3
3,711,330	-		GFF3668	0.33	+1.0
3,711,342	+		GFF3668	0.34	+1.3
3,711,358	-		GFF3668	0.36	-0.5
3,711,369	+		GFF3668	0.37	+0.4
3,711,369	+		GFF3668	0.37	-1.5
3,711,369	+		GFF3668	0.37	+0.5
3,711,370	+		GFF3668	0.37	+1.4
3,711,370	+		GFF3668	0.37	-1.5
3,711,370	+		GFF3668	0.37	+0.2
3,711,377	-		GFF3668	0.38	-0.4
3,711,377	-		GFF3668	0.38	+1.7
3,711,377	-		GFF3668	0.38	+1.1
3,711,377	-		GFF3668	0.38	+0.6
3,711,378	-		GFF3668	0.38	+0.4
3,711,386	+		GFF3668	0.39	+0.8
3,711,391	-		GFF3668	0.39	+0.2
3,711,403	+		GFF3668	0.41	-1.7
3,711,403	+		GFF3668	0.41	-0.2
3,711,408	+		GFF3668	0.41	-0.4
3,711,411	-		GFF3668	0.41	-0.4
3,711,416	-		GFF3668	0.42	+1.2
3,711,434	+		GFF3668	0.44	+0.3
3,711,440	+		GFF3668	0.44	+1.1
3,711,456	-		GFF3668	0.46	+0.2
3,711,481	+		GFF3668	0.48	+0.8
3,711,489	-		GFF3668	0.49	+0.4
3,711,490	+		GFF3668	0.49	+1.2
3,711,503	-		GFF3668	0.51	-1.0
3,711,505	+		GFF3668	0.51	-0.2
3,711,505	+		GFF3668	0.51	-2.0
3,711,505	+		GFF3668	0.51	-0.4
3,711,508	-		GFF3668	0.51	+0.2
3,711,513	-		GFF3668	0.52	-0.6
3,711,513	-		GFF3668	0.52	-0.0
3,711,513	-		GFF3668	0.52	-1.4
3,711,513	-		GFF3668	0.52	-1.2
3,711,530	-		GFF3668	0.53	-1.3
3,711,547	+		GFF3668	0.55	+0.8
3,711,549	+		GFF3668	0.55	+1.0
3,711,556	+		GFF3668	0.56	-0.1
3,711,556	+		GFF3668	0.56	+0.3
3,711,556	+		GFF3668	0.56	+0.9
3,711,562	-		GFF3668	0.56	-1.4
3,711,580	+		GFF3668	0.58	-1.3
3,711,610	+		GFF3668	0.61	-1.9
3,711,614	+		GFF3668	0.62	+0.8
3,711,616	+		GFF3668	0.62	+0.2
3,711,616	+		GFF3668	0.62	+0.9
3,711,616	+		GFF3668	0.62	+0.2
3,711,618	-		GFF3668	0.62	-0.5
3,711,623	-		GFF3668	0.63	+0.8
3,711,624	-		GFF3668	0.63	+1.8
3,711,633	-		GFF3668	0.64	-0.4
3,711,646	-		GFF3668	0.65	-1.9
3,711,646	-		GFF3668	0.65	-0.6
3,711,662	+		GFF3668	0.66	+0.1
3,711,665	-		GFF3668	0.67	+0.2
3,711,670	-		GFF3668	0.67	+0.5
3,711,693	-		GFF3668	0.70	-0.1
3,711,762	+		GFF3668	0.76	+0.9
3,711,801	+		GFF3668	0.80	+0.8
3,711,816	+		GFF3668	0.82	+0.2
3,711,816	+		GFF3668	0.82	-0.8
3,711,819	-		GFF3668	0.82	+0.3
3,711,819	-		GFF3668	0.82	+0.6
3,711,821	+		GFF3668	0.82	+1.0
3,711,824	-		GFF3668	0.83	+2.6
3,711,824	-		GFF3668	0.83	+0.4
3,711,824	-		GFF3668	0.83	+0.4
3,711,826	+		GFF3668	0.83	+0.1
3,711,839	-		GFF3668	0.84	+0.4
3,711,841	+		GFF3668	0.84	+1.8
3,711,857	-		GFF3668	0.86	-2.7
3,711,864	+		GFF3668	0.87	+0.8
3,711,872	-		GFF3668	0.87	+0.1
3,711,889	+		GFF3668	0.89	-1.0
3,711,912	+				+0.8
3,711,915	-				+0.0
3,711,925	+				-0.5
3,711,938	+				+0.0
3,711,944	+				-0.1
3,711,944	+				+0.2
3,711,961	+				-0.3
3,711,971	+				+0.9
3,711,983	+				+1.2
3,711,990	+				-1.3
3,711,990	+				-0.8
3,711,991	-				-1.1
3,711,998	-				-0.7
3,711,998	-				-0.6
3,711,998	-				-1.8
3,712,009	+				+0.8
3,712,085	-				+0.6
3,712,096	-				+0.5
3,712,097	-				-2.0
3,712,131	+				-1.5
3,712,157	+				+0.9
3,712,167	-				-0.3
3,712,204	+				+2.0
3,712,204	+				-0.4
3,712,224	-				-0.1
3,712,229	-				-1.0
3,712,354	+				+0.8
3,712,359	-				+1.3
3,712,362	+				+0.4
3,712,362	+				+0.3
3,712,369	-				-2.0
3,712,370	-				-1.5
3,712,384	+				-2.4
3,712,392	-				-1.5
3,712,392	-				+0.7
3,712,435	+		GFF3669	0.14	+2.2
3,712,443	-		GFF3669	0.15	-1.4
3,712,451	+		GFF3669	0.15	-0.5
3,712,463	+		GFF3669	0.17	-1.3
3,712,471	-		GFF3669	0.17	+1.3
3,712,526	-		GFF3669	0.23	-0.5
3,712,534	+		GFF3669	0.24	-2.9
3,712,537	-		GFF3669	0.24	-2.3
3,712,544	-		GFF3669	0.25	-0.7
3,712,566	-		GFF3669	0.27	+0.2
3,712,594	+		GFF3669	0.30	+0.7
3,712,599	+		GFF3669	0.30	+1.1
3,712,602	-		GFF3669	0.30	+1.2
3,712,614	+		GFF3669	0.32	-0.1
3,712,718	+		GFF3669	0.42	+0.6
3,712,726	-		GFF3669	0.43	-2.7
3,712,726	-		GFF3669	0.43	-1.7
3,712,740	+		GFF3669	0.44	-1.1
3,712,742	+		GFF3669	0.44	+0.0
3,712,791	+		GFF3669	0.49	-0.1
3,712,846	-		GFF3669	0.55	-1.7
3,712,963	-		GFF3669	0.66	+0.6
3,713,009	+		GFF3669	0.71	+0.1
3,713,027	-		GFF3669	0.73	-1.5
3,713,034	-		GFF3669	0.73	-0.4
3,713,065	+		GFF3669	0.76	-0.1
3,713,079	-		GFF3669	0.78	+0.6
3,713,092	+		GFF3669	0.79	-0.7
3,713,099	+		GFF3669	0.80	-1.4
3,713,100	-		GFF3669	0.80	-1.5
3,713,100	-		GFF3669	0.80	-0.9
3,713,164	+		GFF3669	0.86	+0.2
3,713,271	+				+0.9
3,713,279	-				-1.4
3,713,286	+				+0.7
3,713,295	-				-0.4
3,713,295	-				+0.6
3,713,299	-				-0.4
3,713,332	+				+0.2
3,713,381	+				-1.0
3,713,391	-		GFF3670	0.10	-1.8
3,713,430	+		GFF3670	0.15	-1.5
3,713,575	-		GFF3670	0.33	-0.2
3,713,580	-		GFF3670	0.34	-0.8
3,713,580	-		GFF3670	0.34	+0.1
3,713,580	-		GFF3670	0.34	-2.0
3,713,678	-		GFF3670	0.46	+1.2
3,713,685	+		GFF3670	0.47	+0.0
3,713,685	+		GFF3670	0.47	-1.5
3,713,702	-		GFF3670	0.49	-0.7
3,713,723	+		GFF3670	0.51	-1.0
3,713,731	-		GFF3670	0.52	-1.9
3,713,731	-		GFF3670	0.52	-2.0
3,713,748	-		GFF3670	0.55	+1.2
3,713,776	-		GFF3670	0.58	-0.4
3,713,792	-		GFF3670	0.60	-0.6
3,713,858	-		GFF3670	0.68	-0.1
3,713,910	+		GFF3670	0.75	-0.2
3,713,912	-		GFF3670	0.75	-0.7
3,713,951	+		GFF3670	0.80	-2.1
3,713,951	+		GFF3670	0.80	-0.8
3,713,959	-		GFF3670	0.81	-0.4
3,713,996	-		GFF3670	0.86	-0.4
3,714,016	+		GFF3670	0.88	-0.3
3,714,105	+				+0.6
3,714,113	-				-0.4
3,714,113	-				-1.3
3,714,113	-				-2.6
3,714,113	-				+0.9
3,714,113	-				+1.2
3,714,113	-				-1.0
3,714,113	-				-1.3
3,714,113	-				+1.1
3,714,113	-				-0.0
3,714,113	-				+1.0
3,714,137	+				-1.9
3,714,137	+				-0.4
3,714,190	+		GFF3671	0.14	-1.4
3,714,236	-		GFF3671	0.22	+0.6
3,714,265	-		GFF3671	0.26	-0.4
3,714,280	-		GFF3671	0.29	+0.2
3,714,285	+		GFF3671	0.30	-0.1
3,714,293	-		GFF3671	0.31	+0.5