Strain Fitness in Sphingobium sp. HT1-2 around GFF3626

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,674,015	+		GFF3624	0.86	+0.5
3,674,023	-		GFF3624	0.87	+0.4
3,674,033	-		GFF3624	0.88	-1.0
3,674,064	-		GFF3624	0.90	+0.6
3,674,064	-		GFF3624	0.90	-1.4
3,674,068	-				-0.4
3,674,086	-				-0.0
3,674,097	+				+0.9
3,674,105	-				+0.1
3,674,105	-				+0.1
3,674,105	-				-0.5
3,674,142	-				-1.1
3,674,176	+				+1.4
3,674,203	-				+1.4
3,674,279	+				+0.2
3,674,300	+				+0.8
3,674,300	+				+0.1
3,674,300	+				-0.0
3,674,304	+				-0.4
3,674,309	+				+0.5
3,674,309	+				-0.4
3,674,309	+				+0.6
3,674,314	+				-0.9
3,674,328	+		GFF3625	0.11	-0.3
3,674,367	+		GFF3625	0.17	+0.0
3,674,373	+		GFF3625	0.18	-0.3
3,674,444	-		GFF3625	0.29	+0.0
3,674,508	+		GFF3625	0.39	-0.2
3,674,508	+		GFF3625	0.39	+0.8
3,674,508	+		GFF3625	0.39	-0.1
3,674,508	+		GFF3625	0.39	+0.6
3,674,511	-		GFF3625	0.39	-0.4
3,674,516	-		GFF3625	0.40	-0.8
3,674,547	+		GFF3625	0.45	+0.3
3,674,547	+		GFF3625	0.45	+0.4
3,674,547	+		GFF3625	0.45	-1.0
3,674,555	-		GFF3625	0.46	-1.2
3,674,555	-		GFF3625	0.46	-2.4
3,674,558	+		GFF3625	0.46	+0.5
3,674,589	+		GFF3625	0.51	+0.8
3,674,594	+		GFF3625	0.52	-1.6
3,674,597	-		GFF3625	0.52	+2.0
3,674,597	-		GFF3625	0.52	-1.9
3,674,597	-		GFF3625	0.52	-0.2
3,674,602	-		GFF3625	0.53	-0.9
3,674,629	+		GFF3625	0.57	+0.8
3,674,630	-		GFF3625	0.57	+0.9
3,674,654	+		GFF3625	0.61	+0.6
3,674,660	+		GFF3625	0.62	+0.2
3,674,670	+		GFF3625	0.63	-0.5
3,674,670	+		GFF3625	0.63	-0.7
3,674,677	+		GFF3625	0.65	-0.2
3,674,678	-		GFF3625	0.65	+0.1
3,674,678	-		GFF3625	0.65	-0.3
3,674,685	-		GFF3625	0.66	-0.0
3,674,694	+		GFF3625	0.67	-0.3
3,674,706	+		GFF3625	0.69	+0.5
3,674,740	+		GFF3625	0.74	+0.2
3,674,740	+		GFF3625	0.74	+0.0
3,674,740	+		GFF3625	0.74	-0.6
3,674,740	+		GFF3625	0.74	-1.0
3,674,740	+		GFF3625	0.74	-0.6
3,674,740	+		GFF3625	0.74	-1.2
3,674,748	-		GFF3625	0.75	-1.7
3,674,758	-		GFF3625	0.77	-0.8
3,674,758	-		GFF3625	0.77	-0.4
3,674,773	-		GFF3625	0.79	-0.7
3,674,839	+		GFF3625	0.89	+0.6
3,674,857	-				+1.1
3,674,887	-				+0.8
3,675,017	+				-0.2
3,675,034	+				+0.3
3,675,034	+				+0.2
3,675,042	-				-1.4
3,675,042	-				-0.8
3,675,052	+				+0.8
3,675,052	+				-0.9
3,675,052	+				-2.2
3,675,052	+				+0.4
3,675,052	+				-0.9
3,675,052	+				-2.7
3,675,060	-				-0.6
3,675,060	-				-0.3
3,675,060	-				+0.6
3,675,069	-				+0.1
3,675,117	-		GFF3626	0.14	-0.9
3,675,137	+		GFF3626	0.17	-0.9
3,675,147	+		GFF3626	0.18	-0.7
3,675,152	+		GFF3626	0.19	+0.1
3,675,169	+		GFF3626	0.21	+0.2
3,675,196	-		GFF3626	0.24	-0.7
3,675,323	+		GFF3626	0.40	-0.1
3,675,323	+		GFF3626	0.40	+0.4
3,675,331	-		GFF3626	0.41	-0.3
3,675,331	-		GFF3626	0.41	+0.1
3,675,331	-		GFF3626	0.41	+0.1
3,675,333	-		GFF3626	0.42	-0.3
3,675,371	+		GFF3626	0.46	-2.0
3,675,377	+		GFF3626	0.47	-0.8
3,675,392	+		GFF3626	0.49	+0.4
3,675,400	-		GFF3626	0.50	+0.8
3,675,415	+		GFF3626	0.52	+0.1
3,675,436	-		GFF3626	0.55	+0.0
3,675,482	-		GFF3626	0.60	-2.3
3,675,484	+		GFF3626	0.61	-1.1
3,675,522	-		GFF3626	0.66	+0.1
3,675,533	+		GFF3626	0.67	+0.2
3,675,559	+		GFF3626	0.70	-0.1
3,675,565	+		GFF3626	0.71	+0.9
3,675,565	+		GFF3626	0.71	+0.9
3,675,565	+		GFF3626	0.71	-2.6
3,675,565	+		GFF3626	0.71	+0.4
3,675,565	+		GFF3626	0.71	+1.0
3,675,565	+		GFF3626	0.71	+0.9
3,675,573	-		GFF3626	0.72	-2.0
3,675,573	-		GFF3626	0.72	-2.2
3,675,573	-		GFF3626	0.72	+0.9
3,675,573	-		GFF3626	0.72	+0.5
3,675,573	-		GFF3626	0.72	-1.4
3,675,573	-		GFF3626	0.72	+1.1
3,675,573	-		GFF3626	0.72	-1.0
3,675,573	-		GFF3626	0.72	+0.5
3,675,573	-		GFF3626	0.72	+0.6
3,675,575	+		GFF3626	0.72	+0.3
3,675,591	-		GFF3626	0.74	+0.1
3,675,608	-		GFF3626	0.76	+1.8
3,675,608	-		GFF3626	0.76	-1.0
3,675,682	-		GFF3626	0.86	-0.9
3,675,732	-				+0.9
3,675,775	+				-0.3
3,675,775	+				+2.7
3,675,775	+				+0.3
3,675,783	-				+0.4
3,675,794	+				-0.6
3,675,851	-				-0.5
3,675,863	+				-0.3
3,675,863	+				+0.7
3,675,863	+				-0.1
3,675,863	+				-0.1
3,675,863	+				-0.2
3,675,871	-				-0.9
3,675,876	-				-0.8
3,675,887	+				-1.3
3,675,901	+				-0.5
3,675,901	+				+0.3
3,675,901	+				-0.5
3,675,901	+				+0.3
3,675,909	-		GFF3627	0.10	-1.1
3,675,916	+		GFF3627	0.11	-0.2
3,675,998	+		GFF3627	0.19	+0.3
3,675,998	+		GFF3627	0.19	+0.3
3,676,013	+		GFF3627	0.21	+0.5
3,676,018	+		GFF3627	0.22	+0.7
3,676,018	+		GFF3627	0.22	+0.8
3,676,018	+		GFF3627	0.22	+0.9
3,676,026	-		GFF3627	0.22	+0.3
3,676,026	-		GFF3627	0.22	-2.0
3,676,031	-		GFF3627	0.23	-0.4
3,676,031	-		GFF3627	0.23	+0.5
3,676,031	-		GFF3627	0.23	-1.3
3,676,040	+		GFF3627	0.24	+0.5
3,676,076	-		GFF3627	0.28	-2.2
3,676,144	-		GFF3627	0.35	+0.9
3,676,190	+		GFF3627	0.40	-1.6
3,676,190	+		GFF3627	0.40	-0.5
3,676,198	-		GFF3627	0.40	-1.1
3,676,207	+		GFF3627	0.41	+1.7
3,676,232	+		GFF3627	0.44	+0.3
3,676,240	-		GFF3627	0.45	-0.2
3,676,242	+		GFF3627	0.45	-2.0
3,676,242	+		GFF3627	0.45	-0.8
3,676,250	-		GFF3627	0.46	+0.2
3,676,266	+		GFF3627	0.48	+0.2
3,676,272	+		GFF3627	0.48	-0.5
3,676,273	+		GFF3627	0.48	-1.5
3,676,280	-		GFF3627	0.49	+0.5
3,676,280	-		GFF3627	0.49	+0.7
3,676,280	-		GFF3627	0.49	-0.9
3,676,280	-		GFF3627	0.49	-2.0
3,676,311	+		GFF3627	0.52	+1.9
3,676,311	+		GFF3627	0.52	-2.1
3,676,311	+		GFF3627	0.52	-0.7
3,676,311	+		GFF3627	0.52	+1.2
3,676,324	+		GFF3627	0.54	+0.3
3,676,324	+		GFF3627	0.54	-1.6
3,676,324	+		GFF3627	0.54	-0.6
3,676,375	-		GFF3627	0.59	-3.4
3,676,375	-		GFF3627	0.59	-0.4
3,676,381	-		GFF3627	0.60	+2.4
3,676,381	-		GFF3627	0.60	+0.1
3,676,381	-		GFF3627	0.60	+0.3
3,676,391	-		GFF3627	0.61	-0.1
3,676,395	-		GFF3627	0.61	+1.1
3,676,501	-		GFF3627	0.72	-0.0
3,676,501	-		GFF3627	0.72	+2.5
3,676,524	-		GFF3627	0.75	+1.4
3,676,524	-		GFF3627	0.75	+0.7
3,676,524	-		GFF3627	0.75	+1.0
3,676,525	-		GFF3627	0.75	+1.3
3,676,535	+		GFF3627	0.76	-1.4
3,676,588	-		GFF3627	0.81	+0.2
3,676,632	+		GFF3627	0.86	-0.0
3,676,632	+		GFF3627	0.86	-0.4
3,676,639	+		GFF3627	0.87	+0.5
3,676,640	-		GFF3627	0.87	-0.3
3,676,645	-		GFF3627	0.87	+0.2
3,676,668	+		GFF3627	0.90	+0.2
3,676,683	+				+0.2
3,676,706	+				+0.0
3,676,727	-				+1.0
3,676,791	-				+1.4
3,676,791	-				+0.9