Strain Fitness in Sphingobium sp. HT1-2 around GFF3624

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,671,906	-		GFF3623	0.61	-0.4
3,671,917	+		GFF3623	0.61	+1.6
3,671,925	-		GFF3623	0.62	-1.1
3,671,925	-		GFF3623	0.62	-0.4
3,671,925	-		GFF3623	0.62	+0.1
3,671,925	-		GFF3623	0.62	-0.8
3,671,925	-		GFF3623	0.62	+0.2
3,671,947	+		GFF3623	0.63	-0.5
3,672,016	+		GFF3623	0.66	-0.7
3,672,024	-		GFF3623	0.66	-1.5
3,672,026	+		GFF3623	0.66	-0.4
3,672,043	-		GFF3623	0.67	+1.2
3,672,043	-		GFF3623	0.67	-1.6
3,672,043	-		GFF3623	0.67	+0.3
3,672,043	-		GFF3623	0.67	-0.7
3,672,071	+		GFF3623	0.68	-1.2
3,672,071	+		GFF3623	0.68	-0.8
3,672,071	+		GFF3623	0.68	+0.9
3,672,071	+		GFF3623	0.68	-0.3
3,672,071	+		GFF3623	0.68	+1.2
3,672,079	-		GFF3623	0.69	-0.0
3,672,079	-		GFF3623	0.69	+0.1
3,672,079	-		GFF3623	0.69	-0.2
3,672,080	+		GFF3623	0.69	-1.4
3,672,080	+		GFF3623	0.69	-0.3
3,672,084	-		GFF3623	0.69	-0.2
3,672,084	-		GFF3623	0.69	-1.0
3,672,088	-		GFF3623	0.69	+0.6
3,672,088	-		GFF3623	0.69	-0.8
3,672,093	-		GFF3623	0.69	-0.3
3,672,093	-		GFF3623	0.69	+0.8
3,672,093	-		GFF3623	0.69	-1.9
3,672,093	-		GFF3623	0.69	+0.0
3,672,109	+		GFF3623	0.70	-1.2
3,672,109	+		GFF3623	0.70	-2.2
3,672,116	+		GFF3623	0.70	+1.8
3,672,116	+		GFF3623	0.70	-1.0
3,672,117	-		GFF3623	0.71	-1.8
3,672,117	-		GFF3623	0.71	-1.0
3,672,117	-		GFF3623	0.71	-1.4
3,672,124	-		GFF3623	0.71	-0.4
3,672,138	-		GFF3623	0.72	-0.3
3,672,150	-		GFF3623	0.72	-1.0
3,672,159	+		GFF3623	0.73	+0.4
3,672,177	+		GFF3623	0.73	-0.1
3,672,177	+		GFF3623	0.73	-2.0
3,672,187	+		GFF3623	0.74	+0.7
3,672,189	+		GFF3623	0.74	-0.7
3,672,197	-		GFF3623	0.74	-1.3
3,672,199	+		GFF3623	0.74	+0.2
3,672,199	+		GFF3623	0.74	-1.1
3,672,209	+		GFF3623	0.75	+0.5
3,672,223	+		GFF3623	0.75	-2.9
3,672,223	+		GFF3623	0.75	-0.2
3,672,226	-		GFF3623	0.76	+0.2
3,672,226	-		GFF3623	0.76	-1.3
3,672,231	-		GFF3623	0.76	+0.2
3,672,243	+		GFF3623	0.76	-0.5
3,672,245	-		GFF3623	0.77	+1.3
3,672,246	-		GFF3623	0.77	-0.1
3,672,251	-		GFF3623	0.77	-0.0
3,672,259	+		GFF3623	0.77	-0.7
3,672,259	+		GFF3623	0.77	-0.2
3,672,259	+		GFF3623	0.77	+0.7
3,672,264	+		GFF3623	0.77	-0.5
3,672,284	+		GFF3623	0.78	+0.4
3,672,363	-		GFF3623	0.82	-1.0
3,672,365	-		GFF3623	0.82	+0.2
3,672,408	-		GFF3623	0.84	+0.0
3,672,408	-		GFF3623	0.84	+0.0
3,672,423	-		GFF3623	0.85	-0.1
3,672,430	-		GFF3623	0.85	-2.2
3,672,437	-		GFF3623	0.85	-0.9
3,672,453	+		GFF3623	0.86	-1.8
3,672,461	-		GFF3623	0.87	-0.3
3,672,461	-		GFF3623	0.87	+0.3
3,672,461	-		GFF3623	0.87	-0.2
3,672,476	+		GFF3623	0.87	+0.3
3,672,476	+		GFF3623	0.87	-0.3
3,672,497	+		GFF3623	0.88	-0.8
3,672,502	+		GFF3623	0.89	-0.2
3,672,503	-		GFF3623	0.89	-0.2
3,672,510	-		GFF3623	0.89	-1.2
3,672,512	+		GFF3623	0.89	-1.5
3,672,520	-		GFF3623	0.89	+0.8
3,672,526	+		GFF3623	0.90	+0.5
3,672,526	+		GFF3623	0.90	-0.7
3,672,534	-				+0.7
3,672,534	-				-1.0
3,672,534	-				-2.3
3,672,535	-				+0.3
3,672,556	+				-0.1
3,672,556	+				+0.0
3,672,556	+				+0.1
3,672,564	-				+1.0
3,672,564	-				-1.3
3,672,564	-				-0.7
3,672,582	-				+0.3
3,672,584	+				-0.0
3,672,587	+				+0.0
3,672,612	-				-2.2
3,672,629	+				+0.8
3,672,632	-				-0.5
3,672,637	-				+0.8
3,672,645	+				-0.1
3,672,657	-				-0.5
3,672,663	+				+0.0
3,672,664	+				-0.3
3,672,664	+				-1.0
3,672,726	-				-0.2
3,672,726	-				+0.8
3,672,726	-				-0.8
3,672,728	-				-1.5
3,672,737	+				-2.5
3,672,740	-				-0.3
3,672,756	-				-1.9
3,672,756	-				+1.3
3,672,756	-				-1.4
3,672,756	-				+0.4
3,672,776	+				-2.4
3,672,776	+				-1.6
3,672,776	+				-0.2
3,672,776	+				-1.8
3,672,776	+				+0.6
3,672,776	+				-0.3
3,672,776	+				-0.3
3,672,776	+				-1.7
3,672,776	+				-2.0
3,672,776	+				-2.0
3,672,776	+				-0.5
3,672,776	+				-1.1
3,672,776	+				-0.5
3,672,776	+				-1.4
3,672,776	+				-1.0
3,672,776	+				-0.1
3,672,776	+				-0.9
3,672,776	+				+0.0
3,672,776	+				-0.0
3,672,776	+				-0.6
3,672,776	+				-0.5
3,672,776	+				+0.1
3,672,776	+				-0.9
3,672,784	-				+0.4
3,672,784	-				-1.5
3,672,784	-				-0.5
3,672,784	-				-0.8
3,672,784	-				-0.1
3,672,784	-				-0.4
3,672,784	-				-0.2
3,672,784	-				-0.3
3,672,784	-				+0.3
3,672,784	-				+0.2
3,672,784	-				+0.2
3,672,784	-				+0.1
3,672,784	-				-1.0
3,672,827	-				-0.3
3,672,828	+				-1.7
3,672,828	+				-0.1
3,672,828	+				+0.6
3,672,828	+				-3.0
3,672,832	+				-1.1
3,672,835	-				+0.1
3,672,836	-				-1.8
3,672,844	-				-1.5
3,672,852	+				-0.0
3,672,854	-				-1.6
3,672,859	+				+0.6
3,672,860	-				-0.4
3,672,860	-				+0.4
3,672,864	+				-0.7
3,672,867	-				-0.9
3,672,867	-				+0.6
3,672,867	-				-2.0
3,672,869	+				+1.3
3,672,872	-				-0.1
3,672,872	-				+0.4
3,672,872	-				-0.2
3,672,890	+				-0.7
3,672,890	+				+0.5
3,672,890	+				+0.1
3,672,890	+				-1.1
3,672,898	-				-0.5
3,672,898	-				-1.6
3,672,900	+				-0.6
3,672,914	+				+0.5
3,672,915	+				+0.2
3,672,920	+				+2.0
3,672,923	-				-0.5
3,672,923	-				-0.4
3,672,925	+				-0.9
3,672,926	+				-1.2
3,672,930	+				+0.6
3,672,933	-				+0.1
3,672,942	-				+1.2
3,672,959	+				-2.9
3,672,965	+				+0.5
3,672,973	-				-2.6
3,672,977	+				-0.8
3,672,985	-				-0.8
3,673,005	+		GFF3624	0.11	-1.5
3,673,013	-		GFF3624	0.11	-0.3
3,673,013	-		GFF3624	0.11	-0.2
3,673,013	-		GFF3624	0.11	-1.0
3,673,019	-		GFF3624	0.12	-1.9
3,673,044	-		GFF3624	0.14	-1.5
3,673,070	+		GFF3624	0.16	+0.7
3,673,079	+		GFF3624	0.16	-0.8
3,673,079	+		GFF3624	0.16	-1.1
3,673,099	-		GFF3624	0.18	-2.0
3,673,110	+		GFF3624	0.19	-0.1
3,673,137	+		GFF3624	0.21	+0.7
3,673,137	+		GFF3624	0.21	-0.8
3,673,137	+		GFF3624	0.21	+0.7
3,673,145	+		GFF3624	0.21	-0.4
3,673,145	-		GFF3624	0.21	-1.8
3,673,145	-		GFF3624	0.21	+0.0
3,673,145	-		GFF3624	0.21	+0.6
3,673,163	-		GFF3624	0.22	-0.5
3,673,168	-		GFF3624	0.23	+0.9
3,673,178	-		GFF3624	0.24	-0.6
3,673,178	-		GFF3624	0.24	+0.3
3,673,178	-		GFF3624	0.24	-1.0
3,673,178	-		GFF3624	0.24	-1.7
3,673,178	-		GFF3624	0.24	-1.3
3,673,204	+		GFF3624	0.26	+0.0
3,673,204	+		GFF3624	0.26	-1.3
3,673,212	-		GFF3624	0.26	+0.6
3,673,225	+		GFF3624	0.27	+0.2
3,673,225	+		GFF3624	0.27	-0.4
3,673,225	+		GFF3624	0.27	+0.7
3,673,225	+		GFF3624	0.27	-1.0
3,673,225	+		GFF3624	0.27	+0.5
3,673,225	+		GFF3624	0.27	-0.4
3,673,233	-		GFF3624	0.28	-0.3
3,673,233	-		GFF3624	0.28	-2.0
3,673,233	-		GFF3624	0.28	-2.1
3,673,241	+		GFF3624	0.28	-0.6
3,673,241	+		GFF3624	0.28	-1.9
3,673,242	-		GFF3624	0.28	+0.6
3,673,242	-		GFF3624	0.28	-1.5
3,673,247	+		GFF3624	0.29	+0.6
3,673,247	+		GFF3624	0.29	+1.2
3,673,249	-		GFF3624	0.29	-0.1
3,673,249	-		GFF3624	0.29	-0.2
3,673,249	-		GFF3624	0.29	-2.8
3,673,255	-		GFF3624	0.29	-1.4
3,673,279	+		GFF3624	0.31	-1.7
3,673,285	+		GFF3624	0.32	+0.8
3,673,285	+		GFF3624	0.32	+0.0
3,673,293	-		GFF3624	0.32	-0.2
3,673,294	-		GFF3624	0.32	+0.0
3,673,298	-		GFF3624	0.33	+0.1
3,673,300	-		GFF3624	0.33	-1.8
3,673,325	+		GFF3624	0.35	+0.8
3,673,325	+		GFF3624	0.35	+1.4
3,673,325	+		GFF3624	0.35	+0.0
3,673,335	+		GFF3624	0.35	-1.0
3,673,335	+		GFF3624	0.35	-1.5
3,673,335	+		GFF3624	0.35	+0.0
3,673,335	+		GFF3624	0.35	-0.0
3,673,336	+		GFF3624	0.35	-0.0
3,673,338	+		GFF3624	0.36	-0.8
3,673,343	-		GFF3624	0.36	+0.3
3,673,343	-		GFF3624	0.36	-0.4
3,673,343	-		GFF3624	0.36	-0.8
3,673,344	-		GFF3624	0.36	-2.0
3,673,344	-		GFF3624	0.36	-0.2
3,673,344	-		GFF3624	0.36	-0.8
3,673,353	-		GFF3624	0.37	-0.0
3,673,355	+		GFF3624	0.37	+0.0
3,673,355	+		GFF3624	0.37	-0.7
3,673,355	+		GFF3624	0.37	-1.2
3,673,355	+		GFF3624	0.37	+0.0
3,673,355	+		GFF3624	0.37	+1.5
3,673,355	+		GFF3624	0.37	-0.7
3,673,363	-		GFF3624	0.37	-0.2
3,673,363	-		GFF3624	0.37	-2.7
3,673,363	-		GFF3624	0.37	+0.3
3,673,363	-		GFF3624	0.37	-0.1
3,673,371	-		GFF3624	0.38	-1.0
3,673,432	-		GFF3624	0.43	-0.8
3,673,476	+		GFF3624	0.46	+0.7
3,673,483	+		GFF3624	0.46	+0.1
3,673,483	+		GFF3624	0.46	+1.0
3,673,483	+		GFF3624	0.46	+0.3
3,673,483	+		GFF3624	0.46	-2.0
3,673,483	+		GFF3624	0.46	+0.3
3,673,489	-		GFF3624	0.47	-0.8
3,673,491	-		GFF3624	0.47	-0.2
3,673,491	-		GFF3624	0.47	-2.0
3,673,491	-		GFF3624	0.47	-2.0
3,673,491	-		GFF3624	0.47	+0.4
3,673,491	-		GFF3624	0.47	-0.2
3,673,496	-		GFF3624	0.47	-0.6
3,673,496	-		GFF3624	0.47	-1.0
3,673,561	+		GFF3624	0.52	+1.2
3,673,568	+		GFF3624	0.53	-0.5
3,673,570	-		GFF3624	0.53	+1.6
3,673,573	+		GFF3624	0.53	-2.0
3,673,586	+		GFF3624	0.54	+0.9
3,673,596	+		GFF3624	0.55	+0.5
3,673,596	+		GFF3624	0.55	-1.9
3,673,596	+		GFF3624	0.55	+0.2
3,673,604	-		GFF3624	0.55	-0.5
3,673,623	+		GFF3624	0.57	+0.2
3,673,638	-		GFF3624	0.58	+0.5
3,673,643	+		GFF3624	0.58	+0.5
3,673,643	+		GFF3624	0.58	-1.2
3,673,663	+		GFF3624	0.60	-1.7
3,673,671	-		GFF3624	0.60	+0.4
3,673,694	+		GFF3624	0.62	+0.6
3,673,694	+		GFF3624	0.62	-2.0
3,673,694	+		GFF3624	0.62	-0.8
3,673,694	+		GFF3624	0.62	-1.4
3,673,702	-		GFF3624	0.63	+0.3
3,673,702	-		GFF3624	0.63	-1.0
3,673,741	-		GFF3624	0.66	-1.9
3,673,751	-		GFF3624	0.66	-0.5
3,673,753	+		GFF3624	0.67	-0.5
3,673,753	+		GFF3624	0.67	+1.2
3,673,753	+		GFF3624	0.67	-1.0
3,673,754	+		GFF3624	0.67	-0.4
3,673,761	-		GFF3624	0.67	+0.6
3,673,761	-		GFF3624	0.67	-0.6
3,673,775	+		GFF3624	0.68	+1.0
3,673,775	-		GFF3624	0.68	+0.3
3,673,783	-		GFF3624	0.69	-0.9
3,673,783	-		GFF3624	0.69	+0.5
3,673,829	-		GFF3624	0.72	-0.6
3,673,842	-		GFF3624	0.73	-1.7
3,673,842	-		GFF3624	0.73	+0.7
3,673,849	+		GFF3624	0.74	-0.3
3,673,855	-		GFF3624	0.74	+1.0
3,673,857	+		GFF3624	0.74	+0.8
3,673,865	-		GFF3624	0.75	-1.1
3,673,867	+		GFF3624	0.75	-0.2
3,673,875	-		GFF3624	0.76	+0.2
3,673,897	+		GFF3624	0.77	-1.4
3,673,905	-		GFF3624	0.78	-0.4
3,673,905	-		GFF3624	0.78	-0.5
3,673,906	-		GFF3624	0.78	+0.2
3,673,906	-		GFF3624	0.78	-0.0
3,673,906	-		GFF3624	0.78	-0.9
3,673,906	-		GFF3624	0.78	+0.0
3,673,912	-		GFF3624	0.78	-0.6
3,673,924	-		GFF3624	0.79	-1.1
3,673,988	-		GFF3624	0.84	+0.4
3,674,015	+		GFF3624	0.86	+0.4
3,674,023	-		GFF3624	0.87	+0.3
3,674,023	-		GFF3624	0.87	-1.1
3,674,023	-		GFF3624	0.87	-0.3
3,674,025	+		GFF3624	0.87	+0.0
3,674,064	-		GFF3624	0.90	+0.4
3,674,064	-		GFF3624	0.90	-1.5
3,674,068	-				-0.5
3,674,074	-				-0.3
3,674,086	-				-0.2
3,674,097	+				+0.7
3,674,097	+				-2.1
3,674,105	-				+1.3
3,674,105	-				-0.0
3,674,105	-				-0.1
3,674,105	-				-0.7
3,674,109	+				+0.4
3,674,134	+				-0.2
3,674,142	-				-0.0
3,674,142	-				-1.3
3,674,157	-				+0.1
3,674,163	+				+1.0
3,674,163	+				-0.5
3,674,168	+				-0.2
3,674,176	+				+1.2
3,674,203	-				+1.3
3,674,277	-				+0.7
3,674,279	+				-1.7
3,674,279	+				+0.0
3,674,300	+				+0.7
3,674,300	+				-0.1
3,674,300	+				-0.2
3,674,303	-				+0.7
3,674,303	-				+0.9
3,674,304	+				-0.5
3,674,309	+				+0.4
3,674,309	+				-0.6
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