Strain Fitness in Sphingobium sp. HT1-2 around GFF3580

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,625,965	-				-1.1
3,625,977	-				-2.2
3,626,003	-				-0.5
3,626,018	-				-1.7
3,626,093	-				-0.1
3,626,095	+				-2.3
3,626,101	-				+1.2
3,626,110	-				-0.3
3,626,115	-				-1.4
3,626,153	-				-1.2
3,626,170	-				-0.7
3,626,179	+				-0.7
3,626,179	+				-1.2
3,626,179	+				-2.0
3,626,179	+				-1.3
3,626,179	+				-1.4
3,626,179	+				-0.1
3,626,179	+				-1.8
3,626,179	+				-0.5
3,626,179	+				-0.0
3,626,179	+				-0.5
3,626,186	+				-1.4
3,626,186	+				-1.4
3,626,187	-				-0.4
3,626,187	-				-0.8
3,626,187	-				+0.5
3,626,187	-				-0.9
3,626,187	-				-1.7
3,626,187	-				-0.4
3,626,187	-				-0.4
3,626,187	-				-1.8
3,626,187	-				+0.6
3,626,187	-				-0.3
3,626,187	-				-0.1
3,626,187	-				-0.3
3,626,187	-				+0.8
3,626,187	-				+0.1
3,626,194	-				-0.2
3,626,194	-				-0.7
3,626,194	-				+0.1
3,626,194	-				+0.7
3,626,194	-				+0.5
3,626,194	-				-0.9
3,626,194	-				+0.5
3,626,194	-				+0.3
3,626,195	-				+1.4
3,626,197	-				-0.1
3,626,204	-				-2.7
3,626,205	+				-1.8
3,626,205	+				-0.2
3,626,205	+				-1.6
3,626,205	-				+0.1
3,626,205	-				-0.9
3,626,205	-				-0.2
3,626,205	-				+1.1
3,626,205	-				+1.2
3,626,205	-				-0.2
3,626,207	+				-0.8
3,626,213	-				+1.0
3,626,224	-				+0.2
3,626,229	+				-0.1
3,626,229	-				-1.3
3,626,230	-				+0.4
3,626,235	+				-1.6
3,626,235	+				-0.6
3,626,236	+				-0.4
3,626,236	+				+0.8
3,626,237	+				-1.0
3,626,237	-				-1.4
3,626,237	-				-2.3
3,626,243	-				-1.4
3,626,264	+				+2.3
3,626,277	+				-1.8
3,626,285	-				-0.5
3,626,306	+				+0.1
3,626,309	-				-0.7
3,626,313	-				-0.7
3,626,316	+				-0.2
3,626,320	+				-0.5
3,626,320	+				-0.1
3,626,320	+				-0.1
3,626,320	+				-0.8
3,626,320	+				-0.4
3,626,320	+				-1.4
3,626,324	-				-1.5
3,626,328	-				-2.9
3,626,328	-				+0.4
3,626,328	-				-1.5
3,626,328	-				-0.7
3,626,328	-				+0.3
3,626,333	-				-0.3
3,626,335	+				-2.2
3,626,335	+				+0.4
3,626,335	+				-1.7
3,626,335	+				-0.7
3,626,335	+				-1.7
3,626,335	+				-0.1
3,626,335	+				-0.6
3,626,337	+				+0.5
3,626,338	-				-0.9
3,626,343	-				-0.4
3,626,343	-				+2.2
3,626,343	-				-0.4
3,626,343	-				-0.8
3,626,343	-				+0.9
3,626,343	-				+0.3
3,626,343	-				-1.9
3,626,343	-				+0.5
3,626,343	-				-1.4
3,626,343	-				-1.1
3,626,343	-				-0.1
3,626,343	-				+0.2
3,626,343	-				-0.4
3,626,343	-				-2.1
3,626,343	-				+0.1
3,626,345	+				+0.1
3,626,353	-				-1.1
3,626,362	+				-0.9
3,626,364	+				-0.9
3,626,364	+				-0.5
3,626,364	+				+0.5
3,626,364	+				-1.8
3,626,364	+				-2.6
3,626,364	-				+0.5
3,626,364	-				+0.2
3,626,364	-				+0.2
3,626,367	+				-0.4
3,626,372	+				-0.5
3,626,372	+				+0.5
3,626,372	+				-0.1
3,626,372	-				-0.6
3,626,372	-				+0.2
3,626,372	-				-0.7
3,626,377	-				-1.3
3,626,380	+				-1.6
3,626,380	-				-2.2
3,626,380	-				-0.7
3,626,387	+				-2.6
3,626,400	+				-2.5
3,626,400	+				+0.3
3,626,400	+				-0.8
3,626,408	-				-0.9
3,626,413	+				+0.7
3,626,418	-				-1.6
3,626,421	-				+0.5
3,626,421	-				+0.1
3,626,421	-				+0.6
3,626,423	+				-1.0
3,626,436	-				-1.2
3,626,459	-				+1.4
3,626,475	-		GFF3579	0.22	+1.6
3,626,478	+		GFF3579	0.25	+0.6
3,626,484	+		GFF3579	0.30	-2.1
3,626,493	+		GFF3579	0.38	-0.5
3,626,496	+		GFF3579	0.40	+0.0
3,626,503	+		GFF3579	0.46	-1.6
3,626,511	-		GFF3579	0.53	-0.9
3,626,560	-				-0.2
3,626,574	+				-1.8
3,626,598	+				-1.5
3,626,616	-				-1.1
3,626,619	+				-1.8
3,626,627	+				+0.0
3,626,627	-				+0.1
3,626,629	+				-1.5
3,626,629	+				-1.9
3,626,637	-				+1.0
3,626,637	-				-0.2
3,626,645	-				-1.0
3,626,646	+				-1.8
3,626,651	+				-0.4
3,626,651	+				-0.6
3,626,651	+				+0.2
3,626,654	-				-0.4
3,626,666	+				-1.4
3,626,669	-				+0.7
3,626,669	-				-1.5
3,626,677	-				-1.0
3,626,691	+				+0.6
3,626,693	+				-2.3
3,626,693	+				-2.1
3,626,693	+				-1.4
3,626,699	-				+1.3
3,626,699	-				-0.3
3,626,705	+				+1.2
3,626,705	+				-1.6
3,626,705	+				-0.1
3,626,705	+				+0.1
3,626,713	-				+0.3
3,626,713	-				+0.5
3,626,713	-				-0.1
3,626,713	-				-0.1
3,626,723	-				+0.4
3,626,733	+				-0.0
3,626,733	+				-1.4
3,626,739	+				-2.2
3,626,739	+				-2.0
3,626,740	-				-0.6
3,626,741	-				-1.8
3,626,741	-				-2.2
3,626,741	-				-0.1
3,626,747	-				+0.3
3,626,748	-				+0.6
3,626,748	-				+0.0
3,626,748	-				-2.5
3,626,748	-				-0.5
3,626,753	-				-0.4
3,626,759	+				-0.3
3,626,760	+				-0.4
3,626,787	+				-1.0
3,626,816	+				-2.8
3,626,821	+				-1.6
3,626,824	-				-1.5
3,626,940	+				-1.4
3,626,940	-				-0.4
3,626,965	-				+1.1
3,626,994	-				+0.1
3,627,056	-		GFF3580	0.12	-1.5
3,627,100	+		GFF3580	0.17	-0.1
3,627,108	-		GFF3580	0.18	+0.8
3,627,109	-		GFF3580	0.18	+0.2
3,627,149	-		GFF3580	0.23	-1.0
3,627,179	-		GFF3580	0.27	+0.4
3,627,181	+		GFF3580	0.27	-1.7
3,627,181	+		GFF3580	0.27	-1.6
3,627,181	-		GFF3580	0.27	-0.7
3,627,184	+		GFF3580	0.27	-1.5
3,627,186	+		GFF3580	0.27	-1.8
3,627,189	-		GFF3580	0.28	-0.3
3,627,189	-		GFF3580	0.28	+1.1
3,627,192	+		GFF3580	0.28	-1.7
3,627,192	-		GFF3580	0.28	-0.6
3,627,192	-		GFF3580	0.28	-1.5
3,627,194	-		GFF3580	0.28	-0.3
3,627,200	-		GFF3580	0.29	-2.3
3,627,200	-		GFF3580	0.29	-0.6
3,627,204	+		GFF3580	0.30	-0.4
3,627,212	-		GFF3580	0.31	-2.5
3,627,234	-		GFF3580	0.33	-2.1
3,627,253	-		GFF3580	0.36	+0.2
3,627,320	+		GFF3580	0.44	+0.0
3,627,321	-		GFF3580	0.44	-1.5
3,627,322	-		GFF3580	0.44	+0.5
3,627,338	-		GFF3580	0.46	-0.2
3,627,415	+		GFF3580	0.55	+0.5
3,627,416	-		GFF3580	0.55	-1.4
3,627,445	-		GFF3580	0.59	-3.0
3,627,455	-		GFF3580	0.60	-0.0
3,627,459	+		GFF3580	0.60	+0.2
3,627,481	-		GFF3580	0.63	-1.5
3,627,484	-		GFF3580	0.63	-0.6
3,627,484	-		GFF3580	0.63	-0.1
3,627,486	-		GFF3580	0.64	-0.3
3,627,509	+		GFF3580	0.66	-2.0
3,627,509	-		GFF3580	0.66	+0.1
3,627,534	-		GFF3580	0.69	-0.0
3,627,544	-		GFF3580	0.71	-0.3
3,627,546	+		GFF3580	0.71	-0.4
3,627,546	+		GFF3580	0.71	-0.7
3,627,553	-		GFF3580	0.72	+1.1
3,627,554	-		GFF3580	0.72	-0.4
3,627,564	-		GFF3580	0.73	-0.3
3,627,568	+		GFF3580	0.74	-0.8
3,627,571	-		GFF3580	0.74	-1.7
3,627,591	-		GFF3580	0.76	+1.3
3,627,592	-		GFF3580	0.76	-1.5
3,627,602	-		GFF3580	0.78	-1.7
3,627,605	+		GFF3580	0.78	-2.0
3,627,608	-		GFF3580	0.78	+0.6
3,627,608	-		GFF3580	0.78	-1.9
3,627,609	+		GFF3580	0.79	+0.2
3,627,609	+		GFF3580	0.79	-2.1
3,627,611	-		GFF3580	0.79	+1.4
3,627,623	-		GFF3580	0.80	+0.8
3,627,623	-		GFF3580	0.80	+0.5
3,627,623	-		GFF3580	0.80	-0.8
3,627,623	-		GFF3580	0.80	+1.3
3,627,624	-		GFF3580	0.80	-1.8
3,627,642	+		GFF3580	0.82	-1.7
3,627,644	+		GFF3580	0.83	+0.4
3,627,650	+		GFF3580	0.83	-1.5
3,627,650	+		GFF3580	0.83	-1.4
3,627,650	-		GFF3580	0.83	-0.9
3,627,650	-		GFF3580	0.83	+0.6
3,627,650	-		GFF3580	0.83	-0.7
3,627,650	-		GFF3580	0.83	+1.0
3,627,651	-		GFF3580	0.84	-0.8
3,627,658	-		GFF3580	0.84	+0.7
3,627,658	-		GFF3580	0.84	-0.1
3,627,658	-		GFF3580	0.84	-0.5
3,627,658	-		GFF3580	0.84	-1.3
3,627,658	-		GFF3580	0.84	+0.1
3,627,658	-		GFF3580	0.84	+1.2
3,627,661	-		GFF3580	0.85	-2.1
3,627,670	+		GFF3580	0.86	-0.2
3,627,683	+		GFF3580	0.87	-0.1
3,627,684	-		GFF3580	0.88	-2.1
3,627,686	-		GFF3580	0.88	-0.7
3,627,707	+				-0.1
3,627,709	+				-0.4
3,627,717	-				-1.4
3,627,751	-				-1.3
3,627,761	-				-0.4
3,627,761	-				-1.1
3,627,806	-				-1.2
3,627,817	+				+0.7
3,627,817	+				+0.1
3,627,820	-				-0.2
3,627,825	-				+0.1
3,627,825	-				-0.0
3,627,830	-				-1.2
3,627,831	-				-1.3
3,627,833	-				-2.2
3,627,854	+				-0.5
3,627,859	+				+0.1
3,627,939	-				+0.6
3,628,050	+				-0.7
3,628,069	+				+2.0
3,628,069	+				-0.3
3,628,075	-				-2.1
3,628,077	-				-1.5
3,628,077	-				+0.7
3,628,098	+				+0.2
3,628,100	+				-1.4
3,628,103	+				-0.1
3,628,103	+				+1.0
3,628,113	+				+0.4
3,628,113	+				-0.7
3,628,121	-				-0.7
3,628,136	+				-0.8
3,628,146	+				-0.3
3,628,151	+				-0.5
3,628,151	+				-1.1
3,628,156	+				-0.3
3,628,159	-				+0.9
3,628,164	-				-1.8
3,628,188	-				-2.0
3,628,188	-				-1.7
3,628,189	-				-0.0
3,628,195	+				+0.6
3,628,200	+				-0.0
3,628,208	-				-1.4
3,628,236	+				+1.1
3,628,243	+				-0.5
3,628,244	+				-0.6
3,628,250	+				+0.2
3,628,259	-				-1.5
3,628,259	-				-1.4
3,628,261	+				-2.1
3,628,261	+				+0.4
3,628,268	+				-0.2
3,628,270	+				+0.3
3,628,285	+				+1.1
3,628,287	-				+0.3
3,628,291	+				+0.6
3,628,291	+				-0.4
3,628,291	+				-1.3
3,628,291	+				-0.1
3,628,291	+				+0.7
3,628,293	-				-0.6
3,628,293	-				-1.0
3,628,301	+				+0.9
3,628,309	+				-1.3
3,628,309	+				-0.7
3,628,309	+				-0.3
3,628,309	+				+0.1
3,628,312	+				-2.1
3,628,317	-		GFF3581	0.10	-1.4
3,628,387	+		GFF3581	0.18	+0.3
3,628,387	+		GFF3581	0.18	-1.1
3,628,387	+		GFF3581	0.18	+0.5
3,628,387	+		GFF3581	0.18	-0.2
3,628,387	+		GFF3581	0.18	+0.1
3,628,387	+		GFF3581	0.18	-0.3
3,628,387	+		GFF3581	0.18	+0.4
3,628,387	+		GFF3581	0.18	-1.3
3,628,387	+		GFF3581	0.18	-0.1
3,628,387	+		GFF3581	0.18	+0.1
3,628,387	+		GFF3581	0.18	-2.2
3,628,387	+		GFF3581	0.18	+0.9
3,628,395	-		GFF3581	0.19	-1.5
3,628,395	-		GFF3581	0.19	+0.1
3,628,397	+		GFF3581	0.19	+0.4
3,628,397	+		GFF3581	0.19	-0.8
3,628,405	-		GFF3581	0.20	+0.3
3,628,428	-		GFF3581	0.23	-1.5
3,628,451	-		GFF3581	0.25	-0.1
3,628,491	+		GFF3581	0.30	+0.5
3,628,501	+		GFF3581	0.31	+0.0
3,628,503	+		GFF3581	0.31	+0.0
3,628,509	+		GFF3581	0.32	+0.1
3,628,517	+		GFF3581	0.33	-0.4
3,628,537	+		GFF3581	0.35	-0.4
3,628,537	+		GFF3581	0.35	-0.6
3,628,537	+		GFF3581	0.35	+0.3
3,628,537	+		GFF3581	0.35	+0.3
3,628,537	+		GFF3581	0.35	-0.7
3,628,542	+		GFF3581	0.36	-1.2
3,628,545	-		GFF3581	0.36	-1.7
3,628,545	-		GFF3581	0.36	+0.8
3,628,547	+		GFF3581	0.36	-0.2
3,628,552	+		GFF3581	0.37	-0.6
3,628,552	+		GFF3581	0.37	+0.5
3,628,560	-		GFF3581	0.38	-1.6
3,628,571	+		GFF3581	0.39	+0.0
3,628,574	+		GFF3581	0.40	-0.6
3,628,574	+		GFF3581	0.40	-1.0
3,628,574	+		GFF3581	0.40	+0.1
3,628,582	-		GFF3581	0.40	-2.1
3,628,584	+		GFF3581	0.41	-0.9
3,628,604	+		GFF3581	0.43	+0.3
3,628,609	+		GFF3581	0.44	+1.4
3,628,612	-		GFF3581	0.44	-0.3
3,628,614	+		GFF3581	0.44	+1.1
3,628,614	+		GFF3581	0.44	-0.2
3,628,626	+		GFF3581	0.46	-0.4
3,628,626	+		GFF3581	0.46	-0.3
3,628,634	+		GFF3581	0.46	+0.5
3,628,634	-		GFF3581	0.46	-2.1
3,628,639	+		GFF3581	0.47	+0.6
3,628,639	+		GFF3581	0.47	-0.4
3,628,639	+		GFF3581	0.47	-1.1
3,628,639	+		GFF3581	0.47	+1.8
3,628,639	+		GFF3581	0.47	+1.2
3,628,639	+		GFF3581	0.47	-0.0
3,628,639	+		GFF3581	0.47	+1.3
3,628,642	-		GFF3581	0.47	-1.5
3,628,646	+		GFF3581	0.48	+0.5
3,628,646	+		GFF3581	0.48	-0.8
3,628,647	-		GFF3581	0.48	-2.5
3,628,659	+		GFF3581	0.49	-0.2
3,628,659	+		GFF3581	0.49	+1.1
3,628,659	+		GFF3581	0.49	-0.5
3,628,659	+		GFF3581	0.49	-0.1
3,628,659	+		GFF3581	0.49	-0.3
3,628,659	+		GFF3581	0.49	-0.4
3,628,659	+		GFF3581	0.49	+0.6
3,628,659	+		GFF3581	0.49	+1.0
3,628,659	+		GFF3581	0.49	-1.0
3,628,659	+		GFF3581	0.49	+0.7
3,628,659	+		GFF3581	0.49	-0.4
3,628,667	-		GFF3581	0.50	-2.3
3,628,667	-		GFF3581	0.50	-2.1
3,628,667	-		GFF3581	0.50	-1.4
3,628,671	+		GFF3581	0.51	-0.1
3,628,682	+		GFF3581	0.52	+0.6
3,628,684	+		GFF3581	0.52	-1.4
3,628,692	-		GFF3581	0.53	+1.0
3,628,693	+		GFF3581	0.53	+0.3
3,628,693	+		GFF3581	0.53	+1.1
3,628,693	+		GFF3581	0.53	-0.5
3,628,693	+		GFF3581	0.53	-1.8
3,628,693	+		GFF3581	0.53	-1.1
3,628,693	+		GFF3581	0.53	+0.2
3,628,693	+		GFF3581	0.53	+0.5
3,628,701	-		GFF3581	0.54	-0.3
3,628,703	+		GFF3581	0.54	-0.8
3,628,729	+		GFF3581	0.57	+0.5
3,628,739	+		GFF3581	0.59	-0.1
3,628,739	+		GFF3581	0.59	-0.1