Strain Fitness in Sphingobium sp. HT1-2 around GFF3525

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,567,389	-		GFF3524	0.46	-0.4
3,567,400	-		GFF3524	0.47	+0.0
3,567,400	-		GFF3524	0.47	+0.1
3,567,404	-		GFF3524	0.47	-0.4
3,567,404	-		GFF3524	0.47	-0.3
3,567,410	+		GFF3524	0.48	-0.1
3,567,410	+		GFF3524	0.48	+0.6
3,567,410	+		GFF3524	0.48	+0.5
3,567,410	+		GFF3524	0.48	-1.0
3,567,410	+		GFF3524	0.48	-0.1
3,567,410	+		GFF3524	0.48	-0.6
3,567,410	+		GFF3524	0.48	+1.4
3,567,410	+		GFF3524	0.48	+0.1
3,567,410	+		GFF3524	0.48	-0.4
3,567,410	+		GFF3524	0.48	-1.7
3,567,410	+		GFF3524	0.48	-0.6
3,567,410	+		GFF3524	0.48	-1.0
3,567,418	-		GFF3524	0.48	+0.1
3,567,418	-		GFF3524	0.48	+0.7
3,567,418	-		GFF3524	0.48	+0.3
3,567,418	-		GFF3524	0.48	+0.3
3,567,418	-		GFF3524	0.48	-1.3
3,567,418	-		GFF3524	0.48	-0.5
3,567,418	-		GFF3524	0.48	-0.1
3,567,427	+		GFF3524	0.49	+0.6
3,567,428	-		GFF3524	0.49	+1.1
3,567,438	-		GFF3524	0.49	-0.2
3,567,443	+		GFF3524	0.50	-0.6
3,567,443	+		GFF3524	0.50	+0.5
3,567,448	+		GFF3524	0.50	-0.5
3,567,458	+		GFF3524	0.50	+0.7
3,567,458	+		GFF3524	0.50	-0.7
3,567,458	+		GFF3524	0.50	-0.3
3,567,458	+		GFF3524	0.50	+0.7
3,567,458	+		GFF3524	0.50	+0.4
3,567,466	-		GFF3524	0.51	-0.3
3,567,476	+		GFF3524	0.52	-0.5
3,567,476	+		GFF3524	0.52	+0.0
3,567,484	-		GFF3524	0.52	-0.1
3,567,532	+		GFF3524	0.55	+1.4
3,567,629	-		GFF3524	0.60	-0.7
3,567,643	-		GFF3524	0.61	-0.8
3,567,647	-		GFF3524	0.61	+0.5
3,567,647	-		GFF3524	0.61	-0.0
3,567,647	-		GFF3524	0.61	-1.5
3,567,654	+		GFF3524	0.62	-2.2
3,567,662	-		GFF3524	0.62	-1.7
3,567,728	+		GFF3524	0.66	+0.7
3,567,728	+		GFF3524	0.66	-0.5
3,567,736	-		GFF3524	0.67	-0.6
3,567,772	-		GFF3524	0.69	-0.0
3,567,775	+		GFF3524	0.69	-0.5
3,567,775	+		GFF3524	0.69	+1.1
3,567,783	+		GFF3524	0.69	-2.2
3,567,783	+		GFF3524	0.69	-0.7
3,567,791	-		GFF3524	0.70	-0.7
3,567,807	-		GFF3524	0.71	+0.6
3,567,817	+		GFF3524	0.71	-2.0
3,567,830	+		GFF3524	0.72	-0.2
3,567,830	+		GFF3524	0.72	-2.9
3,567,830	+		GFF3524	0.72	+0.2
3,567,830	+		GFF3524	0.72	-1.0
3,567,830	-		GFF3524	0.72	+0.1
3,567,830	-		GFF3524	0.72	+0.3
3,567,830	-		GFF3524	0.72	+0.5
3,567,835	+		GFF3524	0.72	-2.6
3,567,835	+		GFF3524	0.72	+0.1
3,567,835	+		GFF3524	0.72	-1.1
3,567,835	+		GFF3524	0.72	-0.9
3,567,842	+		GFF3524	0.73	-0.9
3,567,842	+		GFF3524	0.73	+0.1
3,567,843	-		GFF3524	0.73	-1.5
3,567,843	-		GFF3524	0.73	-1.4
3,567,843	-		GFF3524	0.73	+0.2
3,567,843	-		GFF3524	0.73	-0.7
3,567,850	-		GFF3524	0.73	+0.0
3,567,850	-		GFF3524	0.73	-0.3
3,567,850	-		GFF3524	0.73	-0.0
3,567,850	-		GFF3524	0.73	-0.0
3,567,850	-		GFF3524	0.73	-0.7
3,567,850	-		GFF3524	0.73	-0.3
3,567,850	-		GFF3524	0.73	-0.4
3,567,852	-		GFF3524	0.73	-0.6
3,567,869	+		GFF3524	0.74	+0.2
3,567,878	+		GFF3524	0.75	-1.0
3,567,908	+		GFF3524	0.77	-0.6
3,567,908	+		GFF3524	0.77	-0.2
3,567,908	+		GFF3524	0.77	+0.3
3,567,908	+		GFF3524	0.77	-0.2
3,567,908	+		GFF3524	0.77	+0.2
3,567,913	+		GFF3524	0.77	-0.2
3,567,916	-		GFF3524	0.77	-0.4
3,567,916	-		GFF3524	0.77	-0.9
3,567,916	-		GFF3524	0.77	+0.4
3,567,916	-		GFF3524	0.77	+0.5
3,567,918	+		GFF3524	0.77	+0.0
3,567,918	+		GFF3524	0.77	-0.1
3,567,926	-		GFF3524	0.78	-0.8
3,567,926	-		GFF3524	0.78	+0.1
3,567,928	-		GFF3524	0.78	-1.8
3,567,939	+		GFF3524	0.78	-3.1
3,567,939	+		GFF3524	0.78	+0.6
3,567,939	+		GFF3524	0.78	-0.4
3,567,939	+		GFF3524	0.78	-0.8
3,567,942	-		GFF3524	0.79	-0.6
3,567,968	+		GFF3524	0.80	-0.8
3,567,968	+		GFF3524	0.80	-2.8
3,567,968	+		GFF3524	0.80	-0.9
3,567,968	+		GFF3524	0.80	+0.4
3,567,968	+		GFF3524	0.80	-0.4
3,567,968	+		GFF3524	0.80	-0.8
3,567,968	+		GFF3524	0.80	+1.1
3,567,968	+		GFF3524	0.80	+0.2
3,567,968	+		GFF3524	0.80	-0.9
3,567,973	+		GFF3524	0.80	+0.3
3,567,973	+		GFF3524	0.80	-1.3
3,567,976	+		GFF3524	0.81	+0.9
3,567,976	-		GFF3524	0.81	-0.5
3,567,976	-		GFF3524	0.81	-0.9
3,567,976	-		GFF3524	0.81	+0.1
3,567,976	-		GFF3524	0.81	-0.1
3,567,976	-		GFF3524	0.81	-0.0
3,567,978	+		GFF3524	0.81	-0.0
3,567,981	+		GFF3524	0.81	-1.8
3,567,981	+		GFF3524	0.81	-1.0
3,567,981	-		GFF3524	0.81	+1.9
3,567,981	-		GFF3524	0.81	+1.6
3,567,986	-		GFF3524	0.81	-0.9
3,567,989	-		GFF3524	0.81	-1.1
3,567,989	-		GFF3524	0.81	-1.5
3,567,991	-		GFF3524	0.82	+0.0
3,567,991	-		GFF3524	0.82	-0.9
3,568,000	+		GFF3524	0.82	-0.0
3,568,008	+		GFF3524	0.82	-1.3
3,568,008	+		GFF3524	0.82	-0.3
3,568,036	-		GFF3524	0.84	+0.5
3,568,070	-		GFF3524	0.86	-1.8
3,568,111	+		GFF3524	0.88	-0.6
3,568,166	-				-0.7
3,568,169	+				+0.3
3,568,177	-				+0.7
3,568,180	+				-0.9
3,568,195	+				+0.9
3,568,223	-				+0.4
3,568,232	-				-0.3
3,568,238	+				-0.3
3,568,238	+				+0.1
3,568,239	-				-0.4
3,568,244	-				-0.5
3,568,257	+				+0.5
3,568,266	-				-0.2
3,568,271	-				+0.2
3,568,306	-				+0.7
3,568,316	-				+1.1
3,568,344	+				-3.4
3,568,359	-				+0.9
3,568,366	+				+0.9
3,568,374	-				-0.1
3,568,375	-				+1.3
3,568,375	-				-1.5
3,568,376	+				-2.0
3,568,381	-				-1.8
3,568,383	+				-0.4
3,568,383	+				+0.3
3,568,384	-				-1.5
3,568,391	-				-0.7
3,568,391	-				+0.2
3,568,391	-				+0.2
3,568,391	-				-0.1
3,568,391	-				-0.4
3,568,391	-				-0.0
3,568,397	-				+0.6
3,568,404	-				+0.5
3,568,412	-				-0.1
3,568,416	+				+0.4
3,568,431	-		GFF3525	0.11	+0.5
3,568,443	+		GFF3525	0.14	-0.1
3,568,451	-		GFF3525	0.15	-0.9
3,568,473	-		GFF3525	0.19	+0.0
3,568,476	-		GFF3525	0.20	+0.1
3,568,476	-		GFF3525	0.20	-0.0
3,568,562	+		GFF3525	0.37	-0.9
3,568,568	+		GFF3525	0.38	+0.2
3,568,568	+		GFF3525	0.38	-0.8
3,568,581	+		GFF3525	0.41	-1.1
3,568,582	+		GFF3525	0.41	+0.5
3,568,587	+		GFF3525	0.42	+1.1
3,568,587	+		GFF3525	0.42	+0.6
3,568,587	+		GFF3525	0.42	-0.9
3,568,587	+		GFF3525	0.42	+0.6
3,568,587	+		GFF3525	0.42	+0.3
3,568,587	+		GFF3525	0.42	+0.1
3,568,587	+		GFF3525	0.42	-0.4
3,568,587	+		GFF3525	0.42	-1.0
3,568,591	+		GFF3525	0.43	+0.4
3,568,595	+		GFF3525	0.43	+1.5
3,568,595	-		GFF3525	0.43	-0.7
3,568,595	-		GFF3525	0.43	-0.0
3,568,595	-		GFF3525	0.43	-0.2
3,568,595	-		GFF3525	0.43	+0.5
3,568,595	-		GFF3525	0.43	-0.4
3,568,595	-		GFF3525	0.43	+0.1
3,568,595	-		GFF3525	0.43	-0.0
3,568,595	-		GFF3525	0.43	+0.0
3,568,595	-		GFF3525	0.43	+0.8
3,568,595	-		GFF3525	0.43	+0.2
3,568,600	-		GFF3525	0.44	-0.5
3,568,604	-		GFF3525	0.45	-0.6
3,568,615	-		GFF3525	0.47	-2.7
3,568,651	+		GFF3525	0.54	+1.4
3,568,654	-		GFF3525	0.55	+0.4
3,568,659	+		GFF3525	0.56	-1.0
3,568,659	-		GFF3525	0.56	+1.6
3,568,659	-		GFF3525	0.56	-1.2
3,568,666	-		GFF3525	0.57	+0.2
3,568,677	+		GFF3525	0.59	-1.5
3,568,682	+		GFF3525	0.60	-0.4
3,568,684	-		GFF3525	0.61	-0.1
3,568,685	-		GFF3525	0.61	+0.9
3,568,690	-		GFF3525	0.62	-0.4
3,568,695	-		GFF3525	0.63	+1.8
3,568,718	+		GFF3525	0.67	+0.3
3,568,731	+		GFF3525	0.70	-0.6
3,568,739	-		GFF3525	0.72	-0.1
3,568,742	+		GFF3525	0.72	+1.3
3,568,767	+		GFF3525	0.77	+0.9
3,568,768	-		GFF3525	0.77	-0.7
3,568,800	+		GFF3525	0.84	+0.1
3,568,811	+		GFF3525	0.86	+0.3
3,568,825	+		GFF3525	0.88	+1.0
3,568,850	+				-0.6
3,568,850	+				-3.0
3,568,858	-				+0.1
3,568,858	-				+0.4
3,568,865	+				-0.3
3,568,873	+				-0.6
3,568,924	-				-0.9
3,568,966	+				-1.1
3,568,967	-				+0.6
3,568,974	-				+0.6
3,568,975	+				-1.4
3,568,975	+				-1.8
3,568,983	-				+0.6
3,568,983	-				+1.0
3,568,983	-				+0.4
3,568,992	+				-1.1
3,569,000	-				-1.2
3,569,025	-				+1.4
3,569,038	-				-1.7
3,569,041	-				-1.9
3,569,041	-				-0.5
3,569,041	-				+0.8
3,569,070	+				+0.8
3,569,083	-				+0.3
3,569,087	+				+0.6
3,569,087	+				-0.6
3,569,095	-				-0.0
3,569,127	-				-0.5
3,569,145	+				-0.0
3,569,145	+				-0.2
3,569,145	+				-1.0
3,569,145	+				-0.0
3,569,150	+				-0.9
3,569,153	-				-0.2
3,569,153	-				-0.7
3,569,165	+				-0.3
3,569,165	+				-2.4
3,569,173	-				+0.7
3,569,173	-				-0.8
3,569,173	-				+0.4
3,569,173	-				-2.1
3,569,174	+				-0.7
3,569,191	-				+1.1
3,569,198	+				+0.7
3,569,198	+				+0.8
3,569,198	+				-0.5
3,569,206	-				+1.0
3,569,206	-				+0.4
3,569,206	-				+0.4
3,569,206	-				-0.7
3,569,206	-				+0.3
3,569,206	-				-1.2
3,569,206	-				-0.1
3,569,206	-				-2.0
3,569,206	-				-0.5
3,569,206	-				-0.3
3,569,206	-				-1.5
3,569,238	-		GFF3526	0.10	+0.7
3,569,242	-		GFF3526	0.10	+0.3
3,569,242	-		GFF3526	0.10	-1.5
3,569,242	-		GFF3526	0.10	+0.1
3,569,254	+		GFF3526	0.11	+0.6
3,569,267	+		GFF3526	0.11	+0.2
3,569,275	-		GFF3526	0.11	+1.3
3,569,297	-		GFF3526	0.12	+1.5
3,569,305	-		GFF3526	0.12	-0.7
3,569,311	+		GFF3526	0.13	+0.7
3,569,318	-		GFF3526	0.13	-1.6
3,569,376	+		GFF3526	0.15	+0.3
3,569,387	+		GFF3526	0.16	-1.3
3,569,392	+		GFF3526	0.16	+0.1
3,569,394	-		GFF3526	0.16	-1.9
3,569,407	-		GFF3526	0.16	-1.3
3,569,409	+		GFF3526	0.16	-0.3
3,569,413	-		GFF3526	0.16	+0.5
3,569,417	-		GFF3526	0.17	+0.6
3,569,432	+		GFF3526	0.17	+0.4
3,569,448	-		GFF3526	0.18	+0.1
3,569,463	+		GFF3526	0.18	-0.6
3,569,463	+		GFF3526	0.18	-0.9
3,569,463	+		GFF3526	0.18	-0.3
3,569,471	-		GFF3526	0.19	-2.0
3,569,471	-		GFF3526	0.19	-0.2
3,569,478	-		GFF3526	0.19	+0.5
3,569,517	-		GFF3526	0.20	+0.6
3,569,519	+		GFF3526	0.20	-0.3
3,569,519	+		GFF3526	0.20	+0.9
3,569,520	-		GFF3526	0.20	-2.1
3,569,520	-		GFF3526	0.20	-1.6
3,569,524	+		GFF3526	0.21	+0.2
3,569,524	+		GFF3526	0.21	-2.1
3,569,524	+		GFF3526	0.21	-0.8
3,569,532	-		GFF3526	0.21	-0.8
3,569,550	+		GFF3526	0.22	+0.1
3,569,555	-		GFF3526	0.22	-0.1
3,569,563	-		GFF3526	0.22	+0.8
3,569,581	-		GFF3526	0.23	-0.2
3,569,582	-		GFF3526	0.23	+0.5
3,569,610	-		GFF3526	0.24	+0.0
3,569,615	-		GFF3526	0.24	+0.8
3,569,619	-		GFF3526	0.24	+0.6
3,569,621	+		GFF3526	0.24	-1.7
3,569,628	+		GFF3526	0.24	+0.4
3,569,629	-		GFF3526	0.24	-0.5
3,569,636	-		GFF3526	0.25	-0.5
3,569,648	+		GFF3526	0.25	-2.6
3,569,654	-		GFF3526	0.25	-0.3
3,569,668	+		GFF3526	0.26	+0.2
3,569,668	+		GFF3526	0.26	-1.8
3,569,676	-		GFF3526	0.26	+1.3
3,569,685	+		GFF3526	0.27	-0.1
3,569,685	+		GFF3526	0.27	-0.9
3,569,686	-		GFF3526	0.27	+1.2
3,569,687	+		GFF3526	0.27	+0.5
3,569,692	+		GFF3526	0.27	-0.3
3,569,692	+		GFF3526	0.27	-1.0
3,569,693	-		GFF3526	0.27	-0.5
3,569,693	-		GFF3526	0.27	+1.0
3,569,695	-		GFF3526	0.27	+0.3
3,569,698	+		GFF3526	0.27	-0.2
3,569,698	+		GFF3526	0.27	-0.6
3,569,698	+		GFF3526	0.27	-0.3
3,569,698	+		GFF3526	0.27	-1.7
3,569,698	+		GFF3526	0.27	-0.8
3,569,698	+		GFF3526	0.27	-0.4
3,569,698	+		GFF3526	0.27	-0.6
3,569,700	-		GFF3526	0.27	-0.8
3,569,706	-		GFF3526	0.27	+0.3
3,569,706	-		GFF3526	0.27	-0.6
3,569,706	-		GFF3526	0.27	+0.5
3,569,706	-		GFF3526	0.27	-0.5
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