Strain Fitness in Sphingobium sp. HT1-2 around GFF3516

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,552,768	-				+1.0
3,552,768	-				-1.3
3,552,770	+				+0.2
3,552,770	+				-1.8
3,552,778	-				+0.1
3,552,779	+				+0.8
3,552,791	+				-1.3
3,552,791	+				-1.4
3,552,801	-				-0.2
3,552,801	-				+0.4
3,552,804	-				-0.3
3,552,812	-				+0.8
3,552,850	-		GFF3514	0.17	-2.5
3,552,859	+		GFF3514	0.19	+1.3
3,552,862	-		GFF3514	0.19	-0.5
3,552,870	+		GFF3514	0.21	-1.7
3,552,870	+		GFF3514	0.21	-0.6
3,552,870	+		GFF3514	0.21	-0.8
3,552,878	+		GFF3514	0.23	+0.0
3,552,883	+		GFF3514	0.24	-1.5
3,552,887	-		GFF3514	0.25	-0.0
3,552,891	-		GFF3514	0.25	+0.2
3,552,907	+		GFF3514	0.29	+0.5
3,552,915	-		GFF3514	0.31	+0.1
3,552,924	-		GFF3514	0.32	-0.8
3,552,925	-		GFF3514	0.33	-1.8
3,552,925	-		GFF3514	0.33	-0.9
3,552,955	+		GFF3514	0.39	+0.4
3,552,956	+		GFF3514	0.39	+0.8
3,552,963	-		GFF3514	0.41	-1.8
3,552,963	-		GFF3514	0.41	-0.5
3,552,970	-		GFF3514	0.42	-0.1
3,552,979	-		GFF3514	0.44	-1.6
3,552,997	-		GFF3514	0.48	+0.7
3,553,007	-		GFF3514	0.50	-0.4
3,553,009	+		GFF3514	0.51	-0.4
3,553,014	-		GFF3514	0.52	-0.8
3,553,032	+		GFF3514	0.56	+0.4
3,553,032	+		GFF3514	0.56	+0.1
3,553,032	+		GFF3514	0.56	+0.3
3,553,032	+		GFF3514	0.56	+0.8
3,553,040	-		GFF3514	0.57	+0.2
3,553,040	-		GFF3514	0.57	-1.4
3,553,040	-		GFF3514	0.57	-1.0
3,553,040	-		GFF3514	0.57	-1.8
3,553,040	-		GFF3514	0.57	+1.1
3,553,040	-		GFF3514	0.57	-0.3
3,553,040	-		GFF3514	0.57	-1.6
3,553,040	-		GFF3514	0.57	-0.0
3,553,040	-		GFF3514	0.57	-0.1
3,553,040	-		GFF3514	0.57	-0.5
3,553,040	-		GFF3514	0.57	-0.7
3,553,040	-		GFF3514	0.57	-2.2
3,553,065	+		GFF3514	0.63	+0.9
3,553,065	+		GFF3514	0.63	-1.5
3,553,078	-		GFF3514	0.65	+0.3
3,553,097	+		GFF3514	0.69	+0.9
3,553,099	+		GFF3514	0.70	-0.6
3,553,107	+		GFF3514	0.72	-0.1
3,553,107	+		GFF3514	0.72	-0.3
3,553,107	+		GFF3514	0.72	-0.3
3,553,115	-		GFF3514	0.73	+0.4
3,553,115	-		GFF3514	0.73	+0.1
3,553,122	-		GFF3514	0.75	-0.2
3,553,125	-		GFF3514	0.75	-0.6
3,553,132	+		GFF3514	0.77	-0.4
3,553,132	+		GFF3514	0.77	+0.5
3,553,132	+		GFF3514	0.77	+0.9
3,553,140	-		GFF3514	0.79	-1.7
3,553,140	-		GFF3514	0.79	+0.6
3,553,174	+		GFF3514	0.86	-1.7
3,553,182	-		GFF3514	0.88	-0.8
3,553,182	-		GFF3514	0.88	-0.7
3,553,198	+				+0.6
3,553,221	-				-0.5
3,553,242	+				-0.0
3,553,242	+				-0.6
3,553,243	+				+0.2
3,553,251	+				-1.6
3,553,266	+				-1.8
3,553,269	-				-0.3
3,553,269	-				+0.5
3,553,269	-				-0.7
3,553,269	-				-0.0
3,553,271	+				-2.4
3,553,271	+				-0.4
3,553,274	-		GFF3515	0.10	-1.8
3,553,274	-		GFF3515	0.10	+0.8
3,553,274	-		GFF3515	0.10	-0.8
3,553,274	-		GFF3515	0.10	+0.0
3,553,274	-		GFF3515	0.10	-0.3
3,553,274	-		GFF3515	0.10	-0.5
3,553,274	-		GFF3515	0.10	+0.2
3,553,274	-		GFF3515	0.10	-1.1
3,553,279	-		GFF3515	0.12	+0.1
3,553,279	-		GFF3515	0.12	+0.4
3,553,279	-		GFF3515	0.12	-2.0
3,553,297	+		GFF3515	0.16	-1.6
3,553,300	+		GFF3515	0.17	-0.4
3,553,300	+		GFF3515	0.17	+0.2
3,553,300	+		GFF3515	0.17	-2.3
3,553,303	-		GFF3515	0.17	-1.5
3,553,308	-		GFF3515	0.19	-0.2
3,553,308	-		GFF3515	0.19	+0.7
3,553,308	-		GFF3515	0.19	+0.4
3,553,308	-		GFF3515	0.19	-0.8
3,553,308	-		GFF3515	0.19	+0.9
3,553,325	-		GFF3515	0.23	-1.0
3,553,325	-		GFF3515	0.23	+0.2
3,553,328	-		GFF3515	0.24	-1.9
3,553,335	-		GFF3515	0.25	-1.5
3,553,335	-		GFF3515	0.25	-0.3
3,553,351	+		GFF3515	0.29	+0.2
3,553,351	+		GFF3515	0.29	-0.7
3,553,359	-		GFF3515	0.31	-0.0
3,553,359	-		GFF3515	0.31	-0.8
3,553,365	+		GFF3515	0.33	+0.4
3,553,365	+		GFF3515	0.33	-1.3
3,553,369	+		GFF3515	0.34	-1.2
3,553,369	-		GFF3515	0.34	-0.5
3,553,406	+		GFF3515	0.43	+0.9
3,553,406	+		GFF3515	0.43	-0.1
3,553,424	+		GFF3515	0.47	+0.4
3,553,437	-		GFF3515	0.50	-0.9
3,553,460	+		GFF3515	0.56	+0.2
3,553,460	+		GFF3515	0.56	-0.0
3,553,461	-		GFF3515	0.56	-0.1
3,553,468	-		GFF3515	0.58	-0.2
3,553,473	+		GFF3515	0.59	-1.3
3,553,480	+		GFF3515	0.61	-0.8
3,553,480	+		GFF3515	0.61	-1.0
3,553,480	-		GFF3515	0.61	-0.3
3,553,481	+		GFF3515	0.61	-1.0
3,553,488	-		GFF3515	0.63	-1.3
3,553,589	+		GFF3515	0.88	-0.7
3,553,603	-				-0.9
3,553,613	-				+0.1
3,553,620	+				-0.6
3,553,635	+				-1.0
3,553,635	+				-0.2
3,553,642	+				+0.1
3,553,643	-				-1.0
3,553,643	-				-0.1
3,553,643	-				+1.2
3,553,643	-				-0.1
3,553,650	-				+0.0
3,553,651	+				+0.3
3,553,651	+				+0.3
3,553,651	+				+0.6
3,553,651	+				-1.1
3,553,651	+				-2.5
3,553,651	+				-0.9
3,553,651	+				+0.5
3,553,653	-				+1.3
3,553,658	+				+0.5
3,553,659	-				+0.8
3,553,659	-				-0.9
3,553,659	-				-0.2
3,553,659	-				-1.9
3,553,659	-				-0.3
3,553,659	-				+1.0
3,553,659	-				+0.9
3,553,659	-				+0.9
3,553,659	-				-0.3
3,553,659	-				+0.7
3,553,689	-				-0.7
3,553,696	+				-1.2
3,553,704	-				-0.7
3,553,704	-				-0.7
3,553,704	-				-2.4
3,553,704	-				+0.5
3,553,706	+				-0.3
3,553,706	+				+0.3
3,553,714	-				-1.5
3,553,714	-				-0.4
3,553,719	+				+0.7
3,553,727	+				-1.5
3,553,727	+				+0.5
3,553,727	-				-1.9
3,553,735	-				+1.7
3,553,735	-				-2.1
3,553,735	-				+0.8
3,553,735	-				-0.4
3,553,735	-				-0.9
3,553,735	-				+0.2
3,553,774	+				-2.3
3,553,774	+				-0.7
3,553,856	-		GFF3516	0.17	-1.8
3,553,864	+		GFF3516	0.19	+1.1
3,553,864	+		GFF3516	0.19	+0.6
3,553,864	+		GFF3516	0.19	-1.0
3,553,872	-		GFF3516	0.20	+0.1
3,553,872	-		GFF3516	0.20	-0.4
3,553,872	-		GFF3516	0.20	-1.0
3,553,872	-		GFF3516	0.20	+1.6
3,553,872	-		GFF3516	0.20	-0.2
3,553,876	-		GFF3516	0.21	+0.2
3,553,893	-		GFF3516	0.24	-0.1
3,553,993	+		GFF3516	0.42	+0.2
3,553,993	+		GFF3516	0.42	-1.5
3,554,006	-		GFF3516	0.45	-0.7
3,554,015	-		GFF3516	0.46	-2.0
3,554,015	-		GFF3516	0.46	-1.3
3,554,047	+		GFF3516	0.52	-0.7
3,554,053	+		GFF3516	0.53	+1.1
3,554,053	+		GFF3516	0.53	-1.9
3,554,053	+		GFF3516	0.53	-0.0
3,554,053	+		GFF3516	0.53	-0.2
3,554,058	+		GFF3516	0.54	+0.6
3,554,061	-		GFF3516	0.55	-0.4
3,554,061	-		GFF3516	0.55	+0.0
3,554,080	-		GFF3516	0.58	-0.7
3,554,100	+		GFF3516	0.62	-1.4
3,554,108	-		GFF3516	0.63	-0.8
3,554,113	+		GFF3516	0.64	-0.2
3,554,149	+		GFF3516	0.71	+0.1
3,554,157	-		GFF3516	0.72	-0.3
3,554,157	-		GFF3516	0.72	-1.2
3,554,159	+		GFF3516	0.72	+1.1
3,554,159	+		GFF3516	0.72	-0.9
3,554,159	+		GFF3516	0.72	-0.1
3,554,161	+		GFF3516	0.73	-0.1
3,554,167	-		GFF3516	0.74	-0.1
3,554,177	-		GFF3516	0.76	-0.3
3,554,184	+		GFF3516	0.77	-0.6
3,554,192	-		GFF3516	0.79	-0.2
3,554,193	-		GFF3516	0.79	-0.3
3,554,197	-		GFF3516	0.79	-0.7
3,554,213	+		GFF3516	0.82	-0.1
3,554,213	+		GFF3516	0.82	-1.6
3,554,221	-		GFF3516	0.84	-0.8
3,554,221	-		GFF3516	0.84	+0.7
3,554,223	+		GFF3516	0.84	-0.8
3,554,240	-		GFF3516	0.87	-1.1
3,554,265	+				+0.1
3,554,289	-				+1.3
3,554,293	+				-1.3
3,554,326	-				-0.5
3,554,326	-				-0.5
3,554,326	-				-1.5
3,554,337	-				+0.1
3,554,337	-				-1.1
3,554,338	-				+1.1
3,554,362	+				-0.4
3,554,379	-				+0.4
3,554,424	-				+1.3
3,554,440	+				-2.2
3,554,441	+				+1.7
3,554,456	-		GFF3517	0.11	+0.5
3,554,493	+		GFF3517	0.14	+0.7
3,554,503	+		GFF3517	0.15	-0.9
3,554,524	+		GFF3517	0.17	-0.6
3,554,524	+		GFF3517	0.17	-0.7
3,554,532	-		GFF3517	0.17	-0.5
3,554,562	-		GFF3517	0.20	+1.1
3,554,562	-		GFF3517	0.20	-2.3
3,554,581	+		GFF3517	0.21	-0.2
3,554,591	+		GFF3517	0.22	-0.7
3,554,599	-		GFF3517	0.23	-0.6
3,554,613	-		GFF3517	0.24	-0.3
3,554,622	+		GFF3517	0.25	-0.4
3,554,622	+		GFF3517	0.25	+0.0
3,554,630	-		GFF3517	0.25	+0.1
3,554,630	-		GFF3517	0.25	-1.0
3,554,630	-		GFF3517	0.25	+0.2
3,554,637	+		GFF3517	0.26	-1.5
3,554,639	+		GFF3517	0.26	-1.1
3,554,639	+		GFF3517	0.26	-0.8
3,554,639	+		GFF3517	0.26	-1.6
3,554,639	+		GFF3517	0.26	+1.2
3,554,639	+		GFF3517	0.26	+0.2
3,554,640	-		GFF3517	0.26	+0.7
3,554,645	-		GFF3517	0.27	-0.7
3,554,647	-		GFF3517	0.27	+0.8
3,554,647	-		GFF3517	0.27	-0.4
3,554,647	-		GFF3517	0.27	-1.4
3,554,657	-		GFF3517	0.28	+1.4
3,554,658	-		GFF3517	0.28	-0.7
3,554,670	+		GFF3517	0.29	-0.9
3,554,670	+		GFF3517	0.29	+0.7
3,554,702	+		GFF3517	0.31	-0.9
3,554,702	+		GFF3517	0.31	+0.5
3,554,702	+		GFF3517	0.31	-1.1
3,554,702	+		GFF3517	0.31	-0.0
3,554,702	+		GFF3517	0.31	+0.3
3,554,702	+		GFF3517	0.31	-0.6
3,554,702	+		GFF3517	0.31	+0.7
3,554,703	+		GFF3517	0.31	-0.9
3,554,710	-		GFF3517	0.32	-0.0
3,554,710	-		GFF3517	0.32	-0.7
3,554,710	-		GFF3517	0.32	-2.0
3,554,710	-		GFF3517	0.32	-0.2
3,554,710	-		GFF3517	0.32	-0.4
3,554,710	-		GFF3517	0.32	-0.7
3,554,710	-		GFF3517	0.32	-1.2
3,554,710	-		GFF3517	0.32	+0.2
3,554,710	-		GFF3517	0.32	+0.5
3,554,720	-		GFF3517	0.33	-0.2
3,554,738	-		GFF3517	0.34	-1.7
3,554,738	-		GFF3517	0.34	+0.3
3,554,738	-		GFF3517	0.34	-1.3
3,554,745	-		GFF3517	0.35	+0.6
3,554,753	+		GFF3517	0.35	-0.3
3,554,753	+		GFF3517	0.35	-0.0
3,554,753	+		GFF3517	0.35	-0.6
3,554,753	+		GFF3517	0.35	-0.9
3,554,757	+		GFF3517	0.36	+0.4
3,554,761	-		GFF3517	0.36	-2.3
3,554,761	-		GFF3517	0.36	+0.7
3,554,790	-		GFF3517	0.39	+1.4
3,554,850	-		GFF3517	0.43	-0.7
3,554,871	-		GFF3517	0.45	+0.5
3,554,889	+		GFF3517	0.47	+1.4
3,554,900	+		GFF3517	0.48	-2.2
3,554,909	+		GFF3517	0.48	-0.5
3,554,909	+		GFF3517	0.48	+0.0
3,554,917	-		GFF3517	0.49	-0.6
3,554,930	+		GFF3517	0.50	+1.6
3,554,937	+		GFF3517	0.51	-0.3
3,554,937	+		GFF3517	0.51	+0.6
3,554,937	+		GFF3517	0.51	-0.8
3,554,937	-		GFF3517	0.51	+0.9
3,554,953	-		GFF3517	0.52	-0.7
3,554,955	+		GFF3517	0.52	+0.1
3,554,963	-		GFF3517	0.53	-0.4
3,554,963	-		GFF3517	0.53	+1.1
3,554,963	-		GFF3517	0.53	+0.0
3,554,965	+		GFF3517	0.53	-1.7
3,554,973	-		GFF3517	0.54	-0.2
3,554,975	+		GFF3517	0.54	+0.1
3,554,988	+		GFF3517	0.55	-1.2
3,554,988	+		GFF3517	0.55	-1.3
3,554,990	+		GFF3517	0.55	-1.4
3,554,996	-		GFF3517	0.55	+0.9
3,554,996	-		GFF3517	0.55	+1.0
3,555,006	-		GFF3517	0.56	-1.5
3,555,035	+		GFF3517	0.59	-1.2
3,555,044	-		GFF3517	0.59	-0.2
3,555,075	+		GFF3517	0.62	-0.1
3,555,084	-		GFF3517	0.63	-0.5
3,555,084	-		GFF3517	0.63	-1.8
3,555,106	-		GFF3517	0.64	+0.4
3,555,126	+		GFF3517	0.66	-3.4
3,555,126	+		GFF3517	0.66	+0.1
3,555,138	+		GFF3517	0.67	+0.9
3,555,156	-		GFF3517	0.69	-1.6
3,555,169	-		GFF3517	0.70	-1.1
3,555,198	-		GFF3517	0.72	+0.0
3,555,208	+		GFF3517	0.73	-0.3
3,555,226	-		GFF3517	0.74	+0.2
3,555,244	+		GFF3517	0.76	-0.9
3,555,244	+		GFF3517	0.76	-0.6
3,555,262	+		GFF3517	0.77	-0.7
3,555,275	-		GFF3517	0.78	-1.0
3,555,275	-		GFF3517	0.78	-0.4
3,555,283	+		GFF3517	0.79	+1.6
3,555,283	+		GFF3517	0.79	-0.8
3,555,291	+		GFF3517	0.80	-0.4
3,555,304	-		GFF3517	0.81	+0.4
3,555,307	+		GFF3517	0.81	-1.2