Strain Fitness in Sphingobium sp. HT1-2 around GFF3478

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,516,746	+		GFF3476	0.87	+0.1
3,516,746	+		GFF3476	0.87	-0.3
3,516,746	+		GFF3476	0.87	-0.2
3,516,746	+		GFF3476	0.87	+0.0
3,516,754	-		GFF3476	0.87	-1.0
3,516,754	-		GFF3476	0.87	+0.3
3,516,808	-		GFF3476	0.89	+0.2
3,516,837	+		GFF3476	0.90	-1.7
3,516,853	-				+1.5
3,516,855	-				-1.4
3,516,860	+				+0.4
3,516,862	+				-2.0
3,516,862	+				+0.4
3,516,862	+				-0.3
3,516,862	+				-2.1
3,516,868	-				-0.1
3,516,870	-				-0.7
3,516,870	-				-0.2
3,516,870	-				+0.0
3,516,870	-				+1.1
3,516,870	-				+0.0
3,516,870	-				-0.8
3,516,870	-				+0.3
3,516,895	+				-1.3
3,516,918	+				-1.3
3,516,918	+				+0.7
3,516,923	+				-0.3
3,516,923	+				-0.7
3,516,926	-				-1.1
3,516,928	+				+0.3
3,516,931	-				+0.1
3,516,931	-				-1.2
3,516,931	-				-0.6
3,516,976	-				+0.0
3,516,978	-				+0.5
3,516,985	-				-1.5
3,516,985	-				-0.8
3,516,990	-				+0.3
3,516,992	+				-1.0
3,517,000	-				+0.5
3,517,002	+				-0.8
3,517,009	+				-0.1
3,517,010	-				-1.5
3,517,010	-				-0.4
3,517,010	-				+0.0
3,517,064	+				-1.5
3,517,078	+				+0.1
3,517,082	+				+0.9
3,517,082	+				-0.5
3,517,082	+				-0.1
3,517,082	+				-1.0
3,517,082	+				+0.4
3,517,082	+				-1.9
3,517,082	+				-0.9
3,517,082	+				-1.5
3,517,090	-				-0.3
3,517,090	-				-0.1
3,517,090	-				-1.1
3,517,090	-				-1.9
3,517,090	-				-0.6
3,517,090	-				-2.7
3,517,090	-				-0.2
3,517,092	+				+0.0
3,517,100	-				+0.5
3,517,104	+				-0.9
3,517,105	-				-0.4
3,517,109	-				+0.1
3,517,117	-				-1.7
3,517,117	-				-0.1
3,517,117	-				-0.4
3,517,167	-				+0.4
3,517,181	-				-1.1
3,517,181	-				-0.3
3,517,195	+				-0.0
3,517,197	+				-0.3
3,517,197	+				+0.5
3,517,197	+				-1.2
3,517,205	-				-1.0
3,517,223	+				-1.8
3,517,231	-				+0.4
3,517,236	+				+0.0
3,517,251	+				-0.3
3,517,265	-				+0.5
3,517,280	+				-1.4
3,517,280	+				-1.3
3,517,280	+				-0.3
3,517,280	+				+0.2
3,517,288	-				-2.0
3,517,343	+				-0.6
3,517,343	+				+0.0
3,517,343	+				-0.5
3,517,351	-				-0.8
3,517,351	-				-0.7
3,517,351	-				-0.0
3,517,361	-				+1.3
3,517,413	+		GFF3477	0.22	-0.3
3,517,413	+		GFF3477	0.22	-1.5
3,517,413	+		GFF3477	0.22	+0.1
3,517,413	+		GFF3477	0.22	+1.4
3,517,413	+		GFF3477	0.22	+0.6
3,517,413	+		GFF3477	0.22	+0.5
3,517,413	+		GFF3477	0.22	-0.8
3,517,413	+		GFF3477	0.22	-0.5
3,517,413	+		GFF3477	0.22	-1.2
3,517,413	+		GFF3477	0.22	-0.4
3,517,421	-		GFF3477	0.24	-1.5
3,517,421	-		GFF3477	0.24	+0.2
3,517,421	-		GFF3477	0.24	+0.2
3,517,421	-		GFF3477	0.24	+0.2
3,517,421	-		GFF3477	0.24	-0.2
3,517,421	-		GFF3477	0.24	-1.8
3,517,421	-		GFF3477	0.24	-0.1
3,517,421	-		GFF3477	0.24	-0.0
3,517,421	-		GFF3477	0.24	-0.4
3,517,421	-		GFF3477	0.24	+0.5
3,517,421	-		GFF3477	0.24	-0.9
3,517,421	-		GFF3477	0.24	-0.5
3,517,421	-		GFF3477	0.24	-2.5
3,517,421	-		GFF3477	0.24	-1.1
3,517,421	-		GFF3477	0.24	-0.0
3,517,421	-		GFF3477	0.24	-0.7
3,517,423	+		GFF3477	0.24	-0.5
3,517,431	-		GFF3477	0.26	+0.9
3,517,444	+		GFF3477	0.29	-0.7
3,517,450	+		GFF3477	0.31	-0.1
3,517,461	+		GFF3477	0.33	-1.3
3,517,474	+		GFF3477	0.36	-3.2
3,517,512	+		GFF3477	0.45	-0.7
3,517,512	+		GFF3477	0.45	-1.9
3,517,547	-		GFF3477	0.54	-2.5
3,517,548	+		GFF3477	0.54	-1.8
3,517,558	+		GFF3477	0.56	+0.7
3,517,559	+		GFF3477	0.56	-1.0
3,517,594	+		GFF3477	0.65	+0.7
3,517,635	+		GFF3477	0.74	+1.2
3,517,635	+		GFF3477	0.74	-0.3
3,517,640	+		GFF3477	0.75	-1.2
3,517,640	+		GFF3477	0.75	-2.7
3,517,640	+		GFF3477	0.75	-0.4
3,517,640	+		GFF3477	0.75	-0.2
3,517,642	+		GFF3477	0.76	-0.5
3,517,648	-		GFF3477	0.77	-1.2
3,517,648	-		GFF3477	0.77	-1.9
3,517,648	-		GFF3477	0.77	+1.0
3,517,648	-		GFF3477	0.77	-0.4
3,517,648	-		GFF3477	0.77	-1.0
3,517,648	-		GFF3477	0.77	-0.4
3,517,648	-		GFF3477	0.77	-0.6
3,517,648	-		GFF3477	0.77	+0.6
3,517,648	-		GFF3477	0.77	+0.0
3,517,648	-		GFF3477	0.77	-0.2
3,517,648	-		GFF3477	0.77	+0.8
3,517,648	-		GFF3477	0.77	+0.0
3,517,650	+		GFF3477	0.78	-1.0
3,517,650	-		GFF3477	0.78	-0.1
3,517,661	-		GFF3477	0.80	+0.8
3,517,669	-		GFF3477	0.82	-1.0
3,517,669	-		GFF3477	0.82	-1.5
3,517,671	-		GFF3477	0.83	+0.2
3,517,671	-		GFF3477	0.83	+0.2
3,517,682	+		GFF3477	0.85	-1.6
3,517,688	+		GFF3477	0.87	-0.8
3,517,696	-		GFF3477	0.88	-2.1
3,517,701	-		GFF3477	0.90	-0.5
3,517,720	+				-2.2
3,517,731	-				-0.5
3,517,745	+				-1.5
3,517,755	+				-2.0
3,517,779	-		GFF3478	0.15	-1.0
3,517,786	+		GFF3478	0.18	-2.1
3,517,810	-		GFF3478	0.26	+1.0
3,517,817	+		GFF3478	0.29	-0.8
3,517,832	+		GFF3478	0.34	-0.7
3,517,837	+		GFF3478	0.36	-1.7
3,517,837	+		GFF3478	0.36	-1.4
3,517,837	+		GFF3478	0.36	-0.9
3,517,838	+		GFF3478	0.37	-1.4
3,517,845	-		GFF3478	0.39	-0.5
3,517,845	-		GFF3478	0.39	+0.9
3,517,845	-		GFF3478	0.39	-0.5
3,517,845	-		GFF3478	0.39	+0.2
3,517,845	-		GFF3478	0.39	-1.0
3,517,845	-		GFF3478	0.39	+0.0
3,517,845	-		GFF3478	0.39	-1.7
3,517,862	-		GFF3478	0.45	+0.6
3,517,905	-		GFF3478	0.61	-0.1
3,517,943	-		GFF3478	0.75	-0.7
3,517,974	+		GFF3478	0.86	-0.3
3,517,975	+		GFF3478	0.87	-3.0
3,517,975	+		GFF3478	0.87	-0.8
3,517,975	+		GFF3478	0.87	-0.2
3,517,983	-				-1.1
3,517,985	-				-2.0
3,517,994	+				-1.1
3,517,996	-				-0.1
3,518,002	-				-0.4
3,518,002	-				+0.5
3,518,004	+				+0.3
3,518,007	-				-0.8
3,518,020	+				-1.3
3,518,020	+				-0.4
3,518,020	+				-1.1
3,518,020	+				+1.4
3,518,020	+				+0.4
3,518,028	-				-0.3
3,518,028	-				-1.1
3,518,028	-				-0.7
3,518,028	-				-1.0
3,518,060	+		GFF3479	0.12	-0.8
3,518,071	-		GFF3479	0.15	-0.0
3,518,077	+		GFF3479	0.17	-0.5
3,518,083	+		GFF3479	0.18	-0.4
3,518,083	+		GFF3479	0.18	-1.3
3,518,084	-		GFF3479	0.19	+0.8
3,518,085	-		GFF3479	0.19	+0.7
3,518,088	+		GFF3479	0.20	+0.2
3,518,091	-		GFF3479	0.20	+0.6
3,518,093	+		GFF3479	0.21	-0.9
3,518,095	-		GFF3479	0.22	-0.7
3,518,101	-		GFF3479	0.23	+0.9
3,518,141	-		GFF3479	0.34	+0.3
3,518,168	+		GFF3479	0.41	-0.4
3,518,168	+		GFF3479	0.41	-0.8
3,518,168	+		GFF3479	0.41	-0.5
3,518,168	+		GFF3479	0.41	-0.9
3,518,205	-		GFF3479	0.50	+0.2
3,518,215	+		GFF3479	0.53	-0.5
3,518,215	+		GFF3479	0.53	+0.3
3,518,215	+		GFF3479	0.53	+0.4
3,518,215	+		GFF3479	0.53	-1.3
3,518,223	-		GFF3479	0.55	-1.7
3,518,223	-		GFF3479	0.55	+0.0
3,518,223	-		GFF3479	0.55	-1.3
3,518,223	-		GFF3479	0.55	-0.5
3,518,223	-		GFF3479	0.55	+1.4
3,518,223	-		GFF3479	0.55	-1.9
3,518,223	-		GFF3479	0.55	+0.6
3,518,233	+		GFF3479	0.58	-0.5
3,518,245	-		GFF3479	0.61	-1.9
3,518,246	-		GFF3479	0.61	-1.0
3,518,249	+		GFF3479	0.62	+0.3
3,518,256	+		GFF3479	0.64	-1.4
3,518,256	+		GFF3479	0.64	-2.2
3,518,264	-		GFF3479	0.66	-0.5
3,518,264	-		GFF3479	0.66	-0.4
3,518,282	+		GFF3479	0.71	-0.1
3,518,285	+		GFF3479	0.71	-1.9
3,518,290	+		GFF3479	0.73	-1.0
3,518,290	+		GFF3479	0.73	+0.7
3,518,290	+		GFF3479	0.73	+0.1
3,518,290	+		GFF3479	0.73	+0.2
3,518,293	-		GFF3479	0.73	+1.0
3,518,298	-		GFF3479	0.75	+0.2
3,518,307	+		GFF3479	0.77	+0.5
3,518,307	+		GFF3479	0.77	+1.4
3,518,312	+		GFF3479	0.78	-1.1
3,518,312	+		GFF3479	0.78	-0.4
3,518,325	+		GFF3479	0.82	-0.3
3,518,326	+		GFF3479	0.82	+0.1
3,518,338	-		GFF3479	0.85	-1.4
3,518,342	+		GFF3479	0.86	-0.0
3,518,360	-				-0.3
3,518,394	+				-1.2
3,518,394	+				+0.5
3,518,394	+				-0.5
3,518,395	+				-0.6
3,518,395	+				+0.1
3,518,395	+				-0.4
3,518,395	+				-0.0
3,518,395	+				-1.9
3,518,402	-				-1.2
3,518,403	-				-1.6
3,518,403	-				-0.7
3,518,403	-				-0.7
3,518,403	-				-0.5
3,518,403	-				-0.2
3,518,403	-				+1.3
3,518,403	-				-0.5
3,518,415	+				-1.5
3,518,416	+				+1.9
3,518,416	+				-1.7
3,518,424	-				+1.5
3,518,424	-				-1.6
3,518,443	+				-1.1
3,518,451	-				+1.4
3,518,451	-				-1.2
3,518,455	+				-0.7
3,518,461	-				-2.0
3,518,481	-				-1.1
3,518,545	+				+0.0
3,518,573	-				+0.7
3,518,583	+				-0.3
3,518,657	-		GFF3480	0.12	-1.5
3,518,662	-		GFF3480	0.12	-0.2
3,518,666	+		GFF3480	0.13	+0.6
3,518,666	+		GFF3480	0.13	-0.3
3,518,669	-		GFF3480	0.13	+0.0
3,518,674	-		GFF3480	0.13	+1.4
3,518,687	-		GFF3480	0.14	-0.5
3,518,702	+		GFF3480	0.15	-0.6
3,518,723	+		GFF3480	0.17	+0.8
3,518,723	+		GFF3480	0.17	-1.7
3,518,731	-		GFF3480	0.17	+0.9
3,518,731	-		GFF3480	0.17	+0.6
3,518,738	+		GFF3480	0.18	+0.0
3,518,744	-		GFF3480	0.18	-0.0
3,518,751	+		GFF3480	0.19	+0.2
3,518,759	-		GFF3480	0.19	-0.3
3,518,759	-		GFF3480	0.19	-0.2
3,518,770	-		GFF3480	0.20	+0.0
3,518,783	-		GFF3480	0.21	+0.0
3,518,823	-		GFF3480	0.24	+0.2
3,518,860	-		GFF3480	0.27	+1.2
3,518,860	-		GFF3480	0.27	-1.2
3,518,864	+		GFF3480	0.27	-0.3
3,518,864	+		GFF3480	0.27	+0.1
3,518,864	+		GFF3480	0.27	-0.7
3,518,864	+		GFF3480	0.27	-2.0
3,518,864	+		GFF3480	0.27	-2.1
3,518,864	+		GFF3480	0.27	-0.0
3,518,864	+		GFF3480	0.27	-1.3
3,518,864	+		GFF3480	0.27	-2.1
3,518,872	-		GFF3480	0.27	-1.2
3,518,872	-		GFF3480	0.27	+0.0
3,518,872	-		GFF3480	0.27	-1.5
3,518,872	-		GFF3480	0.27	-0.8
3,518,872	-		GFF3480	0.27	+0.9
3,518,872	-		GFF3480	0.27	+0.2
3,518,872	-		GFF3480	0.27	+1.7
3,518,872	-		GFF3480	0.27	-1.0
3,518,872	-		GFF3480	0.27	-0.1
3,518,883	-		GFF3480	0.28	-1.1
3,518,896	-		GFF3480	0.29	-0.7
3,518,902	-		GFF3480	0.30	-0.1
3,518,917	+		GFF3480	0.31	+1.6
3,518,925	-		GFF3480	0.31	+0.4
3,518,953	-		GFF3480	0.33	-0.8
3,518,954	+		GFF3480	0.33	-1.1
3,518,961	+		GFF3480	0.34	-1.0
3,518,962	-		GFF3480	0.34	+0.2
3,518,969	-		GFF3480	0.34	-0.8
3,518,983	+		GFF3480	0.35	-0.6
3,519,007	-		GFF3480	0.37	+1.9