Strain Fitness in Sphingobium sp. HT1-2 around GFF3414

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,456,249	+		GFF3413	0.84	-1.8
3,456,251	+		GFF3413	0.84	+1.0
3,456,257	-		GFF3413	0.84	-1.7
3,456,257	-		GFF3413	0.84	-0.2
3,456,259	+		GFF3413	0.84	-0.7
3,456,289	-		GFF3413	0.87	+0.3
3,456,305	+		GFF3413	0.88	-0.4
3,456,305	+		GFF3413	0.88	+0.3
3,456,305	+		GFF3413	0.88	-0.8
3,456,313	-		GFF3413	0.88	+0.3
3,456,334	+				-1.1
3,456,347	+				+1.2
3,456,347	+				-0.4
3,456,347	+				-2.0
3,456,355	-				+0.3
3,456,366	+				+0.6
3,456,366	+				-1.0
3,456,366	+				-0.1
3,456,366	+				+0.3
3,456,366	+				-1.1
3,456,374	-				-2.0
3,456,374	-				+1.0
3,456,374	-				-0.6
3,456,374	-				+0.9
3,456,374	-				+0.4
3,456,431	+				-0.2
3,456,431	+				-0.6
3,456,433	-				-0.4
3,456,439	-				-2.1
3,456,439	-				-0.1
3,456,461	+				-1.3
3,456,469	-				+1.1
3,456,649	+				-1.4
3,456,704	+				-0.7
3,456,726	+				-1.4
3,456,726	+				-0.9
3,456,726	+				-1.0
3,456,726	+				-0.4
3,456,726	+				-1.5
3,456,726	+				-1.6
3,456,726	+				+1.0
3,456,726	+				-1.1
3,456,726	+				+0.9
3,456,726	+				-0.9
3,456,726	+				-1.6
3,456,726	+				-3.1
3,456,726	+				+1.1
3,456,726	+				-1.0
3,456,726	+				+0.7
3,456,726	+				-0.5
3,456,726	+				+0.1
3,456,726	+				-1.0
3,456,726	+				-1.8
3,456,726	+				-0.4
3,456,726	+				-1.5
3,456,726	+				-0.7
3,456,726	+				-0.5
3,456,726	+				-0.2
3,456,726	+				-0.1
3,456,726	+				+0.1
3,456,726	+				+1.0
3,456,728	+				+0.1
3,456,728	+				-0.1
3,456,728	+				-1.4
3,456,728	+				+1.3
3,456,734	-				+0.0
3,456,734	-				+0.0
3,456,734	-				-1.2
3,456,734	-				+0.5
3,456,734	-				-0.9
3,456,734	-				-0.2
3,456,734	-				+1.0
3,456,734	-				-0.3
3,456,734	-				-2.1
3,456,734	-				+0.5
3,456,734	-				+0.6
3,456,734	-				-0.2
3,456,734	-				-1.8
3,456,734	-				+0.5
3,456,734	-				-1.8
3,456,734	-				+0.0
3,456,734	-				-0.5
3,456,734	-				+1.4
3,456,734	-				-0.9
3,456,734	-				-1.0
3,456,734	-				+1.4
3,456,734	-				-1.4
3,456,734	-				-0.7
3,456,734	-				-1.5
3,456,734	-				-0.2
3,456,734	-				+0.5
3,456,734	-				-0.1
3,456,734	-				+1.8
3,456,734	-				-1.6
3,456,734	-				-0.1
3,456,734	-				-1.6
3,456,734	-				+0.6
3,456,736	+				-0.8
3,456,748	+				-2.3
3,456,753	+				-0.5
3,456,753	+				-1.1
3,456,753	+				-0.6
3,456,753	+				-0.1
3,456,761	-				-0.4
3,456,766	-				-0.5
3,456,808	+				+0.0
3,456,816	-				-2.1
3,456,845	-				+0.3
3,456,845	-				-1.3
3,456,852	-				+0.0
3,456,869	+				-0.9
3,456,876	-				-1.6
3,456,878	+				+0.1
3,456,904	+				-0.6
3,456,914	-				-0.0
3,456,921	+				-0.7
3,456,924	+				-0.7
3,456,924	+				+0.5
3,456,932	-				+0.1
3,456,968	+				-1.6
3,456,987	+				-0.8
3,456,987	+				+0.9
3,457,018	+				-0.8
3,457,019	-				-0.0
3,457,104	+				+1.0
3,457,123	+				-1.9
3,457,123	+				+0.4
3,457,161	+				-1.2
3,457,233	+				+0.4
3,457,241	-				+0.9
3,457,263	+				-0.7
3,457,280	+		GFF3414	0.10	-2.0
3,457,288	-		GFF3414	0.12	+0.4
3,457,294	+		GFF3414	0.13	-0.8
3,457,299	+		GFF3414	0.15	-0.1
3,457,304	+		GFF3414	0.16	-0.2
3,457,307	+		GFF3414	0.16	-0.7
3,457,310	-		GFF3414	0.17	-0.1
3,457,312	-		GFF3414	0.18	-1.6
3,457,320	-		GFF3414	0.19	+0.1
3,457,359	+		GFF3414	0.28	-1.4
3,457,365	-		GFF3414	0.30	-2.3
3,457,373	+		GFF3414	0.32	-0.2
3,457,394	-		GFF3414	0.36	+0.1
3,457,399	-		GFF3414	0.37	+0.7
3,457,402	+		GFF3414	0.38	+0.3
3,457,402	+		GFF3414	0.38	-0.6
3,457,421	-		GFF3414	0.42	-1.4
3,457,439	+		GFF3414	0.47	-0.4
3,457,439	+		GFF3414	0.47	-0.5
3,457,447	-		GFF3414	0.48	+0.1
3,457,447	-		GFF3414	0.48	+0.4
3,457,464	+		GFF3414	0.52	+0.4
3,457,477	-		GFF3414	0.55	+0.0
3,457,488	-		GFF3414	0.58	+1.1
3,457,504	-		GFF3414	0.61	-0.9
3,457,504	-		GFF3414	0.61	-1.7
3,457,504	-		GFF3414	0.61	+0.3
3,457,504	-		GFF3414	0.61	+0.3
3,457,518	+		GFF3414	0.65	+0.6
3,457,518	+		GFF3414	0.65	-0.2
3,457,542	-		GFF3414	0.70	-0.7
3,457,553	+		GFF3414	0.73	-0.9
3,457,559	+		GFF3414	0.74	-0.0
3,457,583	+		GFF3414	0.79	+1.2
3,457,623	-		GFF3414	0.89	-1.1
3,457,623	-		GFF3414	0.89	-0.6
3,457,629	+				-0.6
3,457,629	+				-0.4
3,457,634	+				+1.0
3,457,634	+				+0.2
3,457,637	-				+0.1
3,457,642	-				-0.7
3,457,642	-				-0.3
3,457,647	-				+0.2
3,457,648	+				+1.3
3,457,656	-				-0.2
3,457,673	-				-0.4
3,457,728	-				-0.1
3,457,728	-				+1.8
3,457,728	-				-0.9
3,457,732	+				+0.9
3,457,732	+				+0.1
3,457,737	+				+0.5
3,457,737	+				-1.1
3,457,737	+				+0.2
3,457,737	+				+0.5
3,457,742	+				+1.0
3,457,750	-				-1.3
3,457,750	-				+0.0
3,457,755	+				+0.6
3,457,786	-				+0.1
3,457,797	-				-1.9
3,457,799	-				-0.4
3,457,819	-				-2.1
3,457,819	-				-0.6
3,457,819	-				-1.1
3,457,840	-		GFF3415	0.15	-0.6
3,457,845	-		GFF3415	0.17	+0.9
3,457,852	-		GFF3415	0.19	-1.5
3,457,867	+		GFF3415	0.24	-1.1
3,457,867	+		GFF3415	0.24	+0.2
3,457,867	+		GFF3415	0.24	-0.1
3,457,867	+		GFF3415	0.24	-1.1
3,457,867	+		GFF3415	0.24	-2.0
3,457,875	-		GFF3415	0.27	-0.2
3,457,875	-		GFF3415	0.27	+0.2
3,457,875	-		GFF3415	0.27	-2.3
3,457,875	-		GFF3415	0.27	-2.1
3,457,875	-		GFF3415	0.27	+0.7
3,457,875	-		GFF3415	0.27	-0.4
3,457,909	+		GFF3415	0.38	+0.8
3,457,917	-		GFF3415	0.41	-1.8
3,457,952	-		GFF3415	0.52	-1.4
3,457,956	-		GFF3415	0.53	+0.2
3,458,006	-		GFF3415	0.70	-1.0
3,458,006	-		GFF3415	0.70	-0.7
3,458,033	+		GFF3415	0.79	-0.2
3,458,039	-		GFF3415	0.81	+0.3
3,458,039	-		GFF3415	0.81	-0.3
3,458,090	+				+0.7
3,458,095	+				-0.1
3,458,104	+				-1.4
3,458,179	-				-0.6
3,458,193	-				+0.6
3,458,214	+		GFF3416	0.13	-0.2
3,458,214	+		GFF3416	0.13	+0.7
3,458,222	-		GFF3416	0.16	-1.1
3,458,227	-		GFF3416	0.18	+1.7
3,458,235	-		GFF3416	0.21	-2.5
3,458,246	+		GFF3416	0.24	-0.3
3,458,247	+		GFF3416	0.25	-0.8
3,458,254	+		GFF3416	0.27	+0.4
3,458,255	-		GFF3416	0.27	+2.0
3,458,262	+		GFF3416	0.30	-0.9
3,458,262	+		GFF3416	0.30	-1.0
3,458,262	+		GFF3416	0.30	-0.9
3,458,262	+		GFF3416	0.30	+0.6
3,458,262	+		GFF3416	0.30	-0.8
3,458,262	+		GFF3416	0.30	-0.8
3,458,262	+		GFF3416	0.30	+0.6
3,458,269	+		GFF3416	0.32	-1.5
3,458,270	-		GFF3416	0.32	+0.1
3,458,270	-		GFF3416	0.32	-0.9
3,458,270	-		GFF3416	0.32	+0.9
3,458,270	-		GFF3416	0.32	-0.6
3,458,270	-		GFF3416	0.32	+0.4
3,458,270	-		GFF3416	0.32	+0.3
3,458,270	-		GFF3416	0.32	-0.2
3,458,277	-		GFF3416	0.35	-0.6
3,458,283	-		GFF3416	0.37	-0.1
3,458,289	+		GFF3416	0.39	-2.1
3,458,303	-		GFF3416	0.43	-0.3
3,458,307	+		GFF3416	0.45	-0.5
3,458,318	-		GFF3416	0.48	-0.8
3,458,333	+		GFF3416	0.54	-1.1
3,458,349	-		GFF3416	0.59	-0.1
3,458,354	+		GFF3416	0.61	+0.1
3,458,354	+		GFF3416	0.61	-0.0
3,458,354	+		GFF3416	0.61	-0.9
3,458,357	-		GFF3416	0.62	-0.3
3,458,358	-		GFF3416	0.62	-1.5
3,458,362	+		GFF3416	0.63	+0.3
3,458,362	-		GFF3416	0.63	+0.4
3,458,362	-		GFF3416	0.63	+0.2
3,458,362	-		GFF3416	0.63	-0.4
3,458,362	-		GFF3416	0.63	-1.7
3,458,362	-		GFF3416	0.63	-0.8
3,458,362	-		GFF3416	0.63	-0.5
3,458,362	-		GFF3416	0.63	-0.6
3,458,362	-		GFF3416	0.63	+1.3
3,458,362	-		GFF3416	0.63	+0.4
3,458,362	-		GFF3416	0.63	-0.5
3,458,362	-		GFF3416	0.63	-2.3
3,458,362	-		GFF3416	0.63	+0.4
3,458,362	-		GFF3416	0.63	-0.7
3,458,376	-		GFF3416	0.68	-1.1
3,458,380	+		GFF3416	0.69	-0.2
3,458,380	+		GFF3416	0.69	+0.4
3,458,380	+		GFF3416	0.69	-0.6
3,458,380	+		GFF3416	0.69	+0.6
3,458,385	+		GFF3416	0.71	-2.0
3,458,398	-		GFF3416	0.75	-0.7
3,458,402	+		GFF3416	0.77	-1.8
3,458,402	+		GFF3416	0.77	-2.1
3,458,461	+				-0.7
3,458,461	+				-0.1
3,458,469	-				-0.1
3,458,469	-				+0.4
3,458,472	+				+0.0
3,458,472	+				-0.4
3,458,472	+				-1.0
3,458,472	+				+1.0
3,458,472	+				-0.6
3,458,472	+				-0.4
3,458,472	+				-0.8
3,458,472	+				+1.9
3,458,472	+				-2.2
3,458,472	+				+0.2
3,458,472	+				-1.1
3,458,480	-				-2.1
3,458,480	-				-0.4
3,458,480	-				+0.4
3,458,480	-				-0.3
3,458,480	-				-0.6
3,458,480	-				-0.1
3,458,480	-				-1.2
3,458,480	-				+0.6
3,458,480	-				-1.7
3,458,480	-				-2.5
3,458,480	-				+1.1
3,458,480	-				-2.5
3,458,480	-				-1.9
3,458,481	-				-1.8
3,458,491	+				-1.1
3,458,493	+				-0.6
3,458,499	-				+0.9
3,458,502	+				-1.8
3,458,510	-				-0.1
3,458,511	+				-1.4
3,458,516	+				+1.3
3,458,516	+				-1.8
3,458,516	+				-0.9
3,458,519	-				+0.7
3,458,524	-				-1.8
3,458,529	-				-0.6
3,458,530	+				-1.6
3,458,535	-				-0.6
3,458,619	+				+0.0
3,458,626	-				+0.2
3,458,626	-				-0.8
3,458,626	-				-0.2
3,458,649	+				-0.2
3,458,655	-		GFF3417	0.10	-0.9
3,458,655	-		GFF3417	0.10	+0.4