Strain Fitness in Sphingobium sp. HT1-2 around GFF3400

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,444,302	+				-2.4
3,444,302	-				+0.5
3,444,313	+				+0.4
3,444,337	+				+1.1
3,444,347	+				-0.6
3,444,379	+				+0.9
3,444,379	+				+0.8
3,444,379	+				+1.0
3,444,381	+				+0.2
3,444,381	+				+0.0
3,444,381	+				+1.9
3,444,387	-				-0.3
3,444,389	-				-1.2
3,444,389	-				-0.2
3,444,405	+				+0.8
3,444,417	+				+1.7
3,444,425	-				+0.9
3,444,427	+				+2.0
3,444,434	+				+0.0
3,444,434	+				+0.8
3,444,434	+				+0.4
3,444,434	+				-0.3
3,444,436	+				+0.7
3,444,436	+				+0.8
3,444,436	+				+0.2
3,444,436	+				-0.6
3,444,436	+				+0.3
3,444,437	-				+1.2
3,444,437	-				+1.7
3,444,441	+				-0.3
3,444,441	+				-1.8
3,444,442	-				-0.8
3,444,442	-				-0.1
3,444,442	-				+0.6
3,444,442	-				+0.0
3,444,442	-				+2.1
3,444,442	-				+1.1
3,444,442	-				+0.3
3,444,442	-				+0.3
3,444,444	-				+0.4
3,444,444	-				+1.2
3,444,444	-				-0.5
3,444,446	+				+0.8
3,444,446	+				+1.8
3,444,446	+				+2.3
3,444,483	+				+1.0
3,444,560	-		GFF3399	0.12	+0.8
3,444,564	+		GFF3399	0.12	+1.6
3,444,564	+		GFF3399	0.12	+0.4
3,444,566	-		GFF3399	0.13	+0.7
3,444,588	+		GFF3399	0.15	+0.7
3,444,597	-		GFF3399	0.16	+1.7
3,444,621	-		GFF3399	0.19	+0.7
3,444,621	-		GFF3399	0.19	-0.2
3,444,623	+		GFF3399	0.20	+1.6
3,444,631	-		GFF3399	0.21	+1.1
3,444,633	+		GFF3399	0.21	+0.2
3,444,677	-		GFF3399	0.26	+0.8
3,444,691	+		GFF3399	0.28	-0.2
3,444,736	+		GFF3399	0.33	+1.1
3,444,756	-		GFF3399	0.36	+0.1
3,444,771	-		GFF3399	0.38	-2.0
3,444,794	+		GFF3399	0.40	+0.2
3,444,802	-		GFF3399	0.41	+0.9
3,444,802	-		GFF3399	0.41	+0.6
3,444,821	-		GFF3399	0.44	+0.3
3,444,871	-		GFF3399	0.50	+0.8
3,444,885	+		GFF3399	0.51	+0.7
3,444,894	+		GFF3399	0.52	+1.1
3,444,896	+		GFF3399	0.53	+0.8
3,444,896	+		GFF3399	0.53	+1.0
3,444,906	+		GFF3399	0.54	+1.0
3,444,914	-		GFF3399	0.55	+0.9
3,444,935	+		GFF3399	0.57	-0.8
3,444,958	-		GFF3399	0.60	+0.5
3,444,966	-		GFF3399	0.61	-0.8
3,444,991	+		GFF3399	0.64	+1.1
3,444,994	+		GFF3399	0.65	-1.0
3,444,994	+		GFF3399	0.65	+0.4
3,445,014	+		GFF3399	0.67	+0.6
3,445,022	-		GFF3399	0.68	-0.1
3,445,047	+		GFF3399	0.71	+0.0
3,445,055	-		GFF3399	0.72	+0.9
3,445,057	+		GFF3399	0.72	+0.6
3,445,057	+		GFF3399	0.72	-0.4
3,445,057	+		GFF3399	0.72	+1.5
3,445,057	+		GFF3399	0.72	+1.0
3,445,057	+		GFF3399	0.72	+1.3
3,445,057	+		GFF3399	0.72	+0.1
3,445,057	+		GFF3399	0.72	+0.1
3,445,057	+		GFF3399	0.72	-0.9
3,445,057	+		GFF3399	0.72	-0.4
3,445,057	+		GFF3399	0.72	+1.1
3,445,057	+		GFF3399	0.72	+0.6
3,445,057	+		GFF3399	0.72	+0.0
3,445,057	+		GFF3399	0.72	+0.4
3,445,057	+		GFF3399	0.72	+0.3
3,445,057	+		GFF3399	0.72	-0.4
3,445,062	+		GFF3399	0.73	+1.0
3,445,065	-		GFF3399	0.73	+0.4
3,445,065	-		GFF3399	0.73	+0.7
3,445,065	-		GFF3399	0.73	+1.4
3,445,065	-		GFF3399	0.73	+0.4
3,445,065	-		GFF3399	0.73	+0.6
3,445,065	-		GFF3399	0.73	+1.6
3,445,065	-		GFF3399	0.73	-1.9
3,445,077	+		GFF3399	0.75	-1.0
3,445,077	+		GFF3399	0.75	-0.1
3,445,077	+		GFF3399	0.75	-0.2
3,445,077	+		GFF3399	0.75	+0.3
3,445,077	+		GFF3399	0.75	+0.7
3,445,077	-		GFF3399	0.75	-0.9
3,445,085	-		GFF3399	0.76	+1.2
3,445,085	-		GFF3399	0.76	+0.3
3,445,085	-		GFF3399	0.76	+1.2
3,445,085	-		GFF3399	0.76	+0.6
3,445,085	-		GFF3399	0.76	+0.5
3,445,089	+		GFF3399	0.76	+1.5
3,445,094	+		GFF3399	0.77	+1.6
3,445,102	-		GFF3399	0.78	-0.1
3,445,111	+		GFF3399	0.79	+0.6
3,445,119	-		GFF3399	0.80	-0.6
3,445,119	-		GFF3399	0.80	+1.4
3,445,166	+		GFF3399	0.85	+0.4
3,445,172	-		GFF3399	0.86	+0.0
3,445,176	-		GFF3399	0.87	+0.8
3,445,212	+				+1.1
3,445,212	+				+0.0
3,445,223	-				+1.9
3,445,225	-				+0.6
3,445,240	-				+0.0
3,445,264	-				+0.6
3,445,270	+				-0.3
3,445,278	-				+1.3
3,445,281	-				-1.4
3,445,307	+				+1.4
3,445,385	-				+0.6
3,445,412	+		GFF3400	0.11	+0.1
3,445,427	+		GFF3400	0.13	-2.9
3,445,452	+		GFF3400	0.15	+0.2
3,445,463	+		GFF3400	0.16	+0.1
3,445,471	-		GFF3400	0.17	+0.5
3,445,502	-		GFF3400	0.19	+1.3
3,445,525	+		GFF3400	0.21	-0.9
3,445,526	-		GFF3400	0.22	+0.2
3,445,556	-		GFF3400	0.24	+0.4
3,445,592	-		GFF3400	0.27	+0.6
3,445,594	+		GFF3400	0.28	+1.1
3,445,603	+		GFF3400	0.28	+0.8
3,445,604	-		GFF3400	0.28	-1.4
3,445,622	+		GFF3400	0.30	+0.1
3,445,627	+		GFF3400	0.30	-0.2
3,445,635	-		GFF3400	0.31	-0.4
3,445,640	+		GFF3400	0.32	-0.1
3,445,648	-		GFF3400	0.32	+1.4
3,445,656	-		GFF3400	0.33	+0.0
3,445,662	+		GFF3400	0.34	-0.1
3,445,662	+		GFF3400	0.34	+1.1
3,445,670	-		GFF3400	0.34	+0.8
3,445,700	+		GFF3400	0.37	+1.6
3,445,724	-		GFF3400	0.39	-0.8
3,445,726	-		GFF3400	0.39	+0.9
3,445,728	+		GFF3400	0.39	+1.0
3,445,732	+		GFF3400	0.40	+0.8
3,445,732	-		GFF3400	0.40	+0.8
3,445,733	+		GFF3400	0.40	+0.1
3,445,735	+		GFF3400	0.40	+0.2
3,445,737	+		GFF3400	0.40	+0.1
3,445,752	-		GFF3400	0.41	+0.8
3,445,800	-		GFF3400	0.46	+1.1
3,445,805	-		GFF3400	0.46	+0.7
3,445,813	+		GFF3400	0.47	+0.9
3,445,813	+		GFF3400	0.47	-0.4
3,445,813	+		GFF3400	0.47	+0.9
3,445,821	-		GFF3400	0.48	+0.5
3,445,821	-		GFF3400	0.48	+0.4
3,445,821	-		GFF3400	0.48	+0.2
3,445,821	-		GFF3400	0.48	+1.0
3,445,821	-		GFF3400	0.48	-1.5
3,445,821	-		GFF3400	0.48	+0.8
3,445,821	-		GFF3400	0.48	+0.0
3,445,821	-		GFF3400	0.48	-1.8
3,445,823	+		GFF3400	0.48	+1.2
3,445,833	+		GFF3400	0.49	-1.4
3,445,841	-		GFF3400	0.49	+1.5
3,445,847	+		GFF3400	0.50	+2.1
3,445,848	+		GFF3400	0.50	+0.3
3,445,848	+		GFF3400	0.50	-0.5
3,445,855	+		GFF3400	0.51	+0.5
3,445,893	+		GFF3400	0.54	-0.1
3,445,907	-		GFF3400	0.55	+0.5
3,445,935	+		GFF3400	0.58	-0.6
3,445,943	-		GFF3400	0.58	-0.2
3,445,961	+		GFF3400	0.60	-0.1
3,445,989	+		GFF3400	0.62	-0.1
3,446,018	+		GFF3400	0.65	-1.2
3,446,026	-		GFF3400	0.66	-1.1
3,446,028	+		GFF3400	0.66	+2.0
3,446,028	+		GFF3400	0.66	+0.3
3,446,036	-		GFF3400	0.66	+0.7
3,446,036	-		GFF3400	0.66	+0.7
3,446,038	+		GFF3400	0.67	-0.3
3,446,048	-		GFF3400	0.68	+0.9
3,446,063	+		GFF3400	0.69	+2.1
3,446,087	+		GFF3400	0.71	-0.8
3,446,095	-		GFF3400	0.72	+0.6
3,446,097	+		GFF3400	0.72	+0.9
3,446,102	+		GFF3400	0.72	+0.7
3,446,107	+		GFF3400	0.73	-0.6
3,446,128	+		GFF3400	0.75	+0.6
3,446,128	+		GFF3400	0.75	+0.4
3,446,133	+		GFF3400	0.75	-1.0
3,446,133	+		GFF3400	0.75	+0.2
3,446,133	+		GFF3400	0.75	+0.2
3,446,133	+		GFF3400	0.75	+1.5
3,446,136	-		GFF3400	0.75	+1.2
3,446,136	-		GFF3400	0.75	-0.4
3,446,141	-		GFF3400	0.76	+0.3
3,446,210	+		GFF3400	0.82	+1.2
3,446,210	+		GFF3400	0.82	-1.1
3,446,210	+		GFF3400	0.82	+0.6
3,446,215	+		GFF3400	0.82	-0.1
3,446,215	+		GFF3400	0.82	+1.1
3,446,215	+		GFF3400	0.82	-0.0
3,446,218	-		GFF3400	0.83	+1.2
3,446,223	-		GFF3400	0.83	-0.2
3,446,223	-		GFF3400	0.83	-0.2
3,446,234	+		GFF3400	0.84	+0.4
3,446,234	+		GFF3400	0.84	+1.8
3,446,235	-		GFF3400	0.84	-0.1
3,446,257	+		GFF3400	0.86	+0.7
3,446,257	+		GFF3400	0.86	-0.2
3,446,265	-		GFF3400	0.87	-0.1
3,446,274	-		GFF3400	0.87	+0.4
3,446,277	+		GFF3400	0.88	-0.6
3,446,311	-				+0.5
3,446,311	-				+0.5
3,446,321	+				-0.1
3,446,327	-				-1.8
3,446,337	-				-0.8
3,446,359	+				+1.1
3,446,359	+				+0.4
3,446,359	+				-1.6
3,446,362	-				-1.0
3,446,367	-				+0.1
3,446,369	+				+0.9
3,446,377	-				+1.1
3,446,429	-				-1.7
3,446,431	+				+0.7
3,446,439	-				-0.3
3,446,439	-				+0.0
3,446,441	+				+0.9
3,446,449	-				+0.2
3,446,458	-				+0.3
3,446,500	-				+1.2
3,446,500	-				+1.0
3,446,518	+				+0.2
3,446,518	+				+1.1
3,446,518	+				+0.5
3,446,518	+				-0.5
3,446,519	+				-1.1
3,446,593	-				+1.3
3,446,598	+				+1.2
3,446,598	+				+0.1
3,446,598	+				+0.4
3,446,598	+				+0.7
3,446,606	-				-2.4
3,446,606	-				-0.0
3,446,606	-				+0.6
3,446,606	-				-0.8
3,446,607	+				-2.6
3,446,608	+				+0.3
3,446,616	-				+1.1
3,446,618	+				-0.7
3,446,622	-				+0.1
3,446,626	-				-0.6
3,446,626	-				-1.0
3,446,626	-				+0.4
3,446,627	+				+2.1
3,446,652	+				+0.7
3,446,652	+				+0.3
3,446,660	-				+0.7
3,446,660	-				+1.8
3,446,665	+				+1.3
3,446,665	+				+0.3
3,446,729	+				+1.3
3,446,739	+				-1.4
3,446,756	+				+0.0
3,446,761	+				-2.1
3,446,761	+				-1.0
3,446,766	+				+1.1
3,446,769	-				+1.9
3,446,769	-				+0.1
3,446,776	+				-0.2
3,446,776	+				+0.6
3,446,776	+				+0.4
3,446,784	-				+1.4
3,446,806	-				-0.1
3,446,812	+				-0.6
3,446,836	-		GFF3401	0.12	+0.9
3,446,862	-		GFF3401	0.15	-1.4
3,446,889	+		GFF3401	0.18	+0.4
3,446,889	+		GFF3401	0.18	-0.9
3,446,897	-		GFF3401	0.19	+1.6
3,446,917	-		GFF3401	0.21	+0.5
3,446,962	+		GFF3401	0.27	-0.5
3,446,970	-		GFF3401	0.28	-0.3
3,446,982	+		GFF3401	0.29	+1.3
3,446,982	+		GFF3401	0.29	-0.1
3,446,990	-		GFF3401	0.30	+0.4
3,447,027	-		GFF3401	0.34	+0.4
3,447,042	+		GFF3401	0.36	+0.3
3,447,042	+		GFF3401	0.36	+0.5
3,447,047	+		GFF3401	0.36	+0.4
3,447,050	-		GFF3401	0.37	+0.0
3,447,098	+		GFF3401	0.42	+0.2
3,447,101	+		GFF3401	0.43	+0.9
3,447,103	+		GFF3401	0.43	-1.2
3,447,103	+		GFF3401	0.43	+1.0
3,447,164	+		GFF3401	0.50	+0.6
3,447,165	+		GFF3401	0.50	+0.5
3,447,177	+		GFF3401	0.52	-1.2
3,447,180	-		GFF3401	0.52	-0.4
3,447,202	-		GFF3401	0.55	-0.6
3,447,215	+		GFF3401	0.56	+1.0
3,447,236	+		GFF3401	0.59	+1.4
3,447,236	+		GFF3401	0.59	+0.4
3,447,264	+		GFF3401	0.62	-1.4
3,447,268	+		GFF3401	0.62	+0.4
3,447,268	+		GFF3401	0.62	+0.8
3,447,268	+		GFF3401	0.62	+1.5
3,447,333	-		GFF3401	0.70	+0.3
3,447,334	+		GFF3401	0.70	+1.2
3,447,334	+		GFF3401	0.70	+0.8
3,447,335	-		GFF3401	0.70	+0.7
3,447,336	-		GFF3401	0.70	+0.9
3,447,342	-		GFF3401	0.71	+0.3
3,447,342	-		GFF3401	0.71	+1.1
3,447,342	-		GFF3401	0.71	+0.6
3,447,345	+		GFF3401	0.71	+0.6
3,447,352	-		GFF3401	0.72	+0.7
3,447,367	-		GFF3401	0.74	+0.5
3,447,393	-		GFF3401	0.77	+1.6
3,447,401	+		GFF3401	0.78	-1.8
3,447,406	+		GFF3401	0.78	+0.4
3,447,406	+		GFF3401	0.78	+0.2
3,447,406	+		GFF3401	0.78	+0.9
3,447,406	+		GFF3401	0.78	+1.9
3,447,406	+		GFF3401	0.78	+0.6
3,447,409	-		GFF3401	0.79	-0.4
3,447,414	-		GFF3401	0.79	+1.4