Strain Fitness in Sphingobium sp. HT1-2 around GFF3310

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,361,306	-		GFF3308	0.71	-2.0
3,361,306	-		GFF3308	0.71	+1.0
3,361,306	-		GFF3308	0.71	-0.6
3,361,306	-		GFF3308	0.71	-1.9
3,361,353	-		GFF3308	0.74	-1.3
3,361,361	+		GFF3308	0.74	-0.3
3,361,361	+		GFF3308	0.74	-0.7
3,361,361	+		GFF3308	0.74	-2.3
3,361,369	-		GFF3308	0.74	-1.0
3,361,369	-		GFF3308	0.74	-0.4
3,361,369	-		GFF3308	0.74	-0.1
3,361,369	-		GFF3308	0.74	+0.8
3,361,375	-		GFF3308	0.75	+0.3
3,361,382	-		GFF3308	0.75	+0.2
3,361,405	+		GFF3308	0.76	-0.0
3,361,405	+		GFF3308	0.76	-1.7
3,361,413	+		GFF3308	0.76	+0.9
3,361,421	+		GFF3308	0.77	-0.3
3,361,426	+		GFF3308	0.77	-0.6
3,361,431	+		GFF3308	0.77	-1.3
3,361,431	+		GFF3308	0.77	-1.8
3,361,431	+		GFF3308	0.77	+0.0
3,361,437	+		GFF3308	0.77	+0.1
3,361,439	-		GFF3308	0.78	+0.6
3,361,449	+		GFF3308	0.78	-0.0
3,361,449	+		GFF3308	0.78	-0.8
3,361,449	+		GFF3308	0.78	-1.0
3,361,449	+		GFF3308	0.78	+0.3
3,361,449	+		GFF3308	0.78	-0.2
3,361,457	-		GFF3308	0.78	-0.3
3,361,457	-		GFF3308	0.78	+0.5
3,361,457	-		GFF3308	0.78	-1.6
3,361,457	-		GFF3308	0.78	-0.1
3,361,457	-		GFF3308	0.78	-0.0
3,361,457	-		GFF3308	0.78	-0.7
3,361,457	-		GFF3308	0.78	-0.8
3,361,457	-		GFF3308	0.78	+0.3
3,361,481	-		GFF3308	0.79	-1.9
3,361,483	-		GFF3308	0.80	+0.2
3,361,496	+		GFF3308	0.80	-0.2
3,361,501	+		GFF3308	0.80	+1.0
3,361,509	-		GFF3308	0.81	+0.5
3,361,509	-		GFF3308	0.81	-0.3
3,361,509	-		GFF3308	0.81	-2.6
3,361,509	-		GFF3308	0.81	-1.2
3,361,514	-		GFF3308	0.81	+0.8
3,361,535	+		GFF3308	0.82	+1.3
3,361,548	-		GFF3308	0.83	-0.1
3,361,565	+		GFF3308	0.83	+0.8
3,361,565	+		GFF3308	0.83	+0.7
3,361,565	+		GFF3308	0.83	+0.1
3,361,565	+		GFF3308	0.83	+0.1
3,361,571	-		GFF3308	0.84	+0.4
3,361,580	+		GFF3308	0.84	-2.8
3,361,580	+		GFF3308	0.84	-0.0
3,361,583	-		GFF3308	0.84	-1.8
3,361,588	-		GFF3308	0.84	-0.5
3,361,588	-		GFF3308	0.84	-1.1
3,361,590	-		GFF3308	0.85	-0.1
3,361,593	-		GFF3308	0.85	+0.0
3,361,593	-		GFF3308	0.85	-0.9
3,361,594	+		GFF3308	0.85	+0.5
3,361,598	+		GFF3308	0.85	+0.5
3,361,599	+		GFF3308	0.85	+0.3
3,361,599	+		GFF3308	0.85	-1.5
3,361,599	+		GFF3308	0.85	-0.5
3,361,599	+		GFF3308	0.85	-0.2
3,361,599	+		GFF3308	0.85	+0.8
3,361,599	+		GFF3308	0.85	-0.8
3,361,604	+		GFF3308	0.85	-1.2
3,361,604	+		GFF3308	0.85	-0.4
3,361,607	-		GFF3308	0.85	+0.5
3,361,607	-		GFF3308	0.85	-0.9
3,361,607	-		GFF3308	0.85	-2.6
3,361,607	-		GFF3308	0.85	+1.0
3,361,607	-		GFF3308	0.85	-0.6
3,361,607	-		GFF3308	0.85	-0.4
3,361,607	-		GFF3308	0.85	-0.9
3,361,607	-		GFF3308	0.85	+0.9
3,361,607	-		GFF3308	0.85	+0.4
3,361,609	+		GFF3308	0.85	-1.7
3,361,617	-		GFF3308	0.86	-2.3
3,361,617	-		GFF3308	0.86	-0.1
3,361,617	-		GFF3308	0.86	-0.2
3,361,617	-		GFF3308	0.86	+0.7
3,361,632	+		GFF3308	0.86	+0.3
3,361,634	-		GFF3308	0.87	+0.7
3,361,641	-		GFF3308	0.87	-0.6
3,361,654	+		GFF3308	0.87	-0.2
3,361,662	-		GFF3308	0.88	+1.0
3,361,665	+		GFF3308	0.88	-0.4
3,361,682	+		GFF3308	0.89	-0.5
3,361,690	-		GFF3308	0.89	-1.8
3,361,701	+		GFF3308	0.90	-0.2
3,361,718	-				+0.2
3,361,721	+				-0.2
3,361,731	+				+0.6
3,361,731	+				+0.9
3,361,737	-				-0.3
3,361,757	+				+0.6
3,361,762	+				+0.2
3,361,774	-				-0.2
3,361,784	-				+1.0
3,361,784	-				-2.1
3,361,784	-				+1.5
3,361,796	-				-0.0
3,361,853	+				-0.9
3,361,861	+				+0.5
3,361,864	-				+0.1
3,361,869	+				-1.3
3,361,869	+				-0.6
3,361,869	+				+0.2
3,361,877	-				-0.5
3,361,887	-				+0.1
3,361,892	-				-0.1
3,361,892	-				-2.6
3,361,898	+				-0.1
3,361,898	+				+0.6
3,361,898	+				-0.3
3,361,906	-				-2.3
3,361,906	-				+0.5
3,361,906	-				-0.6
3,361,908	+				-0.6
3,361,911	-				-0.8
3,361,916	-				+0.6
3,361,916	-				-0.9
3,361,925	+				-0.4
3,361,948	-				-2.0
3,361,956	-				-0.2
3,362,636	+				-1.0
3,362,636	+				+0.6
3,362,636	+				+0.9
3,362,636	+				+1.0
3,362,636	+				-2.3
3,362,636	+				-0.8
3,362,636	+				-0.6
3,362,636	+				-2.6
3,362,636	+				+0.8
3,362,636	+				+0.1
3,362,636	+				+0.2
3,362,636	+				-0.5
3,362,636	+				-0.7
3,362,636	+				-0.1
3,362,636	+				-0.5
3,362,636	+				+0.3
3,362,644	-				+0.1
3,362,644	-				-0.7
3,362,644	-				-1.3
3,362,644	-				+0.3
3,362,644	-				-2.6
3,362,644	-				-0.1
3,362,644	-				+1.1
3,362,644	-				-0.0
3,362,644	-				-1.9
3,362,644	-				-1.5
3,362,644	-				-2.2
3,362,644	-				+0.1
3,362,644	-				-2.6
3,362,644	-				-1.9
3,362,644	-				+0.1
3,362,644	-				-1.6
3,362,644	-				+0.3
3,362,644	-				-1.6
3,362,644	-				-0.1
3,362,644	-				-1.1
3,362,644	-				-1.4
3,362,651	+				+0.3
3,362,658	+				-0.1
3,362,658	+				-1.6
3,362,658	+				-1.0
3,362,666	-				+1.1
3,362,666	-				-0.6
3,362,666	-				-0.9
3,362,666	-				-1.8
3,362,666	-				+0.2
3,362,683	+				-0.5
3,362,691	-				-1.8
3,362,699	+				-1.3
3,362,730	+				+0.9
3,362,757	+				+0.8
3,362,771	+				+0.0
3,362,811	+				+0.1
3,362,814	+				-0.0
3,362,817	+				-0.7
3,362,819	-				+0.6
3,362,819	-				-0.6
3,362,819	-				-2.3
3,362,819	-				-0.4
3,362,819	-				-0.6
3,362,822	-				-1.0
3,362,824	+				+0.1
3,362,861	+				-0.1
3,362,902	+				-0.7
3,362,903	+				+0.4
3,362,905	-		GFF3311	0.10	+0.4
3,362,921	+		GFF3311	0.13	+0.3
3,362,921	+		GFF3311	0.13	-1.2
3,362,926	+		GFF3311	0.14	-0.2
3,362,931	+		GFF3311	0.14	-0.6
3,362,931	+		GFF3311	0.14	+0.2
3,362,934	-		GFF3311	0.15	+0.4
3,362,939	+		GFF3311	0.16	-2.3
3,362,939	+		GFF3311	0.16	-0.8
3,362,939	+		GFF3311	0.16	-0.3
3,362,947	-		GFF3311	0.17	+0.3
3,362,947	-		GFF3311	0.17	-1.1
3,362,947	-		GFF3311	0.17	-1.0
3,362,947	-		GFF3311	0.17	+1.5
3,362,947	-		GFF3311	0.17	+0.7
3,362,947	-		GFF3311	0.17	-0.7
3,362,947	-		GFF3311	0.17	-2.4
3,362,969	+		GFF3311	0.20	+0.2
3,362,969	+		GFF3311	0.20	+0.7
3,362,969	+		GFF3311	0.20	-0.0
3,362,974	+		GFF3311	0.21	-0.3
3,362,974	+		GFF3311	0.21	-0.2
3,362,974	+		GFF3311	0.21	+0.6
3,362,974	+		GFF3311	0.21	-0.5
3,362,976	+		GFF3311	0.22	-0.8
3,362,977	-		GFF3311	0.22	-0.7
3,362,979	+		GFF3311	0.22	-2.1
3,362,979	+		GFF3311	0.22	+0.5
3,362,982	-		GFF3311	0.23	-0.7
3,362,982	-		GFF3311	0.23	-0.9
3,362,982	-		GFF3311	0.23	-0.0
3,362,982	-		GFF3311	0.23	+0.6
3,362,982	-		GFF3311	0.23	-0.9
3,362,982	-		GFF3311	0.23	+0.5
3,362,982	-		GFF3311	0.23	+0.3
3,362,982	-		GFF3311	0.23	+0.4
3,362,984	+		GFF3311	0.23	-0.3
3,362,987	+		GFF3311	0.23	-1.5
3,362,987	-		GFF3311	0.23	-0.5
3,362,987	-		GFF3311	0.23	+0.5
3,362,989	+		GFF3311	0.24	+0.8
3,362,989	+		GFF3311	0.24	+1.4
3,362,989	+		GFF3311	0.24	-0.6
3,362,997	+		GFF3311	0.25	-0.3
3,362,997	+		GFF3311	0.25	+0.1
3,362,997	+		GFF3311	0.25	+1.5
3,362,997	-		GFF3311	0.25	+0.2
3,362,997	-		GFF3311	0.25	-0.7
3,362,997	-		GFF3311	0.25	+0.3
3,362,997	-		GFF3311	0.25	+0.6
3,362,997	-		GFF3311	0.25	-0.5
3,363,008	+		GFF3311	0.27	-0.1
3,363,008	+		GFF3311	0.27	-0.2
3,363,013	+		GFF3311	0.28	+0.7
3,363,013	+		GFF3311	0.28	-0.8
3,363,016	-		GFF3311	0.28	-0.2
3,363,020	+		GFF3311	0.29	-2.3
3,363,020	+		GFF3311	0.29	+0.8
3,363,021	-		GFF3311	0.29	+0.3
3,363,021	-		GFF3311	0.29	+1.4
3,363,021	-		GFF3311	0.29	+1.4
3,363,021	-		GFF3311	0.29	+0.6
3,363,028	-		GFF3311	0.30	-2.1
3,363,028	-		GFF3311	0.30	+0.7
3,363,033	+		GFF3311	0.31	+1.6
3,363,033	+		GFF3311	0.31	+0.5
3,363,033	+		GFF3311	0.31	-0.2
3,363,041	-		GFF3311	0.32	+0.3
3,363,041	-		GFF3311	0.32	+0.1
3,363,041	-		GFF3311	0.32	+0.5
3,363,052	-		GFF3311	0.34	-0.1
3,363,054	+		GFF3311	0.34	-1.0
3,363,062	-		GFF3311	0.35	-1.0
3,363,062	-		GFF3311	0.35	-0.9
3,363,062	-		GFF3311	0.35	+0.9
3,363,071	+		GFF3311	0.37	-2.0
3,363,079	-		GFF3311	0.38	-0.9
3,363,085	+		GFF3311	0.39	-0.2
3,363,093	-		GFF3311	0.40	-0.7
3,363,102	+		GFF3311	0.42	+0.1
3,363,102	+		GFF3311	0.42	+0.1
3,363,113	+		GFF3311	0.44	-1.0
3,363,113	+		GFF3311	0.44	-0.1
3,363,113	+		GFF3311	0.44	+0.2
3,363,113	+		GFF3311	0.44	+0.1
3,363,117	-		GFF3311	0.44	-0.1
3,363,121	+		GFF3311	0.45	-0.7
3,363,121	+		GFF3311	0.45	-0.7
3,363,121	-		GFF3311	0.45	+0.2
3,363,123	+		GFF3311	0.45	-0.3
3,363,123	+		GFF3311	0.45	+0.7
3,363,123	+		GFF3311	0.45	-1.3
3,363,123	+		GFF3311	0.45	+0.2
3,363,123	+		GFF3311	0.45	+0.3
3,363,123	+		GFF3311	0.45	-0.6
3,363,131	-		GFF3311	0.47	+0.5
3,363,164	-		GFF3311	0.52	-0.2
3,363,177	+		GFF3311	0.54	+0.4
3,363,177	+		GFF3311	0.54	+0.1
3,363,177	+		GFF3311	0.54	-2.6
3,363,177	+		GFF3311	0.54	-2.3
3,363,177	+		GFF3311	0.54	+0.5
3,363,177	+		GFF3311	0.54	-0.3
3,363,185	-		GFF3311	0.55	-1.7
3,363,185	-		GFF3311	0.55	-0.1
3,363,185	-		GFF3311	0.55	-0.8
3,363,185	-		GFF3311	0.55	-0.3
3,363,185	-		GFF3311	0.55	-1.0
3,363,192	+		GFF3311	0.56	+0.7
3,363,204	+		GFF3311	0.58	+0.4
3,363,204	+		GFF3311	0.58	+0.2
3,363,212	-		GFF3311	0.60	-1.6
3,363,218	-		GFF3311	0.61	-0.2
3,363,219	+		GFF3311	0.61	-1.0
3,363,232	+		GFF3311	0.63	+0.3
3,363,242	+		GFF3311	0.64	-0.6
3,363,261	+		GFF3311	0.67	-0.1
3,363,261	+		GFF3311	0.67	-1.2
3,363,264	-		GFF3311	0.68	-0.6
3,363,269	-		GFF3311	0.69	-0.1
3,363,277	-		GFF3311	0.70	-3.0
3,363,278	-		GFF3311	0.70	-0.6
3,363,289	+		GFF3311	0.72	-0.8
3,363,297	+		GFF3311	0.73	-1.5
3,363,310	-		GFF3311	0.75	+0.8
3,363,312	+		GFF3311	0.76	-2.1
3,363,321	+		GFF3311	0.77	-1.0
3,363,334	-		GFF3311	0.79	+0.4
3,363,347	+		GFF3311	0.81	-2.0
3,363,368	+		GFF3311	0.85	-0.9
3,363,376	-		GFF3311	0.86	-2.2
3,363,394	+		GFF3311	0.89	-0.1
3,363,402	-				-2.1
3,363,404	-				-2.2
3,363,412	+				-0.9
3,363,412	+				+0.0
3,363,420	-				-0.3
3,363,420	-				+1.0
3,363,420	-				-0.7
3,363,421	-				-1.7
3,363,456	+				-0.6
3,363,456	+				-1.7
3,363,457	+				-0.0
3,363,457	+				-0.1
3,363,463	+				-1.9
3,363,463	+				+0.5
3,363,464	-				+0.5
3,363,464	-				-1.9
3,363,464	-				-1.0
3,363,464	-				-0.1
3,363,464	-				+0.9
3,363,464	-				-1.1
3,363,464	-				+0.4
3,363,471	-				-0.5
3,363,486	+				-0.1
3,363,492	+				+0.1