Strain Fitness in Sphingobium sp. HT1-2 around GFF3232

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,286,008	+		GFF3231	0.16	+0.3
3,286,008	+		GFF3231	0.16	-0.5
3,286,008	+		GFF3231	0.16	-1.5
3,286,008	+		GFF3231	0.16	+0.3
3,286,008	+		GFF3231	0.16	+0.5
3,286,008	+		GFF3231	0.16	+0.4
3,286,008	+		GFF3231	0.16	-2.8
3,286,008	+		GFF3231	0.16	+0.0
3,286,008	+		GFF3231	0.16	+0.8
3,286,008	+		GFF3231	0.16	+1.2
3,286,008	+		GFF3231	0.16	+1.0
3,286,008	+		GFF3231	0.16	+2.2
3,286,008	+		GFF3231	0.16	-0.3
3,286,009	+		GFF3231	0.16	-0.3
3,286,009	+		GFF3231	0.16	+0.8
3,286,009	+		GFF3231	0.16	+0.7
3,286,009	+		GFF3231	0.16	-0.4
3,286,009	+		GFF3231	0.16	-1.1
3,286,016	-		GFF3231	0.16	+0.3
3,286,016	-		GFF3231	0.16	+0.8
3,286,016	-		GFF3231	0.16	-0.7
3,286,016	-		GFF3231	0.16	-2.5
3,286,016	-		GFF3231	0.16	+0.3
3,286,017	-		GFF3231	0.17	+0.4
3,286,017	-		GFF3231	0.17	-0.8
3,286,017	-		GFF3231	0.17	-0.3
3,286,017	-		GFF3231	0.17	-0.8
3,286,027	-		GFF3231	0.18	+0.5
3,286,035	-		GFF3231	0.19	+1.4
3,286,048	-		GFF3231	0.20	+0.9
3,286,050	+		GFF3231	0.21	-1.9
3,286,050	+		GFF3231	0.21	+1.1
3,286,050	+		GFF3231	0.21	-0.5
3,286,050	+		GFF3231	0.21	-0.7
3,286,051	+		GFF3231	0.21	-2.0
3,286,051	+		GFF3231	0.21	+0.3
3,286,051	+		GFF3231	0.21	-0.1
3,286,058	-		GFF3231	0.22	+0.1
3,286,058	-		GFF3231	0.22	-0.5
3,286,058	-		GFF3231	0.22	-0.2
3,286,078	+		GFF3231	0.24	-1.3
3,286,081	+		GFF3231	0.24	-1.0
3,286,095	+		GFF3231	0.26	-1.5
3,286,103	-		GFF3231	0.27	-1.3
3,286,113	+		GFF3231	0.28	-1.2
3,286,116	-		GFF3231	0.29	-0.2
3,286,121	-		GFF3231	0.29	+0.6
3,286,132	+		GFF3231	0.31	-1.6
3,286,140	-		GFF3231	0.32	-0.3
3,286,153	-		GFF3231	0.33	+1.2
3,286,165	+		GFF3231	0.35	-2.4
3,286,165	+		GFF3231	0.35	+0.2
3,286,165	+		GFF3231	0.35	-0.9
3,286,165	+		GFF3231	0.35	+1.0
3,286,167	+		GFF3231	0.35	-0.7
3,286,167	+		GFF3231	0.35	+0.6
3,286,173	-		GFF3231	0.36	-0.0
3,286,175	-		GFF3231	0.36	-0.6
3,286,206	+		GFF3231	0.40	+0.4
3,286,209	-		GFF3231	0.40	+0.1
3,286,211	+		GFF3231	0.40	-1.3
3,286,212	+		GFF3231	0.40	-1.1
3,286,212	+		GFF3231	0.40	+0.1
3,286,217	+		GFF3231	0.41	-0.5
3,286,217	+		GFF3231	0.41	+0.3
3,286,217	+		GFF3231	0.41	-1.1
3,286,217	+		GFF3231	0.41	-1.1
3,286,217	+		GFF3231	0.41	-0.3
3,286,219	-		GFF3231	0.41	-0.5
3,286,219	-		GFF3231	0.41	+0.5
3,286,219	-		GFF3231	0.41	-0.9
3,286,219	-		GFF3231	0.41	-0.9
3,286,225	-		GFF3231	0.42	-1.8
3,286,225	-		GFF3231	0.42	-0.4
3,286,225	-		GFF3231	0.42	-2.1
3,286,225	-		GFF3231	0.42	-0.6
3,286,233	-		GFF3231	0.43	-0.2
3,286,236	+		GFF3231	0.43	-0.3
3,286,236	+		GFF3231	0.43	-0.0
3,286,236	+		GFF3231	0.43	-0.1
3,286,236	+		GFF3231	0.43	-2.3
3,286,236	+		GFF3231	0.43	-2.6
3,286,244	-		GFF3231	0.44	+0.4
3,286,246	+		GFF3231	0.44	-1.2
3,286,246	+		GFF3231	0.44	+0.8
3,286,246	+		GFF3231	0.44	-0.5
3,286,281	+		GFF3231	0.49	+1.0
3,286,289	-		GFF3231	0.50	-0.0
3,286,289	-		GFF3231	0.50	+0.5
3,286,297	+		GFF3231	0.51	+0.1
3,286,302	+		GFF3231	0.51	+0.6
3,286,307	+		GFF3231	0.52	-0.0
3,286,307	+		GFF3231	0.52	-0.8
3,286,312	+		GFF3231	0.52	-1.3
3,286,312	+		GFF3231	0.52	-0.0
3,286,312	+		GFF3231	0.52	-0.1
3,286,312	+		GFF3231	0.52	+1.0
3,286,315	-		GFF3231	0.53	+0.1
3,286,320	-		GFF3231	0.53	+1.1
3,286,329	-		GFF3231	0.54	-0.4
3,286,339	+		GFF3231	0.56	-0.7
3,286,339	+		GFF3231	0.56	-2.8
3,286,339	+		GFF3231	0.56	+0.5
3,286,342	+		GFF3231	0.56	+1.3
3,286,347	-		GFF3231	0.57	-1.2
3,286,347	-		GFF3231	0.57	+0.5
3,286,348	+		GFF3231	0.57	-0.3
3,286,348	+		GFF3231	0.57	-1.5
3,286,349	-		GFF3231	0.57	+0.1
3,286,356	-		GFF3231	0.58	-0.8
3,286,356	-		GFF3231	0.58	-1.7
3,286,356	-		GFF3231	0.58	+0.2
3,286,361	-		GFF3231	0.58	-2.0
3,286,376	+		GFF3231	0.60	-0.8
3,286,384	-		GFF3231	0.61	-1.1
3,286,390	+		GFF3231	0.62	-1.1
3,286,391	+		GFF3231	0.62	-0.2
3,286,395	+		GFF3231	0.62	+0.2
3,286,395	+		GFF3231	0.62	+0.4
3,286,400	+		GFF3231	0.63	+0.1
3,286,400	+		GFF3231	0.63	-1.7
3,286,403	-		GFF3231	0.63	-0.1
3,286,405	+		GFF3231	0.64	+0.4
3,286,405	+		GFF3231	0.64	-0.1
3,286,405	+		GFF3231	0.64	+1.4
3,286,405	+		GFF3231	0.64	+0.5
3,286,405	+		GFF3231	0.64	+0.3
3,286,413	-		GFF3231	0.65	+0.2
3,286,413	-		GFF3231	0.65	-0.0
3,286,417	+		GFF3231	0.65	+0.4
3,286,417	+		GFF3231	0.65	-0.7
3,286,419	+		GFF3231	0.65	+0.1
3,286,420	-		GFF3231	0.65	-2.1
3,286,426	+		GFF3231	0.66	-0.5
3,286,426	+		GFF3231	0.66	-0.2
3,286,426	+		GFF3231	0.66	-0.8
3,286,436	+		GFF3231	0.67	-0.4
3,286,441	+		GFF3231	0.68	+1.0
3,286,441	+		GFF3231	0.68	+0.3
3,286,441	+		GFF3231	0.68	-1.5
3,286,441	+		GFF3231	0.68	-0.8
3,286,441	+		GFF3231	0.68	+0.5
3,286,449	-		GFF3231	0.69	-0.1
3,286,449	-		GFF3231	0.69	+0.9
3,286,449	-		GFF3231	0.69	+0.4
3,286,460	+		GFF3231	0.70	-0.3
3,286,460	+		GFF3231	0.70	-0.6
3,286,460	+		GFF3231	0.70	-1.4
3,286,460	-		GFF3231	0.70	+0.4
3,286,480	-		GFF3231	0.73	-2.6
3,286,510	+		GFF3231	0.76	+0.3
3,286,518	+		GFF3231	0.77	-0.5
3,286,530	+		GFF3231	0.79	-0.3
3,286,538	-		GFF3231	0.80	-0.2
3,286,538	-		GFF3231	0.80	+0.4
3,286,538	-		GFF3231	0.80	-0.4
3,286,538	-		GFF3231	0.80	+1.4
3,286,568	-		GFF3231	0.83	+0.2
3,286,579	+		GFF3231	0.85	-2.0
3,286,579	+		GFF3231	0.85	-0.2
3,286,591	-		GFF3231	0.86	+0.8
3,286,601	+		GFF3231	0.87	-2.9
3,286,611	+		GFF3231	0.89	-0.9
3,286,614	+		GFF3231	0.89	-1.1
3,286,622	-				+0.7
3,286,622	-				+0.5
3,286,653	-				+0.2
3,286,655	+				+0.7
3,286,655	+				-0.0
3,286,658	-				-0.8
3,286,663	-				-0.0
3,286,663	-				-1.1
3,286,704	-				-0.5
3,286,713	+				+0.3
3,286,773	-				+1.6
3,286,773	-				+0.5
3,286,775	+				-0.3
3,286,779	+				-1.0
3,286,779	+				+0.4
3,286,779	+				-0.4
3,286,779	+				-0.7
3,286,787	-				+1.0
3,286,788	-				-1.8
3,286,789	-				-0.3
3,286,799	+				+0.7
3,286,804	+				-1.5
3,286,804	+				-0.2
3,286,804	+				+0.7
3,286,804	+				-1.3
3,286,806	+				-1.3
3,286,806	+				-1.2
3,286,806	+				-0.6
3,286,806	+				+1.2
3,286,806	+				+0.4
3,286,806	+				+0.4
3,286,806	+				+0.0
3,286,806	+				-0.8
3,286,807	-				+0.3
3,286,812	+				-0.7
3,286,812	-				-0.5
3,286,812	-				+0.3
3,286,812	-				+1.5
3,286,812	-				-1.7
3,286,812	-				+1.5
3,286,812	-				-0.2
3,286,812	-				-0.8
3,286,814	-				-0.7
3,286,814	-				+0.3
3,286,814	-				-1.1
3,286,814	-				-0.7
3,286,814	-				+0.6
3,286,814	-				+0.1
3,286,814	-				-0.4
3,286,820	-				+1.1
3,286,830	-				+0.9
3,286,840	+				+0.3
3,286,840	+				+0.3
3,286,840	+				-1.7
3,286,840	+				-0.3
3,286,840	+				-0.3
3,286,840	-				-0.3
3,286,848	-				+0.5
3,286,860	+				-0.8
3,286,868	-				-1.4
3,286,869	+				+0.2
3,286,876	+				+0.5
3,286,876	+				-1.1
3,286,876	+				-0.6
3,286,877	-				-0.3
3,286,877	-				+0.1
3,286,884	-				-0.5
3,286,884	-				-0.4
3,286,884	-				-0.0
3,286,884	-				-0.4
3,286,893	-				-1.6
3,286,902	+				-2.1
3,286,904	-				-0.9
3,286,907	+				+0.4
3,286,910	-				+0.3
3,286,917	-				-0.1
3,286,923	+				-0.5
3,286,923	+				+0.1
3,286,927	-				-0.0
3,286,931	-				-1.2
3,286,931	-				-1.0
3,286,931	-				-1.3
3,286,931	-				-0.8
3,286,986	+				-0.6
3,286,987	+				+0.1
3,286,987	+				+0.6
3,286,987	+				+1.4
3,286,987	+				+0.8
3,286,987	+				+0.5
3,286,988	+				+0.9
3,286,994	+				-1.0
3,286,994	-				+0.3
3,286,994	-				+0.1
3,286,994	-				-3.1
3,286,995	-				+0.7
3,286,995	-				+0.6
3,287,001	-				+0.3
3,287,002	-				-2.0
3,287,012	-				-0.4
3,287,021	+				-0.2
3,287,024	-		GFF3232	0.10	-0.0
3,287,031	-		GFF3232	0.14	-0.7
3,287,034	+		GFF3232	0.15	-1.1
3,287,042	-		GFF3232	0.19	-0.1
3,287,045	+		GFF3232	0.21	-0.1
3,287,104	+		GFF3232	0.50	+0.6
3,287,104	+		GFF3232	0.50	-0.4
3,287,112	+		GFF3232	0.53	+0.1
3,287,113	-		GFF3232	0.54	+0.4
3,287,121	+		GFF3232	0.58	-0.0
3,287,121	+		GFF3232	0.58	-1.2
3,287,121	-		GFF3232	0.58	-0.6
3,287,121	-		GFF3232	0.58	-2.3
3,287,129	+		GFF3232	0.62	-0.0
3,287,137	-		GFF3232	0.66	+1.4
3,287,139	+		GFF3232	0.67	+0.2
3,287,139	+		GFF3232	0.67	-2.2
3,287,140	+		GFF3232	0.67	+0.2
3,287,140	+		GFF3232	0.67	-0.3
3,287,141	+		GFF3232	0.68	+0.3
3,287,148	-		GFF3232	0.71	+0.6
3,287,148	-		GFF3232	0.71	+0.9
3,287,162	+		GFF3232	0.78	-1.5
3,287,162	+		GFF3232	0.78	-0.1
3,287,170	-		GFF3232	0.82	-0.6
3,287,199	+				+1.3
3,287,199	+				+0.7
3,287,199	+				+0.5
3,287,207	-				+0.2
3,287,217	-				-0.2
3,287,217	-				-0.1
3,287,234	+				-0.4
3,287,234	+				-0.5
3,287,235	+				-1.4
3,287,258	-				-0.3
3,287,271	-				+0.5
3,287,273	+				-1.7
3,287,273	+				+0.9
3,287,273	+				-0.5
3,287,273	+				-2.7
3,287,273	+				+0.1
3,287,275	-				-0.7
3,287,281	-				-0.8
3,287,322	-				+0.5
3,287,325	+				-1.5
3,287,330	-				+0.6
3,287,332	+				+0.6
3,287,332	+				-0.8
3,287,333	+				-0.9
3,287,333	+				+0.4
3,287,333	-				-0.3
3,287,341	-				-0.1
3,287,341	-				-0.8
3,287,346	+				-1.8
3,287,351	+				-0.7
3,287,351	+				-0.2
3,287,351	+				-0.1
3,287,359	-				+0.1
3,287,364	-				+0.7
3,287,369	+				+0.1
3,287,374	+				+0.9
3,287,429	+				+0.4
3,287,431	+				-1.5
3,287,437	+				+1.2
3,287,437	+				+0.1
3,287,437	+				+0.1
3,287,437	+				+0.9
3,287,437	+				+1.3
3,287,437	+				-0.3
3,287,437	+				+1.0
3,287,437	-				+0.5
3,287,437	-				+0.1
3,287,445	-				-0.2
3,287,445	-				+0.9
3,287,445	-				+0.2
3,287,456	-				+1.2
3,287,468	-				-0.7
3,287,470	+				-0.5
3,287,478	-				-2.4
3,287,478	-				+0.2
3,287,478	-				-0.1
3,287,478	-				-1.7
3,287,483	-				+0.5
3,287,483	-				-1.7
3,287,483	-				-0.8
3,287,510	+				-0.7
3,287,511	-				+1.1
3,287,518	-		GFF3233	0.15	-2.0
3,287,563	+		GFF3233	0.53	-0.8
3,287,568	+		GFF3233	0.57	+0.1
3,287,583	+		GFF3233	0.70	+0.5
3,287,599	-		GFF3233	0.84	+0.2
3,287,841	+				+0.7
3,287,849	-				-0.9
3,287,849	-				-2.3
3,287,857	+				+0.1
3,287,859	-				-2.0
3,287,876	+				-0.5
3,287,918	+				+0.1
3,287,926	-				+0.9
3,287,937	+				-1.5
3,287,945	+		GFF3234	0.11	-0.1
3,287,945	+		GFF3234	0.11	+0.1
3,287,945	+		GFF3234	0.11	-0.6
3,287,953	-		GFF3234	0.12	-1.4
3,287,953	-		GFF3234	0.12	-1.5
3,287,953	-		GFF3234	0.12	-0.4
3,287,953	-		GFF3234	0.12	-2.8
3,287,974	+		GFF3234	0.15	+0.1
3,287,982	-		GFF3234	0.16	-2.5
3,288,007	-		GFF3234	0.20	-0.9
3,288,014	+		GFF3234	0.21	+1.2
3,288,014	-		GFF3234	0.21	+0.8
3,288,017	+		GFF3234	0.22	-0.0
3,288,025	+		GFF3234	0.23	-0.4
3,288,025	-		GFF3234	0.23	-0.1
3,288,032	-		GFF3234	0.24	+1.6
3,288,032	-		GFF3234	0.24	+1.8
3,288,033	-		GFF3234	0.24	-0.4
3,288,058	-		GFF3234	0.28	+0.5
3,288,058	-		GFF3234	0.28	-1.8
3,288,059	+		GFF3234	0.28	-0.8
3,288,066	+		GFF3234	0.29	+0.3
3,288,081	+		GFF3234	0.31	+0.8
3,288,091	+		GFF3234	0.33	+0.5
3,288,093	+		GFF3234	0.33	+0.0
3,288,101	-		GFF3234	0.34	+1.0
3,288,111	-		GFF3234	0.36	+0.9
3,288,120	-		GFF3234	0.37	-1.0
3,288,122	+		GFF3234	0.37	+0.1
3,288,122	+		GFF3234	0.37	-0.6
3,288,122	+		GFF3234	0.37	-0.4
3,288,122	+		GFF3234	0.37	-0.4
3,288,130	-		GFF3234	0.38	-1.3
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3,288,172	-		GFF3234	0.45	-0.1
3,288,174	+		GFF3234	0.45	-0.4
3,288,174	+		GFF3234	0.45	+1.0
3,288,174	+		GFF3234	0.45	+0.8
3,288,177	-		GFF3234	0.45	-0.5
3,288,179	+		GFF3234	0.46	-0.1
3,288,179	+		GFF3234	0.46	-2.0
3,288,179	+		GFF3234	0.46	-0.5
3,288,179	+		GFF3234	0.46	-0.0
3,288,179	+		GFF3234	0.46	-2.9
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3,288,179	+		GFF3234	0.46	-0.8
3,288,182	-		GFF3234	0.46	+1.5
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3,288,199	-		GFF3234	0.49	-0.5
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