Strain Fitness in Sphingobium sp. HT1-2 around GFF3041

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,115,768	-		GFF3039	0.73	-0.3
3,115,768	-		GFF3039	0.73	+1.3
3,115,770	+		GFF3039	0.73	-0.7
3,115,770	+		GFF3039	0.73	-2.6
3,115,778	-		GFF3039	0.73	+0.0
3,115,778	-		GFF3039	0.73	-0.8
3,115,797	+		GFF3039	0.74	-0.4
3,115,805	-		GFF3039	0.74	-0.5
3,115,862	+		GFF3039	0.76	+0.0
3,115,870	-		GFF3039	0.77	+1.1
3,115,872	+		GFF3039	0.77	+0.4
3,115,872	+		GFF3039	0.77	-2.5
3,115,872	+		GFF3039	0.77	+0.7
3,115,872	+		GFF3039	0.77	+0.2
3,115,880	-		GFF3039	0.77	-0.4
3,115,880	-		GFF3039	0.77	-0.3
3,115,880	-		GFF3039	0.77	-0.3
3,115,880	-		GFF3039	0.77	+0.5
3,115,919	-		GFF3039	0.79	-0.8
3,115,979	-		GFF3039	0.81	-0.9
3,115,981	-		GFF3039	0.81	-0.4
3,116,014	+		GFF3039	0.82	+0.2
3,116,024	+		GFF3039	0.83	-0.0
3,116,049	+		GFF3039	0.84	+0.9
3,116,050	-		GFF3039	0.84	-0.2
3,116,057	-		GFF3039	0.84	-0.8
3,116,071	-		GFF3039	0.85	-1.1
3,116,122	+		GFF3039	0.87	-1.1
3,116,135	+		GFF3039	0.87	-0.8
3,116,135	+		GFF3039	0.87	-1.2
3,116,135	+		GFF3039	0.87	-0.4
3,116,143	+		GFF3039	0.88	-0.6
3,116,143	+		GFF3039	0.88	-1.0
3,116,143	+		GFF3039	0.88	+0.3
3,116,143	+		GFF3039	0.88	-0.9
3,116,143	+		GFF3039	0.88	+0.8
3,116,148	+		GFF3039	0.88	-0.7
3,116,151	-		GFF3039	0.88	+0.3
3,116,151	-		GFF3039	0.88	+0.3
3,116,151	-		GFF3039	0.88	+1.4
3,116,151	-		GFF3039	0.88	+1.4
3,116,155	+		GFF3039	0.88	-2.1
3,116,214	+				-1.1
3,116,215	+				+0.4
3,116,222	-				+0.9
3,116,246	+				+0.2
3,116,254	-				-0.4
3,116,282	+				-0.0
3,116,299	+				+0.7
3,116,310	-				-1.2
3,116,322	+				-0.1
3,116,341	+				-1.9
3,116,341	+				-0.2
3,116,341	+				-1.4
3,116,344	-				-0.4
3,116,346	+				-1.0
3,116,346	+				-2.2
3,116,352	+				-2.2
3,116,352	+				+0.2
3,116,354	-				-1.0
3,116,356	+				-0.8
3,116,357	+				-1.2
3,116,357	+				+0.6
3,116,357	+				-1.4
3,116,357	+				-0.3
3,116,360	-				-2.1
3,116,360	-				-0.3
3,116,362	+				+0.4
3,116,362	+				-0.6
3,116,362	+				+0.4
3,116,365	-				-0.4
3,116,365	-				+0.0
3,116,365	-				+1.1
3,116,365	-				+1.1
3,116,365	-				+0.4
3,116,369	+				-0.6
3,116,369	+				+0.4
3,116,369	+				-0.9
3,116,369	+				-1.4
3,116,369	+				+0.2
3,116,369	+				+0.4
3,116,369	+				-1.2
3,116,369	+				-0.8
3,116,370	-				-0.3
3,116,370	-				-2.4
3,116,370	-				-0.6
3,116,370	-				-1.4
3,116,370	-				-0.0
3,116,370	-				-1.3
3,116,377	-				-1.6
3,116,377	-				+0.5
3,116,377	-				+0.4
3,116,377	-				-0.9
3,116,377	-				-0.2
3,116,377	-				-1.4
3,116,377	-				-1.9
3,116,377	-				-0.3
3,116,377	-				-0.8
3,116,377	-				-1.4
3,116,404	+				-0.7
3,116,404	+				+0.7
3,116,404	+				-0.9
3,116,407	-				-1.1
3,116,407	-				-2.6
3,116,409	+				-0.1
3,116,425	+				-1.6
3,116,461	+				-0.7
3,116,465	+				+0.7
3,116,465	+				-1.4
3,116,469	-				-1.1
3,116,469	-				-1.3
3,116,473	-				-0.1
3,116,480	+				-0.1
3,116,480	+				+0.7
3,116,488	-				-0.4
3,116,488	-				-0.8
3,116,488	-				-1.9
3,116,488	-				-1.1
3,116,490	-				+0.4
3,116,508	+				-2.1
3,116,510	+				+0.0
3,116,510	+				+0.3
3,116,510	+				-1.6
3,116,515	+				+0.1
3,116,518	-				-1.0
3,116,529	+				-0.1
3,116,537	-				-0.7
3,116,546	-				-1.4
3,116,549	+				-0.4
3,116,562	+				-2.6
3,116,570	-				-0.1
3,116,584	+				-2.4
3,116,670	+		GFF3040	0.55	+0.8
3,116,672	+		GFF3040	0.56	+0.4
3,116,680	+		GFF3040	0.61	+0.9
3,116,696	+		GFF3040	0.70	+0.3
3,116,696	+		GFF3040	0.70	+0.4
3,116,696	+		GFF3040	0.70	+0.6
3,116,703	+		GFF3040	0.74	+0.7
3,116,704	-		GFF3040	0.75	+0.6
3,116,704	-		GFF3040	0.75	+0.0
3,116,706	+		GFF3040	0.76	-0.5
3,116,713	+		GFF3040	0.80	+1.0
3,116,713	+		GFF3040	0.80	-0.2
3,116,721	-		GFF3040	0.84	-1.2
3,116,721	-		GFF3040	0.84	-2.7
3,116,735	+				+0.8
3,116,741	+				+0.2
3,116,763	+				+0.3
3,116,766	-				-0.6
3,116,787	+				+0.3
3,116,813	-				-1.6
3,116,847	+				+0.2
3,116,856	-				-0.8
3,116,871	-		GFF3041	0.11	+0.6
3,116,889	-		GFF3041	0.13	-0.0
3,116,905	-		GFF3041	0.15	-0.8
3,116,907	+		GFF3041	0.15	-0.4
3,116,907	+		GFF3041	0.15	-0.2
3,116,907	+		GFF3041	0.15	+0.1
3,116,907	+		GFF3041	0.15	+0.5
3,116,915	-		GFF3041	0.16	+0.2
3,116,917	-		GFF3041	0.16	-0.0
3,116,920	-		GFF3041	0.16	+0.2
3,116,936	-		GFF3041	0.18	+0.4
3,116,944	+		GFF3041	0.19	+0.1
3,116,944	+		GFF3041	0.19	-0.4
3,116,944	+		GFF3041	0.19	+0.4
3,116,949	+		GFF3041	0.19	+0.6
3,116,949	+		GFF3041	0.19	+0.2
3,116,952	-		GFF3041	0.20	+0.4
3,116,957	-		GFF3041	0.20	-1.1
3,116,985	+		GFF3041	0.23	-0.7
3,116,985	+		GFF3041	0.23	+0.6
3,116,993	-		GFF3041	0.24	+0.3
3,116,993	-		GFF3041	0.24	+0.1
3,117,003	-		GFF3041	0.25	-0.3
3,117,003	-		GFF3041	0.25	-1.0
3,117,007	+		GFF3041	0.26	-1.4
3,117,007	-		GFF3041	0.26	-1.6
3,117,025	-		GFF3041	0.27	-0.8
3,117,101	-		GFF3041	0.36	-2.9
3,117,103	+		GFF3041	0.36	-2.1
3,117,103	+		GFF3041	0.36	-2.3
3,117,169	+		GFF3041	0.43	-0.5
3,117,193	-		GFF3041	0.45	+0.1
3,117,207	-		GFF3041	0.47	+1.0
3,117,226	+		GFF3041	0.49	-2.8
3,117,226	+		GFF3041	0.49	+0.3
3,117,226	+		GFF3041	0.49	+0.5
3,117,226	+		GFF3041	0.49	+0.1
3,117,234	-		GFF3041	0.50	-0.0
3,117,237	+		GFF3041	0.50	+1.6
3,117,237	+		GFF3041	0.50	-0.4
3,117,237	+		GFF3041	0.50	-1.3
3,117,237	+		GFF3041	0.50	+0.6
3,117,237	+		GFF3041	0.50	+1.3
3,117,244	+		GFF3041	0.51	-1.3
3,117,245	-		GFF3041	0.51	+0.2
3,117,245	-		GFF3041	0.51	-0.0
3,117,245	-		GFF3041	0.51	-1.6
3,117,245	-		GFF3041	0.51	-0.7
3,117,245	-		GFF3041	0.51	-0.2
3,117,251	-		GFF3041	0.51	+0.8
3,117,252	-		GFF3041	0.52	-0.7
3,117,252	-		GFF3041	0.52	-0.3
3,117,333	-		GFF3041	0.60	-0.3
3,117,353	-		GFF3041	0.62	+0.2
3,117,395	-		GFF3041	0.67	-0.3
3,117,396	-		GFF3041	0.67	-0.8
3,117,415	-		GFF3041	0.69	-0.6
3,117,418	+		GFF3041	0.69	-0.4
3,117,438	+		GFF3041	0.71	-0.5
3,117,507	+		GFF3041	0.79	-0.3
3,117,507	+		GFF3041	0.79	+0.6
3,117,522	+		GFF3041	0.80	+0.8
3,117,530	-		GFF3041	0.81	-1.8
3,117,530	-		GFF3041	0.81	-1.4
3,117,530	-		GFF3041	0.81	-1.0
3,117,530	-		GFF3041	0.81	+0.5
3,117,539	+		GFF3041	0.82	-1.3
3,117,541	+		GFF3041	0.82	-0.4
3,117,541	+		GFF3041	0.82	-1.1
3,117,541	+		GFF3041	0.82	-0.8
3,117,541	+		GFF3041	0.82	-0.1
3,117,546	+		GFF3041	0.83	+0.2
3,117,549	-		GFF3041	0.83	+0.7
3,117,549	-		GFF3041	0.83	-0.8
3,117,549	-		GFF3041	0.83	+0.4
3,117,549	-		GFF3041	0.83	-0.4
3,117,549	-		GFF3041	0.83	-1.0
3,117,549	-		GFF3041	0.83	-0.8
3,117,549	-		GFF3041	0.83	-2.0
3,117,565	+		GFF3041	0.85	-3.2
3,117,573	-		GFF3041	0.86	-0.0
3,117,573	-		GFF3041	0.86	+0.7
3,117,575	+		GFF3041	0.86	-1.2
3,117,575	+		GFF3041	0.86	+0.4
3,117,575	+		GFF3041	0.86	-0.2
3,117,583	-		GFF3041	0.87	-1.1
3,117,583	-		GFF3041	0.87	+0.2
3,117,583	-		GFF3041	0.87	+0.7
3,117,583	-		GFF3041	0.87	-0.1
3,117,590	-		GFF3041	0.87	+1.0
3,117,634	+				+0.7
3,117,638	-				-0.5
3,117,642	-				-1.1
3,117,676	+				-0.4
3,117,676	+				-0.1
3,117,681	+				-1.9
3,117,681	+				-0.6
3,117,681	+				+0.2
3,117,681	+				+0.8
3,117,681	+				+0.8
3,117,681	+				-0.6
3,117,684	+				-0.4
3,117,684	-				+1.0
3,117,684	-				+0.3
3,117,684	-				-0.8
3,117,684	-				+0.5
3,117,684	-				-0.4
3,117,684	-				-0.2
3,117,689	-				+0.1
3,117,689	-				-0.3
3,117,689	-				-0.7
3,117,689	-				+0.5
3,117,689	-				-0.2
3,117,689	-				+0.7
3,117,689	-				-0.9
3,117,700	-				-1.1
3,117,701	+				+0.0
3,117,710	-				-0.1
3,117,710	-				-2.1
3,117,710	-				+0.4
3,117,710	-				-0.9
3,117,710	-				-1.0
3,117,715	-				-1.4
3,117,799	-				-2.9
3,117,847	+				+1.4
3,117,880	+				-2.0
3,117,880	+				-1.1
3,117,880	+				+1.0
3,117,880	+				-1.2
3,117,880	+				-0.8
3,117,880	+				+0.3
3,117,880	+				-2.1
3,117,880	+				-2.1
3,117,880	+				-0.0
3,117,885	+				-0.8
3,117,888	-				-1.7
3,117,888	-				-1.0
3,117,888	-				-0.7
3,117,888	-				-0.3
3,117,927	+				-0.0
3,117,927	+				+0.4
3,117,942	+				-2.1
3,117,947	+				-0.4
3,117,950	-				-2.4
3,117,952	+				-0.7
3,117,952	+				+0.0
3,117,955	-				+0.8
3,117,955	-				-0.5
3,117,955	-				+0.4
3,117,957	+				-1.9
3,117,960	-				+0.5
3,117,960	-				-0.3
3,117,960	-				-1.3
3,118,023	+				+1.2
3,118,047	+				+0.4
3,118,047	+				+0.3
3,118,067	-				-0.9
3,118,074	+				+0.2
3,118,084	-				-0.9
3,118,093	+				+0.1
3,118,101	-		GFF3042	0.10	+0.0
3,118,101	-		GFF3042	0.10	+0.4
3,118,105	+		GFF3042	0.10	+0.0
3,118,129	+		GFF3042	0.12	+0.5
3,118,135	+		GFF3042	0.12	-0.5
3,118,135	+		GFF3042	0.12	-0.1
3,118,135	+		GFF3042	0.12	+1.0
3,118,143	-		GFF3042	0.12	+0.4
3,118,149	-		GFF3042	0.13	-0.8
3,118,152	+		GFF3042	0.13	+0.2
3,118,160	-		GFF3042	0.13	-1.1
3,118,193	+		GFF3042	0.15	-0.0
3,118,198	+		GFF3042	0.15	-2.1
3,118,202	+		GFF3042	0.15	+0.6
3,118,202	+		GFF3042	0.15	-0.3
3,118,216	-		GFF3042	0.16	+1.0
3,118,254	-		GFF3042	0.18	+0.3
3,118,259	+		GFF3042	0.18	-0.5
3,118,260	-		GFF3042	0.18	-0.3
3,118,299	-		GFF3042	0.20	-0.5
3,118,304	+		GFF3042	0.21	+0.6
3,118,329	-		GFF3042	0.22	-2.1
3,118,337	+		GFF3042	0.22	-1.2
3,118,342	+		GFF3042	0.22	-0.8
3,118,342	+		GFF3042	0.22	+0.6
3,118,350	-		GFF3042	0.23	+0.3
3,118,379	-		GFF3042	0.24	-0.1
3,118,413	+		GFF3042	0.26	+0.1
3,118,461	-		GFF3042	0.29	-0.9
3,118,512	-		GFF3042	0.31	-0.6
3,118,517	-		GFF3042	0.31	+0.2
3,118,522	+		GFF3042	0.32	-1.8
3,118,532	+		GFF3042	0.32	+0.9
3,118,540	-		GFF3042	0.33	-0.2
3,118,561	+		GFF3042	0.34	-1.9
3,118,583	-		GFF3042	0.35	+0.2
3,118,600	+		GFF3042	0.36	-0.6
3,118,600	+		GFF3042	0.36	-2.2
3,118,608	-		GFF3042	0.36	-1.6
3,118,608	-		GFF3042	0.36	-0.4
3,118,612	+		GFF3042	0.36	+1.6
3,118,615	-		GFF3042	0.36	+0.5
3,118,615	-		GFF3042	0.36	-0.1
3,118,625	+		GFF3042	0.37	-0.8
3,118,629	+		GFF3042	0.37	-1.4
3,118,629	+		GFF3042	0.37	+0.8
3,118,629	+		GFF3042	0.37	+1.1
3,118,631	+		GFF3042	0.37	+0.1
3,118,653	-		GFF3042	0.38	-1.9
3,118,683	+		GFF3042	0.40	+0.9
3,118,704	+		GFF3042	0.41	+0.4
3,118,706	+		GFF3042	0.41	+0.7