Strain Fitness in Sphingobium sp. HT1-2 around GFF2909

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,970,648	+				+0.8
2,970,683	-				-1.0
2,970,714	+				+0.1
2,970,732	+				-0.5
2,970,739	-				-0.1
2,970,750	+		GFF2908	0.11	-0.1
2,970,763	+		GFF2908	0.13	-0.7
2,970,763	+		GFF2908	0.13	+0.0
2,970,763	+		GFF2908	0.13	-0.7
2,970,763	+		GFF2908	0.13	-0.3
2,970,763	+		GFF2908	0.13	-0.3
2,970,763	+		GFF2908	0.13	+0.1
2,970,763	+		GFF2908	0.13	-1.8
2,970,763	+		GFF2908	0.13	-0.1
2,970,763	+		GFF2908	0.13	+0.4
2,970,763	-		GFF2908	0.13	-1.1
2,970,765	+		GFF2908	0.13	+0.6
2,970,765	+		GFF2908	0.13	+0.2
2,970,765	+		GFF2908	0.13	+0.8
2,970,765	+		GFF2908	0.13	-0.5
2,970,771	-		GFF2908	0.13	-1.7
2,970,771	-		GFF2908	0.13	-1.0
2,970,771	-		GFF2908	0.13	+1.0
2,970,771	-		GFF2908	0.13	-0.2
2,970,771	-		GFF2908	0.13	+0.2
2,970,773	-		GFF2908	0.14	-1.7
2,970,773	-		GFF2908	0.14	-0.7
2,970,773	-		GFF2908	0.14	-0.9
2,970,786	-		GFF2908	0.15	+0.8
2,970,791	+		GFF2908	0.16	-1.4
2,970,791	+		GFF2908	0.16	+0.2
2,970,791	+		GFF2908	0.16	+0.3
2,970,799	-		GFF2908	0.17	-0.3
2,970,799	-		GFF2908	0.17	+1.3
2,970,820	+		GFF2908	0.19	-0.5
2,970,823	-		GFF2908	0.19	-0.0
2,970,828	-		GFF2908	0.20	-0.7
2,970,840	+		GFF2908	0.21	-1.3
2,970,840	+		GFF2908	0.21	+0.6
2,970,844	+		GFF2908	0.22	+1.2
2,970,844	+		GFF2908	0.22	-0.5
2,970,844	+		GFF2908	0.22	-0.3
2,970,848	-		GFF2908	0.22	-0.2
2,970,848	-		GFF2908	0.22	-1.6
2,970,848	-		GFF2908	0.22	-1.0
2,970,852	-		GFF2908	0.23	-0.1
2,970,852	-		GFF2908	0.23	+0.0
2,970,857	+		GFF2908	0.23	-1.0
2,970,860	-		GFF2908	0.24	+0.4
2,970,867	+		GFF2908	0.24	-0.8
2,970,867	+		GFF2908	0.24	-0.2
2,970,867	+		GFF2908	0.24	+0.5
2,970,867	+		GFF2908	0.24	-0.1
2,970,868	+		GFF2908	0.24	-0.1
2,970,868	+		GFF2908	0.24	-0.9
2,970,875	-		GFF2908	0.25	-0.2
2,970,875	-		GFF2908	0.25	-0.3
2,970,875	-		GFF2908	0.25	-0.4
2,970,875	-		GFF2908	0.25	+0.1
2,970,876	-		GFF2908	0.25	+0.8
2,970,877	-		GFF2908	0.25	+0.8
2,970,901	+		GFF2908	0.28	-0.1
2,970,909	-		GFF2908	0.29	-1.0
2,970,936	+		GFF2908	0.32	+0.8
2,970,942	+		GFF2908	0.33	-1.5
2,970,950	-		GFF2908	0.34	+0.3
2,970,960	+		GFF2908	0.35	+0.8
2,970,978	-		GFF2908	0.37	+1.1
2,970,978	-		GFF2908	0.37	+0.6
2,970,978	-		GFF2908	0.37	+0.4
2,970,978	-		GFF2908	0.37	+0.6
2,970,978	-		GFF2908	0.37	-1.2
2,970,985	+		GFF2908	0.38	-0.1
2,970,985	+		GFF2908	0.38	-0.0
2,970,985	+		GFF2908	0.38	-0.5
2,970,985	+		GFF2908	0.38	+0.5
2,970,989	+		GFF2908	0.38	+0.3
2,970,989	+		GFF2908	0.38	-1.0
2,970,993	-		GFF2908	0.39	+0.5
2,971,012	-		GFF2908	0.41	-2.5
2,971,034	-		GFF2908	0.43	+0.0
2,971,034	-		GFF2908	0.43	+1.1
2,971,040	-		GFF2908	0.44	+1.0
2,971,047	+		GFF2908	0.45	+1.0
2,971,047	+		GFF2908	0.45	+0.8
2,971,047	+		GFF2908	0.45	-1.8
2,971,062	+		GFF2908	0.46	-0.1
2,971,062	-		GFF2908	0.46	-0.8
2,971,064	-		GFF2908	0.47	-0.2
2,971,080	-		GFF2908	0.48	-0.8
2,971,113	-		GFF2908	0.52	-1.4
2,971,113	-		GFF2908	0.52	-2.7
2,971,144	+		GFF2908	0.56	+0.0
2,971,144	+		GFF2908	0.56	-0.2
2,971,146	+		GFF2908	0.56	+1.0
2,971,152	-		GFF2908	0.56	-0.3
2,971,152	-		GFF2908	0.56	-2.2
2,971,154	-		GFF2908	0.57	-1.8
2,971,173	+		GFF2908	0.59	-1.2
2,971,181	-		GFF2908	0.60	-0.8
2,971,192	+		GFF2908	0.61	+0.2
2,971,197	+		GFF2908	0.62	-0.9
2,971,197	+		GFF2908	0.62	-0.2
2,971,197	+		GFF2908	0.62	-0.7
2,971,200	-		GFF2908	0.62	-1.8
2,971,205	-		GFF2908	0.62	-0.4
2,971,205	-		GFF2908	0.62	-0.3
2,971,221	+		GFF2908	0.64	+0.8
2,971,224	+		GFF2908	0.65	-0.9
2,971,225	-		GFF2908	0.65	-1.0
2,971,229	-		GFF2908	0.65	+1.1
2,971,229	-		GFF2908	0.65	+0.0
2,971,229	-		GFF2908	0.65	+0.9
2,971,239	-		GFF2908	0.66	-1.0
2,971,239	-		GFF2908	0.66	-0.9
2,971,240	-		GFF2908	0.66	-0.2
2,971,242	+		GFF2908	0.67	+1.0
2,971,242	+		GFF2908	0.67	+0.8
2,971,242	+		GFF2908	0.67	-0.1
2,971,242	+		GFF2908	0.67	+1.3
2,971,242	+		GFF2908	0.67	-1.0
2,971,242	+		GFF2908	0.67	-1.3
2,971,242	+		GFF2908	0.67	-0.5
2,971,242	+		GFF2908	0.67	-1.0
2,971,250	-		GFF2908	0.68	-2.5
2,971,250	-		GFF2908	0.68	+0.1
2,971,250	-		GFF2908	0.68	+0.4
2,971,250	-		GFF2908	0.68	+1.0
2,971,250	-		GFF2908	0.68	+0.1
2,971,250	-		GFF2908	0.68	-1.1
2,971,250	-		GFF2908	0.68	+0.1
2,971,250	-		GFF2908	0.68	-0.6
2,971,300	+		GFF2908	0.73	+0.7
2,971,300	+		GFF2908	0.73	-0.8
2,971,300	+		GFF2908	0.73	+0.6
2,971,307	+		GFF2908	0.74	-1.9
2,971,307	+		GFF2908	0.74	-0.4
2,971,307	+		GFF2908	0.74	+0.0
2,971,307	+		GFF2908	0.74	-0.9
2,971,307	+		GFF2908	0.74	-0.2
2,971,308	-		GFF2908	0.74	-0.1
2,971,315	-		GFF2908	0.75	+1.3
2,971,318	+		GFF2908	0.75	+0.8
2,971,368	+		GFF2908	0.81	+0.1
2,971,368	+		GFF2908	0.81	-0.2
2,971,368	+		GFF2908	0.81	+0.8
2,971,376	-		GFF2908	0.82	-0.1
2,971,376	-		GFF2908	0.82	-0.2
2,971,376	-		GFF2908	0.82	-0.1
2,971,376	-		GFF2908	0.82	+0.7
2,971,379	+		GFF2908	0.82	+0.5
2,971,406	+		GFF2908	0.85	-1.4
2,971,406	+		GFF2908	0.85	+1.9
2,971,406	+		GFF2908	0.85	+0.3
2,971,406	+		GFF2908	0.85	+0.5
2,971,406	+		GFF2908	0.85	-0.5
2,971,406	-		GFF2908	0.85	+0.1
2,971,412	-		GFF2908	0.86	+0.8
2,971,412	-		GFF2908	0.86	+0.5
2,971,414	-		GFF2908	0.86	-1.4
2,971,446	-		GFF2908	0.90	+0.1
2,971,446	-		GFF2908	0.90	-1.5
2,971,457	+				-0.9
2,971,457	+				-2.0
2,971,457	+				-0.2
2,971,457	+				+0.2
2,971,457	+				-0.0
2,971,457	+				-1.0
2,971,457	+				+1.2
2,971,457	+				-1.7
2,971,465	-				+0.7
2,971,465	-				-1.1
2,971,465	-				-1.4
2,971,465	-				+0.8
2,971,465	-				-0.7
2,971,467	+				+0.6
2,971,467	+				-0.1
2,971,475	-				-0.3
2,971,475	-				-0.2
2,971,475	-				-0.8
2,971,475	-				+0.8
2,971,475	-				-0.4
2,971,495	-				+1.0
2,971,500	-				+1.1
2,971,512	-				+0.4
2,971,512	-				-1.3
2,971,548	+				-1.1
2,971,551	-				-0.8
2,971,582	+				-1.0
2,971,594	+				-0.2
2,971,601	+				+0.1
2,971,604	-				-1.2
2,971,625	-				-0.2
2,971,629	+				+0.5
2,971,637	-				+0.2
2,971,651	+				+0.2
2,971,652	+				-0.2
2,971,658	-				+0.1
2,971,658	-				+0.9
2,971,659	-				+0.1
2,971,659	-				-0.4
2,971,683	-				+0.2
2,971,683	-				+0.2
2,971,695	-				-1.3
2,971,705	-				+1.2
2,971,705	-				-1.4
2,971,709	-				-1.7
2,971,709	-				-1.5
2,971,710	-				-0.8
2,971,711	+				+1.1
2,971,713	+				-1.0
2,971,715	+				+0.1
2,971,715	+				-0.3
2,971,715	+				-2.0
2,971,719	-				-0.0
2,971,721	-				-0.5
2,971,723	-				-1.9
2,971,732	-				+1.3
2,971,741	+				+1.1
2,971,759	-				-0.4
2,971,828	+				-2.5
2,971,836	+				-0.5
2,971,861	+				-3.2
2,971,861	+				+0.5
2,971,866	+				+0.4
2,971,869	-				+0.7
2,971,874	-		GFF2909	0.10	-1.8
2,971,874	-		GFF2909	0.10	+0.5
2,971,901	+		GFF2909	0.11	-1.1
2,971,919	+		GFF2909	0.12	-0.2
2,971,931	-		GFF2909	0.13	+1.2
2,971,938	-		GFF2909	0.13	-2.4
2,971,947	+		GFF2909	0.13	+1.8
2,971,949	+		GFF2909	0.13	-1.9
2,971,959	+		GFF2909	0.14	-0.8
2,971,968	-		GFF2909	0.14	+0.3
2,971,986	-		GFF2909	0.15	+0.1
2,971,986	-		GFF2909	0.15	+0.2
2,971,989	-		GFF2909	0.15	-1.1
2,971,998	+		GFF2909	0.15	-0.7
2,972,011	+		GFF2909	0.16	-0.5
2,972,011	+		GFF2909	0.16	+0.3
2,972,011	+		GFF2909	0.16	-0.1
2,972,021	+		GFF2909	0.16	-1.7
2,972,058	-		GFF2909	0.18	-1.3
2,972,068	+		GFF2909	0.18	-0.8
2,972,068	+		GFF2909	0.18	+0.3
2,972,076	-		GFF2909	0.19	+0.5
2,972,076	-		GFF2909	0.19	-0.2
2,972,076	-		GFF2909	0.19	-0.4
2,972,076	-		GFF2909	0.19	-0.4
2,972,086	-		GFF2909	0.19	+1.4
2,972,103	+		GFF2909	0.20	-0.2
2,972,110	+		GFF2909	0.20	-0.2
2,972,110	+		GFF2909	0.20	-0.0
2,972,110	+		GFF2909	0.20	-0.1
2,972,111	-		GFF2909	0.20	+0.3
2,972,111	-		GFF2909	0.20	-0.8
2,972,111	-		GFF2909	0.20	-2.3
2,972,118	-		GFF2909	0.21	-0.4
2,972,118	-		GFF2909	0.21	+0.8
2,972,118	-		GFF2909	0.21	-0.2
2,972,118	-		GFF2909	0.21	+1.6
2,972,118	-		GFF2909	0.21	-0.5
2,972,118	-		GFF2909	0.21	-0.7
2,972,118	-		GFF2909	0.21	+0.1
2,972,118	-		GFF2909	0.21	-0.1
2,972,136	+		GFF2909	0.21	-0.1
2,972,136	+		GFF2909	0.21	-1.2
2,972,138	+		GFF2909	0.21	-1.2
2,972,146	-		GFF2909	0.22	-1.4
2,972,146	-		GFF2909	0.22	+0.2
2,972,156	-		GFF2909	0.22	-1.3
2,972,156	-		GFF2909	0.22	-0.4
2,972,161	-		GFF2909	0.22	-1.4
2,972,163	+		GFF2909	0.23	+0.3
2,972,163	+		GFF2909	0.23	+0.2
2,972,167	-		GFF2909	0.23	+0.2
2,972,171	-		GFF2909	0.23	-0.4
2,972,171	-		GFF2909	0.23	+0.9
2,972,171	-		GFF2909	0.23	-0.4
2,972,187	-		GFF2909	0.24	+1.0
2,972,237	+		GFF2909	0.26	-1.7
2,972,247	+		GFF2909	0.26	-3.0
2,972,252	+		GFF2909	0.26	+1.0
2,972,257	+		GFF2909	0.27	-1.0
2,972,257	+		GFF2909	0.27	+0.1
2,972,262	+		GFF2909	0.27	+1.1
2,972,262	+		GFF2909	0.27	-2.5
2,972,265	-		GFF2909	0.27	-0.6
2,972,269	+		GFF2909	0.27	-1.0
2,972,270	-		GFF2909	0.27	+0.2
2,972,270	-		GFF2909	0.27	-0.4
2,972,270	-		GFF2909	0.27	-0.1
2,972,270	-		GFF2909	0.27	+0.7
2,972,270	-		GFF2909	0.27	-0.5
2,972,278	-		GFF2909	0.27	-2.9
2,972,278	-		GFF2909	0.27	+0.1
2,972,285	+		GFF2909	0.28	-1.5
2,972,293	-		GFF2909	0.28	-0.3
2,972,295	+		GFF2909	0.28	+0.1
2,972,295	+		GFF2909	0.28	+1.0
2,972,295	+		GFF2909	0.28	-0.6
2,972,295	+		GFF2909	0.28	-0.2
2,972,295	+		GFF2909	0.28	-0.8
2,972,295	+		GFF2909	0.28	+0.1
2,972,295	+		GFF2909	0.28	+0.5
2,972,303	-		GFF2909	0.29	-0.4
2,972,303	-		GFF2909	0.29	-1.4
2,972,303	-		GFF2909	0.29	-0.7
2,972,303	-		GFF2909	0.29	+0.4
2,972,303	-		GFF2909	0.29	+0.8
2,972,303	-		GFF2909	0.29	-0.1
2,972,303	-		GFF2909	0.29	-0.8
2,972,303	-		GFF2909	0.29	-0.4
2,972,303	-		GFF2909	0.29	-1.1
2,972,303	-		GFF2909	0.29	+1.3
2,972,303	-		GFF2909	0.29	-1.2
2,972,303	-		GFF2909	0.29	-1.4
2,972,319	+		GFF2909	0.29	+0.5
2,972,323	-		GFF2909	0.29	-1.1
2,972,355	+		GFF2909	0.31	+1.1
2,972,355	+		GFF2909	0.31	+0.0
2,972,355	-		GFF2909	0.31	-0.3
2,972,373	+		GFF2909	0.32	+0.8
2,972,373	+		GFF2909	0.32	+0.5
2,972,381	-		GFF2909	0.32	-0.8
2,972,391	-		GFF2909	0.32	-0.5
2,972,405	+		GFF2909	0.33	-0.8
2,972,405	+		GFF2909	0.33	-1.3
2,972,405	+		GFF2909	0.33	+0.3
2,972,411	+		GFF2909	0.33	-0.4
2,972,413	-		GFF2909	0.33	+0.8
2,972,413	-		GFF2909	0.33	-2.0
2,972,413	-		GFF2909	0.33	-0.6
2,972,413	-		GFF2909	0.33	+1.2
2,972,413	-		GFF2909	0.33	-1.8
2,972,413	-		GFF2909	0.33	+0.4
2,972,413	-		GFF2909	0.33	-2.7
2,972,413	-		GFF2909	0.33	-2.1
2,972,413	-		GFF2909	0.33	-0.1
2,972,417	+		GFF2909	0.33	-0.9
2,972,419	-		GFF2909	0.34	-1.5
2,972,419	-		GFF2909	0.34	-1.4
2,972,462	+		GFF2909	0.35	-0.4
2,972,467	+		GFF2909	0.36	+0.6
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