Strain Fitness in Sphingobium sp. HT1-2 around GFF2860

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,916,704	-		GFF2859	0.24	-0.4
2,916,734	+		GFF2859	0.27	+0.0
2,916,734	-		GFF2859	0.27	-0.5
2,916,742	-		GFF2859	0.27	+0.5
2,916,744	-		GFF2859	0.27	-2.6
2,916,756	+		GFF2859	0.28	-0.2
2,916,756	+		GFF2859	0.28	+0.7
2,916,771	+		GFF2859	0.30	-0.9
2,916,771	+		GFF2859	0.30	-1.0
2,916,771	+		GFF2859	0.30	-0.5
2,916,771	+		GFF2859	0.30	-2.0
2,916,771	+		GFF2859	0.30	-0.8
2,916,771	+		GFF2859	0.30	-2.6
2,916,771	+		GFF2859	0.30	-0.4
2,916,779	-		GFF2859	0.30	-1.5
2,916,779	-		GFF2859	0.30	+0.6
2,916,779	-		GFF2859	0.30	-0.1
2,916,779	-		GFF2859	0.30	-2.0
2,916,779	-		GFF2859	0.30	+0.7
2,916,783	-		GFF2859	0.30	+0.4
2,916,797	-		GFF2859	0.31	-0.7
2,916,812	+		GFF2859	0.33	+0.7
2,916,812	+		GFF2859	0.33	-0.2
2,916,819	-		GFF2859	0.33	-0.7
2,916,824	-		GFF2859	0.34	+0.3
2,916,837	+		GFF2859	0.35	-2.2
2,916,841	-		GFF2859	0.35	+1.0
2,916,859	+		GFF2859	0.36	+0.1
2,916,871	+		GFF2859	0.37	-0.6
2,916,876	+		GFF2859	0.38	+1.3
2,916,883	+		GFF2859	0.38	+0.3
2,916,892	-		GFF2859	0.39	+0.3
2,916,898	+		GFF2859	0.39	-0.1
2,916,899	+		GFF2859	0.39	-1.8
2,916,904	+		GFF2859	0.40	+0.6
2,916,906	-		GFF2859	0.40	+0.1
2,916,912	-		GFF2859	0.40	-1.6
2,916,912	-		GFF2859	0.40	+0.3
2,916,918	+		GFF2859	0.41	+0.3
2,916,923	+		GFF2859	0.41	+1.0
2,916,926	-		GFF2859	0.41	-0.8
2,916,926	-		GFF2859	0.41	-1.7
2,916,926	-		GFF2859	0.41	+0.1
2,916,931	-		GFF2859	0.42	-2.3
2,916,931	-		GFF2859	0.42	-1.0
2,916,943	-		GFF2859	0.43	+0.2
2,916,952	+		GFF2859	0.43	-0.2
2,916,960	-		GFF2859	0.44	-0.5
2,916,976	+		GFF2859	0.45	-1.3
2,916,976	+		GFF2859	0.45	+0.0
2,916,976	+		GFF2859	0.45	-0.7
2,916,984	-		GFF2859	0.46	-0.0
2,916,984	-		GFF2859	0.46	+0.5
2,916,985	-		GFF2859	0.46	-0.5
2,916,987	+		GFF2859	0.46	-1.3
2,916,987	+		GFF2859	0.46	-1.6
2,917,027	-		GFF2859	0.49	-2.5
2,917,042	-		GFF2859	0.50	-1.1
2,917,044	+		GFF2859	0.50	+0.7
2,917,044	+		GFF2859	0.50	-0.4
2,917,070	-		GFF2859	0.52	-0.1
2,917,078	+		GFF2859	0.53	-0.8
2,917,079	+		GFF2859	0.53	-2.7
2,917,087	-		GFF2859	0.54	+0.5
2,917,087	-		GFF2859	0.54	+0.7
2,917,105	-		GFF2859	0.55	+1.1
2,917,123	+		GFF2859	0.56	-0.6
2,917,123	+		GFF2859	0.56	+1.2
2,917,131	-		GFF2859	0.57	+0.0
2,917,131	-		GFF2859	0.57	-0.6
2,917,165	+		GFF2859	0.60	-0.3
2,917,208	-		GFF2859	0.63	+1.4
2,917,212	-		GFF2859	0.63	-1.3
2,917,225	+		GFF2859	0.64	-0.2
2,917,225	+		GFF2859	0.64	-1.9
2,917,233	-		GFF2859	0.65	-1.0
2,917,233	-		GFF2859	0.65	-1.3
2,917,233	-		GFF2859	0.65	-0.4
2,917,233	-		GFF2859	0.65	+0.2
2,917,233	-		GFF2859	0.65	-0.9
2,917,255	+		GFF2859	0.67	-0.4
2,917,303	-		GFF2859	0.70	+0.5
2,917,322	+		GFF2859	0.72	+0.6
2,917,335	-		GFF2859	0.73	+0.6
2,917,337	+		GFF2859	0.73	-0.5
2,917,337	+		GFF2859	0.73	+0.7
2,917,345	-		GFF2859	0.73	+0.6
2,917,345	-		GFF2859	0.73	+0.1
2,917,345	-		GFF2859	0.73	+0.7
2,917,345	-		GFF2859	0.73	-0.5
2,917,345	-		GFF2859	0.73	-0.7
2,917,361	-		GFF2859	0.75	-0.0
2,917,439	+		GFF2859	0.81	+0.2
2,917,439	+		GFF2859	0.81	+0.1
2,917,447	-		GFF2859	0.81	-1.2
2,917,492	+		GFF2859	0.85	+0.7
2,917,498	+		GFF2859	0.85	-1.8
2,917,498	+		GFF2859	0.85	+0.6
2,917,498	+		GFF2859	0.85	-0.5
2,917,498	+		GFF2859	0.85	+0.7
2,917,498	+		GFF2859	0.85	-0.9
2,917,498	+		GFF2859	0.85	+0.6
2,917,498	+		GFF2859	0.85	-0.9
2,917,498	+		GFF2859	0.85	-0.5
2,917,498	+		GFF2859	0.85	+0.0
2,917,506	-		GFF2859	0.86	-1.9
2,917,506	-		GFF2859	0.86	-1.8
2,917,506	-		GFF2859	0.86	+0.5
2,917,506	-		GFF2859	0.86	-2.5
2,917,506	-		GFF2859	0.86	-0.6
2,917,506	-		GFF2859	0.86	+0.9
2,917,506	-		GFF2859	0.86	-1.1
2,917,506	-		GFF2859	0.86	-0.3
2,917,506	-		GFF2859	0.86	+1.4
2,917,515	+		GFF2859	0.87	+1.3
2,917,534	+		GFF2859	0.88	-2.1
2,917,534	+		GFF2859	0.88	-2.0
2,917,537	-		GFF2859	0.88	-1.1
2,917,542	-		GFF2859	0.89	+0.3
2,917,542	-		GFF2859	0.89	+0.8
2,917,566	-				-0.4
2,917,576	-				-0.5
2,917,603	+				+0.3
2,917,603	+				-0.2
2,917,603	+				+0.6
2,917,606	-				+0.2
2,917,608	+				-2.0
2,917,608	+				+0.3
2,917,608	+				-0.8
2,917,611	-				+0.9
2,917,611	-				-1.0
2,917,611	-				+1.3
2,917,616	+				+0.5
2,917,616	-				-0.1
2,917,618	+				-0.2
2,917,624	-				-1.8
2,917,631	-				-0.3
2,917,635	+				+0.7
2,917,635	+				+1.0
2,917,635	+				-2.0
2,917,635	+				-0.6
2,917,637	+				-0.3
2,917,637	+				+0.2
2,917,637	+				-1.3
2,917,637	+				-0.4
2,917,637	+				+0.5
2,917,643	-				-1.4
2,917,645	-				-2.1
2,917,645	-				-0.7
2,917,650	-				-0.1
2,917,756	+		GFF2860	0.14	-2.7
2,917,759	-		GFF2860	0.15	-1.3
2,917,762	-		GFF2860	0.16	-0.4
2,917,764	-		GFF2860	0.16	-1.0
2,917,809	+		GFF2860	0.26	+0.7
2,917,815	-		GFF2860	0.28	+0.0
2,917,815	-		GFF2860	0.28	-1.0
2,917,817	-		GFF2860	0.28	-1.2
2,917,817	-		GFF2860	0.28	-1.4
2,917,817	-		GFF2860	0.28	+0.6
2,917,844	+		GFF2860	0.34	+0.7
2,917,847	+		GFF2860	0.35	-0.5
2,917,847	+		GFF2860	0.35	+1.3
2,917,860	-		GFF2860	0.38	-1.2
2,917,860	-		GFF2860	0.38	+1.0
2,917,865	+		GFF2860	0.39	-0.1
2,917,865	+		GFF2860	0.39	-0.9
2,917,865	+		GFF2860	0.39	-2.5
2,917,865	+		GFF2860	0.39	-0.8
2,917,865	+		GFF2860	0.39	-0.3
2,917,865	+		GFF2860	0.39	-1.2
2,917,865	+		GFF2860	0.39	-0.5
2,917,865	+		GFF2860	0.39	-1.7
2,917,865	+		GFF2860	0.39	+1.4
2,917,873	-		GFF2860	0.41	-1.1
2,917,873	-		GFF2860	0.41	+0.6
2,917,873	-		GFF2860	0.41	+1.1
2,917,882	+		GFF2860	0.43	+0.5
2,917,884	+		GFF2860	0.43	+1.0
2,917,890	-		GFF2860	0.45	-1.0
2,917,890	-		GFF2860	0.45	-0.5
2,917,918	+		GFF2860	0.51	-1.0
2,917,949	+		GFF2860	0.58	+0.1
2,917,954	+		GFF2860	0.59	-1.2
2,917,954	+		GFF2860	0.59	-0.4
2,917,957	-		GFF2860	0.60	-0.2
2,917,957	-		GFF2860	0.60	-0.7
2,917,962	-		GFF2860	0.61	-0.1
2,917,962	-		GFF2860	0.61	-1.0
2,917,962	-		GFF2860	0.61	-0.5
2,917,966	+		GFF2860	0.62	+0.7
2,917,966	+		GFF2860	0.62	-0.3
2,917,966	+		GFF2860	0.62	-0.6
2,917,974	-		GFF2860	0.64	-2.5
2,917,976	+		GFF2860	0.64	+0.8
2,917,976	+		GFF2860	0.64	-0.2
2,917,978	+		GFF2860	0.65	+0.4
2,917,984	-		GFF2860	0.66	-1.5
2,917,984	-		GFF2860	0.66	-0.8
2,917,984	-		GFF2860	0.66	-1.7
2,918,008	+		GFF2860	0.72	-0.9
2,918,008	+		GFF2860	0.72	-0.6
2,918,008	+		GFF2860	0.72	-1.6
2,918,010	-		GFF2860	0.72	-0.5
2,918,016	-		GFF2860	0.74	-0.5
2,918,016	-		GFF2860	0.74	-0.1
2,918,016	-		GFF2860	0.74	+0.2
2,918,016	-		GFF2860	0.74	-0.3
2,918,016	-		GFF2860	0.74	+0.1
2,918,016	-		GFF2860	0.74	-2.3
2,918,057	-		GFF2860	0.83	-0.8
2,918,057	-		GFF2860	0.83	-1.2
2,918,059	+		GFF2860	0.83	-0.8
2,918,059	+		GFF2860	0.83	+0.4
2,918,059	+		GFF2860	0.83	-0.9
2,918,059	+		GFF2860	0.83	-0.2
2,918,059	+		GFF2860	0.83	-0.6
2,918,067	-		GFF2860	0.85	-1.7
2,918,067	-		GFF2860	0.85	+1.4
2,918,067	-		GFF2860	0.85	+0.3
2,918,067	-		GFF2860	0.85	+0.6
2,918,067	-		GFF2860	0.85	-0.1
2,918,067	-		GFF2860	0.85	+0.8
2,918,067	-		GFF2860	0.85	+0.7
2,918,067	-		GFF2860	0.85	+0.1
2,918,067	-		GFF2860	0.85	-1.0
2,918,067	-		GFF2860	0.85	-0.3
2,918,067	-		GFF2860	0.85	+0.0
2,918,070	-		GFF2860	0.86	-0.1
2,918,074	+		GFF2860	0.87	-0.2
2,918,163	+				-1.8
2,918,194	+				+0.7
2,918,231	+		GFF2861	0.11	-1.5
2,918,234	-		GFF2861	0.11	-0.5
2,918,234	-		GFF2861	0.11	+0.1
2,918,236	+		GFF2861	0.11	-1.0
2,918,241	+		GFF2861	0.12	+0.3
2,918,241	+		GFF2861	0.12	-1.4
2,918,241	+		GFF2861	0.12	+0.3
2,918,246	+		GFF2861	0.12	+1.0
2,918,246	+		GFF2861	0.12	-0.2
2,918,246	+		GFF2861	0.12	-1.5
2,918,246	+		GFF2861	0.12	-1.8
2,918,249	-		GFF2861	0.13	-0.2
2,918,249	-		GFF2861	0.13	+0.5
2,918,249	-		GFF2861	0.13	-0.6
2,918,249	-		GFF2861	0.13	-1.0
2,918,249	-		GFF2861	0.13	+0.0
2,918,249	-		GFF2861	0.13	+0.9
2,918,251	+		GFF2861	0.13	-1.7
2,918,251	+		GFF2861	0.13	-0.4
2,918,254	-		GFF2861	0.13	-0.5
2,918,254	-		GFF2861	0.13	-0.1
2,918,254	-		GFF2861	0.13	-0.2
2,918,254	-		GFF2861	0.13	-0.7
2,918,254	-		GFF2861	0.13	-0.4
2,918,254	-		GFF2861	0.13	+1.0
2,918,259	-		GFF2861	0.14	-0.4
2,918,259	-		GFF2861	0.14	-0.7
2,918,265	+		GFF2861	0.14	+0.7
2,918,265	+		GFF2861	0.14	+0.9
2,918,273	-		GFF2861	0.15	+0.2
2,918,273	-		GFF2861	0.15	-1.4
2,918,273	-		GFF2861	0.15	+0.3
2,918,278	+		GFF2861	0.16	-0.9
2,918,286	+		GFF2861	0.17	-0.2
2,918,297	+		GFF2861	0.18	-0.5
2,918,305	-		GFF2861	0.19	-2.0
2,918,310	-		GFF2861	0.19	-1.1
2,918,310	-		GFF2861	0.19	-1.4
2,918,310	-		GFF2861	0.19	+2.0
2,918,310	-		GFF2861	0.19	-1.7
2,918,310	-		GFF2861	0.19	-2.4
2,918,310	-		GFF2861	0.19	-0.5
2,918,338	-		GFF2861	0.22	+0.1
2,918,340	+		GFF2861	0.23	-1.0
2,918,348	-		GFF2861	0.23	-0.3
2,918,366	+		GFF2861	0.25	+0.6
2,918,366	+		GFF2861	0.25	-0.0
2,918,370	+		GFF2861	0.26	-1.4
2,918,374	-		GFF2861	0.26	-0.3
2,918,374	-		GFF2861	0.26	-1.2
2,918,374	-		GFF2861	0.26	+0.7
2,918,388	-		GFF2861	0.28	+1.2
2,918,388	-		GFF2861	0.28	-2.6
2,918,399	+		GFF2861	0.29	+1.0
2,918,399	-		GFF2861	0.29	-2.1
2,918,407	-		GFF2861	0.30	-0.5
2,918,442	+		GFF2861	0.34	-1.0
2,918,442	+		GFF2861	0.34	-0.1
2,918,452	+		GFF2861	0.35	+1.0
2,918,457	+		GFF2861	0.35	-3.0
2,918,457	+		GFF2861	0.35	+1.3
2,918,457	+		GFF2861	0.35	-2.0
2,918,460	-		GFF2861	0.35	-0.6
2,918,462	+		GFF2861	0.36	+0.8
2,918,465	-		GFF2861	0.36	-1.2
2,918,477	+		GFF2861	0.37	+0.1
2,918,531	-		GFF2861	0.43	+0.9
2,918,550	-		GFF2861	0.45	-0.4
2,918,560	-		GFF2861	0.46	+0.1
2,918,592	+		GFF2861	0.50	-0.2
2,918,610	+		GFF2861	0.52	-0.3
2,918,612	-		GFF2861	0.52	-0.8
2,918,617	-		GFF2861	0.52	-1.4
2,918,618	-		GFF2861	0.53	-0.0
2,918,618	-		GFF2861	0.53	+0.8
2,918,630	+		GFF2861	0.54	-1.0
2,918,637	-		GFF2861	0.55	+0.1
2,918,638	+		GFF2861	0.55	+0.8
2,918,647	+		GFF2861	0.56	-0.8
2,918,647	+		GFF2861	0.56	+0.3
2,918,647	+		GFF2861	0.56	-0.7
2,918,648	-		GFF2861	0.56	-0.4
2,918,648	-		GFF2861	0.56	-1.1
2,918,648	-		GFF2861	0.56	+0.5
2,918,653	+		GFF2861	0.56	+0.9
2,918,653	+		GFF2861	0.56	-0.8
2,918,653	+		GFF2861	0.56	+0.8
2,918,658	+		GFF2861	0.57	+1.7
2,918,666	-		GFF2861	0.58	-1.0
2,918,676	-		GFF2861	0.59	-1.4
2,918,679	+		GFF2861	0.59	-0.3
2,918,679	+		GFF2861	0.59	+0.6
2,918,708	-		GFF2861	0.62	+0.5
2,918,733	-		GFF2861	0.65	-0.6
2,918,735	+		GFF2861	0.65	-0.4
2,918,747	-		GFF2861	0.66	-0.9
2,918,757	+		GFF2861	0.68	+0.1
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2,918,757	-		GFF2861	0.68	-0.4
2,918,765	-		GFF2861	0.68	-2.3
2,918,816	-		GFF2861	0.74	-1.4
2,918,820	-		GFF2861	0.74	-0.3
2,918,836	+		GFF2861	0.76	-1.6
2,918,844	+		GFF2861	0.77	+0.3
2,918,874	+		GFF2861	0.80	-0.6
2,918,874	+		GFF2861	0.80	-0.4
2,918,874	+		GFF2861	0.80	-0.8
2,918,874	+		GFF2861	0.80	-0.9
2,918,874	+		GFF2861	0.80	+0.4
2,918,874	+		GFF2861	0.80	-1.1
2,918,874	+		GFF2861	0.80	+0.2
2,918,874	+		GFF2861	0.80	+0.3
2,918,874	+		GFF2861	0.80	+1.1
2,918,874	+		GFF2861	0.80	-0.0
2,918,874	+		GFF2861	0.80	+0.8
2,918,874	+		GFF2861	0.80	+0.3
2,918,874	+		GFF2861	0.80	+0.9
2,918,874	+		GFF2861	0.80	+1.6
2,918,874	+		GFF2861	0.80	-0.6
2,918,874	+		GFF2861	0.80	-0.9
2,918,881	+		GFF2861	0.81	-0.1
2,918,881	+		GFF2861	0.81	-2.0
2,918,881	+		GFF2861	0.81	-0.9
2,918,881	+		GFF2861	0.81	-1.8
2,918,881	+		GFF2861	0.81	+0.9
2,918,881	+		GFF2861	0.81	-1.3
2,918,881	+		GFF2861	0.81	-0.9
2,918,881	+		GFF2861	0.81	-0.7
2,918,881	+		GFF2861	0.81	-2.9
2,918,881	+		GFF2861	0.81	-0.5
2,918,881	+		GFF2861	0.81	+0.1
2,918,881	+		GFF2861	0.81	-0.1
2,918,882	-		GFF2861	0.81	-1.3
2,918,882	-		GFF2861	0.81	-3.4
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	+0.2
2,918,882	-		GFF2861	0.81	-0.6
2,918,882	-		GFF2861	0.81	-2.0
2,918,882	-		GFF2861	0.81	-0.4
2,918,882	-		GFF2861	0.81	-1.5
2,918,882	-		GFF2861	0.81	-0.7
2,918,882	-		GFF2861	0.81	+0.4
2,918,882	-		GFF2861	0.81	+0.6
2,918,882	-		GFF2861	0.81	-0.4
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	-0.2
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2,918,882	-		GFF2861	0.81	-1.1
2,918,882	-		GFF2861	0.81	-0.1
2,918,882	-		GFF2861	0.81	+0.1
2,918,882	-		GFF2861	0.81	+0.1
2,918,882	-		GFF2861	0.81	-0.1
2,918,882	-		GFF2861	0.81	+0.5
2,918,882	-		GFF2861	0.81	-0.1
2,918,882	-		GFF2861	0.81	-0.3
2,918,889	-		GFF2861	0.82	+0.1
2,918,889	-		GFF2861	0.82	+0.1
2,918,889	-		GFF2861	0.82	-0.6
2,918,889	-		GFF2861	0.82	-2.5
2,918,889	-		GFF2861	0.82	-0.9
2,918,889	-		GFF2861	0.82	-1.0
2,918,889	-		GFF2861	0.82	-0.7
2,918,894	-		GFF2861	0.82	-0.1
2,918,894	-		GFF2861	0.82	-0.1
2,918,905	+		GFF2861	0.83	-0.2
2,918,905	+		GFF2861	0.83	-1.0
2,918,942	+		GFF2861	0.87	-1.4
2,918,942	+		GFF2861	0.87	-0.2
2,918,942	+		GFF2861	0.87	+0.2
2,918,942	+		GFF2861	0.87	-2.2
2,918,942	+		GFF2861	0.87	-0.6
2,918,942	+		GFF2861	0.87	-0.3
2,918,942	+		GFF2861	0.87	-1.5
2,918,942	+		GFF2861	0.87	+0.5
2,918,942	+		GFF2861	0.87	-0.1
2,918,942	+		GFF2861	0.87	-0.7
2,918,942	+		GFF2861	0.87	+1.7
2,918,950	-		GFF2861	0.88	-1.3
2,918,950	-		GFF2861	0.88	+0.4
2,918,950	-		GFF2861	0.88	+0.1
2,918,995	-				-0.8
2,919,062	+				-0.4
2,919,067	+				+0.5
2,919,068	-				-0.7
2,919,072	+				-1.1
2,919,075	-				-2.0
2,919,083	+				-2.6
2,919,083	+				-0.0
2,919,088	+				-1.9
2,919,088	+				-1.8
2,919,088	+				+0.6
2,919,088	+				+0.5
2,919,088	+				+0.2
2,919,089	-				+0.9
2,919,096	-				-1.3
2,919,101	+				+0.5
2,919,106	+				-1.5
2,919,106	+				-2.5
2,919,114	-				-1.0
2,919,114	-				-0.2
2,919,114	-				+0.0
2,919,116	-				+0.2
2,919,119	-				+0.3
2,919,130	+				+0.2