Strain Fitness in Sphingobium sp. HT1-2 around GFF280

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF277 and GFF278 overlap by 1 nucleotidesGFF278 and GFF279 overlap by 11 nucleotidesGFF279 and GFF280 overlap by 4 nucleotidesGFF280 and GFF281 are separated by 61 nucleotidesGFF281 and GFF282 are separated by 56 nucleotides GFF277 - hypothetical protein, at 272,948 to 273,352 GFF277 GFF278 - hypothetical protein, at 273,352 to 273,663 GFF278 GFF279 - hypothetical protein, at 273,653 to 273,994 GFF279 GFF280 - hypothetical protein, at 273,991 to 274,344 GFF280 GFF281 - hypothetical protein, at 274,406 to 274,858 GFF281 GFF282 - hypothetical protein, at 274,915 to 275,271 GFF282 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 272.996 kb on - strand, within GFF277at 273.057 kb on + strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.065 kb on - strand, within GFF277at 273.113 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.137 kb on - strand, within GFF277at 273.184 kb on + strand, within GFF277at 273.212 kb on - strand, within GFF277at 273.255 kb on + strand, within GFF277at 273.263 kb on - strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.298 kb on + strand, within GFF277at 273.305 kb on + strand, within GFF277at 273.322 kb on + strandat 273.333 kb on + strandat 273.342 kb on - strandat 273.372 kb on + strandat 273.372 kb on + strandat 273.380 kb on - strandat 273.407 kb on + strand, within GFF278at 273.445 kb on - strand, within GFF278at 273.459 kb on - strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.460 kb on + strand, within GFF278at 273.466 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.468 kb on - strand, within GFF278at 273.488 kb on + strand, within GFF278at 273.496 kb on - strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.497 kb on + strand, within GFF278at 273.505 kb on - strand, within GFF278at 273.536 kb on - strand, within GFF278at 273.568 kb on + strand, within GFF278at 273.575 kb on - strand, within GFF278at 273.576 kb on - strand, within GFF278at 273.591 kb on - strand, within GFF278at 273.608 kb on + strand, within GFF278at 273.608 kb on - strand, within GFF278at 273.616 kb on - strand, within GFF278at 273.634 kb on - strandat 273.641 kb on + strandat 273.642 kb on - strandat 273.649 kb on - strandat 273.651 kb on - strandat 273.659 kb on + strandat 273.659 kb on + strandat 273.659 kb on - strandat 273.708 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.722 kb on + strand, within GFF279at 273.728 kb on - strand, within GFF279at 273.730 kb on - strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.739 kb on + strand, within GFF279at 273.744 kb on + strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.747 kb on - strand, within GFF279at 273.765 kb on - strand, within GFF279at 273.770 kb on + strand, within GFF279at 273.771 kb on - strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.813 kb on + strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.821 kb on - strand, within GFF279at 273.823 kb on - strand, within GFF279at 273.838 kb on - strand, within GFF279at 273.846 kb on - strand, within GFF279at 273.858 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.871 kb on - strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.927 kb on + strand, within GFF279at 273.935 kb on - strand, within GFF279at 273.937 kb on + strand, within GFF279at 273.943 kb on + strand, within GFF279at 273.966 kb on - strandat 273.983 kb on - strandat 273.985 kb on + strandat 273.990 kb on + strandat 273.995 kb on + strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.003 kb on - strandat 274.004 kb on + strandat 274.009 kb on + strandat 274.017 kb on + strandat 274.019 kb on + strandat 274.025 kb on - strandat 274.025 kb on - strandat 274.027 kb on - strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.029 kb on + strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.037 kb on - strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.061 kb on + strand, within GFF280at 274.069 kb on - strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.105 kb on + strand, within GFF280at 274.126 kb on - strand, within GFF280at 274.128 kb on + strand, within GFF280at 274.291 kb on + strand, within GFF280at 274.317 kb on - strandat 274.347 kb on - strandat 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.531 kb on + strand, within GFF281at 274.537 kb on - strand, within GFF281at 274.539 kb on - strand, within GFF281at 274.539 kb on - strand, within GFF281at 274.579 kb on + strand, within GFF281at 274.596 kb on - strand, within GFF281at 274.626 kb on + strand, within GFF281at 274.636 kb on + strand, within GFF281at 274.639 kb on - strand, within GFF281at 274.639 kb on - strand, within GFF281at 274.647 kb on + strand, within GFF281at 274.647 kb on + strand, within GFF281at 274.655 kb on - strand, within GFF281at 274.691 kb on - strand, within GFF281at 274.717 kb on + strand, within GFF281at 274.720 kb on - strand, within GFF281at 274.720 kb on - strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.746 kb on + strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.754 kb on - strand, within GFF281at 274.756 kb on - strand, within GFF281at 274.769 kb on + strand, within GFF281at 274.769 kb on - strand, within GFF281at 274.775 kb on - strand, within GFF281at 274.777 kb on - strand, within GFF281at 274.778 kb on + strand, within GFF281at 274.778 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.788 kb on + strand, within GFF281at 274.792 kb on - strand, within GFF281at 274.794 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.796 kb on - strand, within GFF281at 274.798 kb on + strand, within GFF281at 274.801 kb on - strand, within GFF281at 274.802 kb on - strand, within GFF281at 274.806 kb on - strand, within GFF281at 274.806 kb on - strand, within GFF281at 274.830 kb on - strandat 274.867 kb on - strandat 274.882 kb on - strandat 274.993 kb on + strand, within GFF282at 274.993 kb on + strand, within GFF282at 275.050 kb on + strand, within GFF282at 275.050 kb on + strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.058 kb on - strand, within GFF282at 275.104 kb on + strand, within GFF282at 275.104 kb on + strand, within GFF282at 275.112 kb on - strand, within GFF282at 275.170 kb on - strand, within GFF282at 275.244 kb on - strandat 275.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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272,996 - GFF277 0.12 -0.8
273,057 + GFF277 0.27 -1.7
273,065 - GFF277 0.29 -0.7
273,065 - GFF277 0.29 -0.2
273,113 - GFF277 0.41 -0.0
273,137 - GFF277 0.47 -1.3
273,137 - GFF277 0.47 -0.0
273,184 + GFF277 0.58 +1.9
273,212 - GFF277 0.65 +1.0
273,255 + GFF277 0.76 -0.5
273,263 - GFF277 0.78 +0.9
273,298 + GFF277 0.86 -1.5
273,298 + GFF277 0.86 -0.8
273,305 + GFF277 0.88 -0.3
273,322 + +0.5
273,333 + -2.5
273,342 - +1.4
273,372 + -1.5
273,372 + +0.6
273,380 - -0.1
273,407 + GFF278 0.18 -2.0
273,445 - GFF278 0.30 +1.5
273,459 - GFF278 0.34 -1.1
273,460 + GFF278 0.35 +1.8
273,460 + GFF278 0.35 -1.7
273,460 + GFF278 0.35 -0.7
273,466 - GFF278 0.37 +0.1
273,468 - GFF278 0.37 -0.0
273,468 - GFF278 0.37 +1.1
273,468 - GFF278 0.37 -0.6
273,488 + GFF278 0.44 -0.6
273,496 - GFF278 0.46 -2.0
273,497 + GFF278 0.46 -0.3
273,497 + GFF278 0.46 -1.2
273,497 + GFF278 0.46 -0.0
273,505 - GFF278 0.49 -1.7
273,536 - GFF278 0.59 -0.8
273,568 + GFF278 0.69 +0.2
273,575 - GFF278 0.71 -0.2
273,576 - GFF278 0.72 -2.3
273,591 - GFF278 0.77 +0.3
273,608 + GFF278 0.82 -1.1
273,608 - GFF278 0.82 +0.1
273,616 - GFF278 0.85 -0.5
273,634 - -0.6
273,641 + +0.4
273,642 - +0.3
273,649 - -1.8
273,651 - +1.1
273,659 + -0.7
273,659 + -1.2
273,659 - -0.0
273,708 + GFF279 0.16 +0.1
273,722 + GFF279 0.20 -0.3
273,722 + GFF279 0.20 -0.2
273,728 - GFF279 0.22 +1.9
273,730 - GFF279 0.23 -1.9
273,739 + GFF279 0.25 -0.3
273,739 + GFF279 0.25 -1.5
273,739 + GFF279 0.25 -0.0
273,739 + GFF279 0.25 -0.6
273,744 + GFF279 0.27 -0.4
273,747 - GFF279 0.27 +1.2
273,747 - GFF279 0.27 -0.9
273,747 - GFF279 0.27 -0.6
273,747 - GFF279 0.27 -0.6
273,747 - GFF279 0.27 -1.3
273,747 - GFF279 0.27 -0.6
273,765 - GFF279 0.33 +1.2
273,770 + GFF279 0.34 +1.2
273,771 - GFF279 0.35 -0.8
273,813 + GFF279 0.47 -0.3
273,813 + GFF279 0.47 +1.4
273,813 + GFF279 0.47 +0.1
273,813 + GFF279 0.47 +0.3
273,813 + GFF279 0.47 -0.3
273,813 + GFF279 0.47 -2.7
273,813 + GFF279 0.47 +0.6
273,813 + GFF279 0.47 +1.6
273,813 + GFF279 0.47 +0.0
273,813 + GFF279 0.47 -1.7
273,813 + GFF279 0.47 -0.4
273,813 + GFF279 0.47 -1.7
273,813 + GFF279 0.47 -0.4
273,813 + GFF279 0.47 -0.5
273,813 + GFF279 0.47 -1.6
273,821 - GFF279 0.49 -0.4
273,821 - GFF279 0.49 -0.2
273,821 - GFF279 0.49 +1.3
273,821 - GFF279 0.49 -0.6
273,821 - GFF279 0.49 +0.2
273,821 - GFF279 0.49 -1.4
273,821 - GFF279 0.49 -0.3
273,821 - GFF279 0.49 -0.2
273,823 - GFF279 0.50 +0.8
273,838 - GFF279 0.54 -0.5
273,846 - GFF279 0.56 +0.7
273,858 - GFF279 0.60 +0.2
273,871 - GFF279 0.64 -0.7
273,871 - GFF279 0.64 +0.4
273,871 - GFF279 0.64 -1.3
273,927 + GFF279 0.80 +0.6
273,927 + GFF279 0.80 +1.4
273,927 + GFF279 0.80 -0.7
273,935 - GFF279 0.82 +2.1
273,937 + GFF279 0.83 +0.1
273,943 + GFF279 0.85 -1.3
273,966 - +0.9
273,983 - +0.8
273,985 + -1.7
273,990 + +0.8
273,995 + +0.2
274,003 - +0.2
274,003 - +0.8
274,003 - +0.5
274,003 - +1.3
274,004 + -1.0
274,009 + -0.6
274,017 + -0.4
274,019 + -0.4
274,025 - +0.3
274,025 - +0.8
274,027 - GFF280 0.10 +0.6
274,029 + GFF280 0.11 +0.6
274,029 + GFF280 0.11 -1.3
274,037 - GFF280 0.13 +0.6
274,037 - GFF280 0.13 -0.6
274,037 - GFF280 0.13 +0.6
274,061 + GFF280 0.20 -0.0
274,061 + GFF280 0.20 -2.0
274,069 - GFF280 0.22 +0.6
274,105 + GFF280 0.32 -0.2
274,105 + GFF280 0.32 -0.2
274,126 - GFF280 0.38 -0.2
274,128 + GFF280 0.39 -0.5
274,291 + GFF280 0.85 -0.8
274,317 - -1.5
274,347 - -1.2
274,531 + GFF281 0.28 -1.6
274,531 + GFF281 0.28 -1.6
274,531 + GFF281 0.28 -1.6
274,531 + GFF281 0.28 +1.5
274,537 - GFF281 0.29 +0.4
274,539 - GFF281 0.29 -0.2
274,539 - GFF281 0.29 -1.3
274,579 + GFF281 0.38 -0.8
274,596 - GFF281 0.42 +0.3
274,626 + GFF281 0.49 -0.6
274,636 + GFF281 0.51 -0.1
274,639 - GFF281 0.51 -0.9
274,639 - GFF281 0.51 +0.9
274,647 + GFF281 0.53 +1.3
274,647 + GFF281 0.53 +0.8
274,655 - GFF281 0.55 +0.2
274,691 - GFF281 0.63 +1.4
274,717 + GFF281 0.69 +1.6
274,720 - GFF281 0.69 -1.6
274,720 - GFF281 0.69 -2.7
274,746 + GFF281 0.75 +1.0
274,746 + GFF281 0.75 +1.1
274,746 + GFF281 0.75 +0.3
274,746 + GFF281 0.75 -0.8
274,746 + GFF281 0.75 -0.0
274,754 - GFF281 0.77 -0.2
274,754 - GFF281 0.77 -1.7
274,754 - GFF281 0.77 +1.2
274,754 - GFF281 0.77 -1.7
274,754 - GFF281 0.77 +0.8
274,754 - GFF281 0.77 +1.1
274,756 - GFF281 0.77 +1.4
274,769 + GFF281 0.80 +0.5
274,769 - GFF281 0.80 -0.2
274,775 - GFF281 0.81 -2.0
274,777 - GFF281 0.82 +1.2
274,778 + GFF281 0.82 -0.6
274,778 + GFF281 0.82 -0.6
274,788 + GFF281 0.84 +0.2
274,788 + GFF281 0.84 +0.6
274,788 + GFF281 0.84 +0.4
274,788 + GFF281 0.84 +0.8
274,788 + GFF281 0.84 -0.3
274,788 + GFF281 0.84 -0.9
274,788 + GFF281 0.84 +0.3
274,788 + GFF281 0.84 -0.3
274,788 + GFF281 0.84 +1.2
274,788 + GFF281 0.84 -0.5
274,788 + GFF281 0.84 +1.2
274,788 + GFF281 0.84 +0.3
274,788 + GFF281 0.84 -1.3
274,788 + GFF281 0.84 -0.6
274,788 + GFF281 0.84 +0.9
274,788 + GFF281 0.84 -0.9
274,792 - GFF281 0.85 +0.0
274,794 - GFF281 0.86 +0.5
274,796 - GFF281 0.86 +0.2
274,796 - GFF281 0.86 -0.2
274,796 - GFF281 0.86 +0.8
274,796 - GFF281 0.86 +0.6
274,796 - GFF281 0.86 -0.9
274,796 - GFF281 0.86 +1.1
274,796 - GFF281 0.86 +0.9
274,796 - GFF281 0.86 -0.4
274,796 - GFF281 0.86 +0.3
274,796 - GFF281 0.86 +1.2
274,798 + GFF281 0.87 +0.1
274,801 - GFF281 0.87 -0.8
274,802 - GFF281 0.87 -0.4
274,806 - GFF281 0.88 -1.4
274,806 - GFF281 0.88 +1.5
274,830 - -1.2
274,867 - -0.6
274,882 - -0.6
274,993 + GFF282 0.22 +0.8
274,993 + GFF282 0.22 -0.2
275,050 + GFF282 0.38 -1.3
275,050 + GFF282 0.38 -1.0
275,058 - GFF282 0.40 +1.5
275,058 - GFF282 0.40 -0.2
275,058 - GFF282 0.40 -2.5
275,104 + GFF282 0.53 +0.2
275,104 + GFF282 0.53 +0.6
275,112 - GFF282 0.55 -1.4
275,170 - GFF282 0.71 -0.2
275,244 - +0.7
275,343 - -0.3

Or see this region's nucleotide sequence