Strain Fitness in Sphingobium sp. HT1-2 around GFF2615

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,635,763	+		GFF2614	0.34	+1.1
2,635,810	+		GFF2614	0.39	-0.7
2,635,811	-		GFF2614	0.39	+1.5
2,635,811	-		GFF2614	0.39	+0.4
2,635,816	-		GFF2614	0.39	-1.4
2,635,823	+		GFF2614	0.40	+0.0
2,635,823	+		GFF2614	0.40	+0.9
2,635,828	+		GFF2614	0.40	-1.2
2,635,831	-		GFF2614	0.41	+0.0
2,635,831	-		GFF2614	0.41	+0.9
2,635,831	-		GFF2614	0.41	-1.4
2,635,839	-		GFF2614	0.41	-0.1
2,635,841	+		GFF2614	0.42	-1.6
2,635,849	+		GFF2614	0.42	-2.2
2,635,849	-		GFF2614	0.42	-0.0
2,635,851	+		GFF2614	0.43	+0.0
2,635,860	-		GFF2614	0.43	-0.5
2,635,867	+		GFF2614	0.44	-0.0
2,635,868	+		GFF2614	0.44	+0.7
2,635,870	-		GFF2614	0.44	-0.1
2,635,875	-		GFF2614	0.45	+0.2
2,635,875	-		GFF2614	0.45	-0.7
2,635,875	-		GFF2614	0.45	-0.7
2,635,875	-		GFF2614	0.45	+0.9
2,635,876	+		GFF2614	0.45	-1.8
2,635,910	+		GFF2614	0.48	-0.5
2,635,924	+		GFF2614	0.50	+0.6
2,635,924	+		GFF2614	0.50	-0.4
2,635,924	+		GFF2614	0.50	+0.9
2,635,924	+		GFF2614	0.50	-0.8
2,635,932	-		GFF2614	0.50	-0.9
2,635,932	-		GFF2614	0.50	-0.4
2,635,932	-		GFF2614	0.50	+0.1
2,635,973	-		GFF2614	0.54	-2.1
2,635,973	-		GFF2614	0.54	-1.4
2,635,997	-		GFF2614	0.57	+1.1
2,636,035	+		GFF2614	0.60	-1.5
2,636,038	-		GFF2614	0.61	-0.6
2,636,038	-		GFF2614	0.61	-0.6
2,636,056	+		GFF2614	0.62	-0.6
2,636,060	+		GFF2614	0.63	-0.5
2,636,090	-		GFF2614	0.66	+0.0
2,636,111	-		GFF2614	0.68	-0.4
2,636,135	-		GFF2614	0.70	-0.2
2,636,140	-		GFF2614	0.70	-1.4
2,636,141	-		GFF2614	0.70	+0.3
2,636,175	-		GFF2614	0.74	-0.4
2,636,179	+		GFF2614	0.74	-2.2
2,636,199	-		GFF2614	0.76	+0.1
2,636,199	-		GFF2614	0.76	-0.4
2,636,212	+		GFF2614	0.77	-0.6
2,636,218	+		GFF2614	0.78	-1.2
2,636,226	-		GFF2614	0.79	+1.2
2,636,233	+		GFF2614	0.79	-0.5
2,636,237	-		GFF2614	0.80	-1.4
2,636,244	+		GFF2614	0.80	-0.6
2,636,244	+		GFF2614	0.80	-1.6
2,636,244	+		GFF2614	0.80	+0.1
2,636,244	+		GFF2614	0.80	-0.7
2,636,252	-		GFF2614	0.81	-1.9
2,636,264	+		GFF2614	0.82	-0.1
2,636,269	+		GFF2614	0.83	+0.0
2,636,277	-		GFF2614	0.83	+0.2
2,636,277	-		GFF2614	0.83	-1.4
2,636,277	-		GFF2614	0.83	-1.0
2,636,280	+		GFF2614	0.84	+1.0
2,636,296	-		GFF2614	0.85	+0.3
2,636,313	+		GFF2614	0.87	-0.1
2,636,313	+		GFF2614	0.87	-0.8
2,636,321	+		GFF2614	0.88	+0.1
2,636,321	+		GFF2614	0.88	-0.5
2,636,321	+		GFF2614	0.88	-0.5
2,636,321	+		GFF2614	0.88	-1.1
2,636,334	-		GFF2614	0.89	-0.5
2,636,339	-		GFF2614	0.89	+0.0
2,636,339	-		GFF2614	0.89	+0.6
2,636,343	+		GFF2614	0.90	-0.7
2,636,344	+		GFF2614	0.90	-1.4
2,636,352	+				-1.4
2,636,371	+				-1.6
2,636,374	+				-0.9
2,636,374	+				-0.4
2,636,379	-				-2.1
2,636,381	+				+0.0
2,636,381	+				+0.9
2,636,381	+				-1.6
2,636,381	+				-2.1
2,636,387	-				+0.5
2,636,389	-				+0.2
2,636,389	-				+0.0
2,636,389	-				-1.9
2,636,389	-				-0.8
2,636,389	-				-1.9
2,636,389	-				+0.2
2,636,389	-				+0.4
2,636,401	-				+0.2
2,636,412	+				-0.3
2,636,437	-				+0.2
2,636,437	-				+0.5
2,636,456	+				-0.2
2,636,459	-				-1.1
2,636,464	-				-0.9
2,636,479	+				-0.5
2,636,479	+				+0.4
2,636,487	-				-1.2
2,636,487	-				-1.6
2,636,512	-				-1.4
2,636,517	+				+0.4
2,636,525	-				-1.9
2,636,530	-				-2.1
2,636,544	+				-0.7
2,636,551	+				-0.2
2,636,577	+				+0.2
2,636,582	+				-1.2
2,636,582	+				-0.6
2,636,585	-				-1.7
2,636,588	+				+0.0
2,636,590	+				+0.3
2,636,590	+				-2.7
2,636,590	+				-1.7
2,636,590	+				+0.4
2,636,590	+				-0.7
2,636,590	-				-1.8
2,636,598	-				-0.4
2,636,598	-				-1.6
2,636,638	+				+0.6
2,636,646	+				-0.1
2,636,649	+				-0.1
2,636,652	-				-0.5
2,636,669	-				+0.9
2,636,672	+				+0.2
2,636,678	+				+0.5
2,636,680	-				+0.3
2,636,685	-				-0.7
2,636,716	+				+0.6
2,636,716	+				-0.2
2,636,726	+				+1.2
2,636,726	+				+1.0
2,636,726	+				+0.1
2,636,726	+				+0.2
2,636,726	+				+0.2
2,636,734	-				-0.4
2,636,770	+				+0.1
2,636,775	+				+0.5
2,636,777	-				-0.7
2,636,782	+				+0.9
2,636,792	-				-0.8
2,636,794	-				-1.7
2,636,795	+				-0.6
2,636,799	-				-0.9
2,636,800	+				-0.1
2,636,800	+				+0.1
2,636,800	+				-1.0
2,636,800	+				+0.3
2,636,800	+				+0.8
2,636,800	+				+0.1
2,636,803	-				-0.6
2,636,808	-				-1.3
2,636,808	-				-0.2
2,636,808	-				-1.4
2,636,815	+				-1.2
2,636,820	+				-1.4
2,636,820	+				-0.6
2,636,828	-				-0.4
2,636,828	-				+0.8
2,636,828	-				+0.1
2,636,830	+				-2.1
2,636,830	+				+0.8
2,636,830	+				+1.0
2,636,830	+				+1.4
2,636,830	+				-0.8
2,636,838	-				+0.2
2,636,844	-				+0.0
2,636,849	+		GFF2615	0.10	+0.4
2,636,849	-		GFF2615	0.10	+0.9
2,636,849	-		GFF2615	0.10	+0.1
2,636,873	+		GFF2615	0.13	-0.6
2,636,941	+		GFF2615	0.21	-2.2
2,636,949	-		GFF2615	0.22	-0.4
2,636,951	+		GFF2615	0.22	+0.4
2,636,952	+		GFF2615	0.22	-1.4
2,636,955	-		GFF2615	0.23	+0.5
2,636,955	-		GFF2615	0.23	-1.2
2,636,955	-		GFF2615	0.23	+0.2
2,636,957	+		GFF2615	0.23	-0.1
2,636,957	+		GFF2615	0.23	-0.1
2,636,957	+		GFF2615	0.23	-1.0
2,636,957	+		GFF2615	0.23	-0.2
2,636,957	+		GFF2615	0.23	-0.0
2,636,957	+		GFF2615	0.23	-0.6
2,636,957	+		GFF2615	0.23	-1.0
2,636,957	+		GFF2615	0.23	+0.0
2,636,957	+		GFF2615	0.23	-0.3
2,636,957	+		GFF2615	0.23	+0.0
2,636,957	+		GFF2615	0.23	+0.4
2,636,957	+		GFF2615	0.23	+0.6
2,636,957	+		GFF2615	0.23	+0.6
2,636,957	+		GFF2615	0.23	-0.2
2,636,957	+		GFF2615	0.23	-0.6
2,636,965	-		GFF2615	0.24	+0.4
2,636,965	-		GFF2615	0.24	-0.1
2,636,965	-		GFF2615	0.24	-1.1
2,636,965	-		GFF2615	0.24	+0.1
2,636,965	-		GFF2615	0.24	-0.1
2,636,965	-		GFF2615	0.24	+0.6
2,636,965	-		GFF2615	0.24	-1.4
2,636,965	-		GFF2615	0.24	+0.4
2,636,965	-		GFF2615	0.24	+0.4
2,636,965	-		GFF2615	0.24	-1.2
2,636,965	-		GFF2615	0.24	+0.4
2,636,965	-		GFF2615	0.24	-0.6
2,636,965	-		GFF2615	0.24	+0.6
2,636,965	-		GFF2615	0.24	+0.1
2,636,965	-		GFF2615	0.24	+0.8
2,636,965	-		GFF2615	0.24	+0.1
2,636,974	+		GFF2615	0.25	+0.0
2,636,974	+		GFF2615	0.25	-0.7
2,636,974	+		GFF2615	0.25	+0.1
2,636,980	-		GFF2615	0.26	-2.0
2,636,982	-		GFF2615	0.26	+0.6
2,636,982	-		GFF2615	0.26	-0.4
2,636,987	-		GFF2615	0.26	-0.7
2,637,008	+		GFF2615	0.29	+0.0
2,637,016	+		GFF2615	0.30	-1.4
2,637,025	-		GFF2615	0.31	-1.4
2,637,032	+		GFF2615	0.32	-1.0
2,637,032	+		GFF2615	0.32	-0.3
2,637,054	+		GFF2615	0.34	+0.2
2,637,056	-		GFF2615	0.34	+0.1
2,637,056	-		GFF2615	0.34	-2.1
2,637,058	+		GFF2615	0.35	-0.6
2,637,058	+		GFF2615	0.35	+1.6
2,637,076	-		GFF2615	0.37	+0.6
2,637,077	+		GFF2615	0.37	-0.5
2,637,139	+		GFF2615	0.44	-1.5
2,637,139	+		GFF2615	0.44	+0.3
2,637,161	+		GFF2615	0.47	-1.1
2,637,161	+		GFF2615	0.47	+0.5
2,637,169	-		GFF2615	0.48	-0.7
2,637,179	-		GFF2615	0.49	-0.7
2,637,179	-		GFF2615	0.49	+0.1
2,637,284	-		GFF2615	0.61	-0.8
2,637,284	-		GFF2615	0.61	-1.1
2,637,284	-		GFF2615	0.61	-0.3
2,637,299	+		GFF2615	0.63	+0.0
2,637,306	+		GFF2615	0.63	-0.4
2,637,355	+		GFF2615	0.69	+1.3
2,637,359	+		GFF2615	0.70	-1.0
2,637,359	+		GFF2615	0.70	-0.3
2,637,363	-		GFF2615	0.70	-0.1
2,637,391	+		GFF2615	0.73	+0.9
2,637,396	-		GFF2615	0.74	+0.9
2,637,399	-		GFF2615	0.74	+0.2
2,637,399	-		GFF2615	0.74	-0.8
2,637,419	+		GFF2615	0.77	-0.6
2,637,420	+		GFF2615	0.77	+0.7
2,637,420	+		GFF2615	0.77	-1.0
2,637,428	-		GFF2615	0.78	-0.8
2,637,428	-		GFF2615	0.78	-1.2
2,637,433	-		GFF2615	0.78	-0.5
2,637,439	-		GFF2615	0.79	+1.4
2,637,449	+		GFF2615	0.80	+0.0
2,637,522	+		GFF2615	0.89	+0.7
2,637,528	+		GFF2615	0.89	+0.0
2,637,557	+				-1.2
2,637,557	+				-0.9
2,637,564	+				-0.6
2,637,565	-				-0.5
2,637,572	-				+0.1
2,637,583	+				-0.2
2,637,583	+				-0.1
2,637,601	-				+0.3
2,637,601	-				-0.9
2,637,601	-				+0.6
2,637,601	-				-0.8
2,637,601	-				-2.0
2,637,605	+				-0.4
2,637,605	+				+1.0
2,637,605	+				-2.1
2,637,610	+				-0.1
2,637,610	+				-0.1
2,637,610	+				-0.8
2,637,610	+				-1.1
2,637,613	-				-0.7
2,637,618	-				-1.8
2,637,618	-				-0.5
2,637,618	-				-0.6
2,637,644	-				+0.5
2,637,648	+				+0.7
2,637,656	-				-2.7
2,637,665	+				-1.8
2,637,666	+				-2.5
2,637,666	+				+0.1
2,637,666	+				-0.6
2,637,666	+				-0.7
2,637,674	-				+0.6
2,637,676	+				+0.2
2,637,677	+				+1.5
2,637,677	+				-0.7
2,637,684	-				+0.1
2,637,685	-				-0.8
2,637,685	-				-1.0
2,637,685	-				+0.6
2,637,707	-				-0.7
2,637,711	+				-0.9
2,637,734	+				-0.7
2,637,735	-				-2.4
2,637,742	-				+0.4
2,637,742	-				-0.2
2,637,742	-				+0.4
2,637,743	-				+0.3
2,637,775	+				-0.1
2,637,775	+				-0.9
2,637,775	+				-0.1
2,637,775	+				-0.9
2,637,775	+				+1.1
2,637,780	+				-0.7
2,637,780	+				+0.5
2,637,780	+				+1.0
2,637,780	+				-2.7
2,637,780	+				-1.0
2,637,780	+				-1.1
2,637,780	+				-2.1
2,637,780	+				+0.5
2,637,780	+				+0.3
2,637,780	+				+0.2
2,637,780	+				+0.6
2,637,780	+				-0.4
2,637,780	+				+0.1
2,637,780	+				-1.6
2,637,780	+				-0.4
2,637,780	+				+0.2
2,637,780	+				+0.8
2,637,780	+				-1.3
2,637,780	+				-0.2
2,637,780	+				-0.8
2,637,783	-				+0.2
2,637,785	+				+0.7
2,637,788	-				-1.6
2,637,788	-				-1.3
2,637,788	-				+0.8
2,637,788	-				-0.9
2,637,788	-				+0.2
2,637,788	-				+0.1
2,637,788	-				+0.9
2,637,788	-				-0.7
2,637,788	-				+0.4
2,637,788	-				+1.4
2,637,788	-				+1.0
2,637,788	-				-1.7
2,637,788	-				-0.2
2,637,788	-				-2.0
2,637,788	-				-1.7
2,637,788	-				+0.2
2,637,788	-				+0.4
2,637,788	-				-0.9
2,637,788	-				-1.4
2,637,790	+				+0.8
2,637,793	-				+0.2
2,637,793	-				+0.3
2,637,798	-				-0.6
2,637,808	+				-0.8
2,637,808	+				-2.2
2,637,816	-				+0.7
2,637,820	+				-0.8
2,637,821	+				+0.1
2,637,821	+				-0.2
2,637,821	+				-1.0
2,637,826	-				+0.8
2,637,829	-				-0.8
2,637,836	-				+0.8
2,637,840	+				+0.8
2,637,886	-				+1.0
2,637,895	-				+0.0
2,637,913	+				-1.4
2,637,921	-				-0.5
2,637,934	+				+0.1
2,637,993	-				-0.1
2,637,993	-				+0.1
2,637,993	-				-0.6
2,638,008	+				-1.0
2,638,015	-				-0.2
2,638,015	-				-1.1
2,638,039	-				+0.6
2,638,049	+				+0.1
2,638,062	-				+0.3
2,638,081	+				-0.9
2,638,089	-				+0.2
2,638,089	-				+0.3
2,638,089	-				-0.0
2,638,112	+		GFF2616	0.14	-0.3
2,638,120	-		GFF2616	0.16	-0.2
2,638,131	+		GFF2616	0.18	+0.7
2,638,135	-		GFF2616	0.18	-0.1
2,638,139	-		GFF2616	0.19	+0.5
2,638,163	+		GFF2616	0.24	-0.6
2,638,173	+		GFF2616	0.26	+0.4
2,638,209	-		GFF2616	0.33	-0.1
2,638,245	-		GFF2616	0.39	-0.3
2,638,277	+		GFF2616	0.46	+0.6
2,638,286	+		GFF2616	0.47	-0.2
2,638,286	+		GFF2616	0.47	-1.0
2,638,286	+		GFF2616	0.47	-3.0
2,638,286	+		GFF2616	0.47	+0.1
2,638,286	+		GFF2616	0.47	+0.3
2,638,286	+		GFF2616	0.47	-0.5
2,638,286	+		GFF2616	0.47	+0.8
2,638,294	-		GFF2616	0.49	-0.4
2,638,294	-		GFF2616	0.49	-1.1
2,638,294	-		GFF2616	0.49	-0.7
2,638,294	-		GFF2616	0.49	-0.7
2,638,294	-		GFF2616	0.49	+0.1
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