Strain Fitness in Sphingobium sp. HT1-2 around GFF2564

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,579,158	+		GFF2561	0.88	+1.0
2,579,161	-		GFF2561	0.88	-0.3
2,579,161	-		GFF2561	0.88	-2.0
2,579,178	-		GFF2561	0.89	+0.5
2,579,179	-		GFF2561	0.89	-0.1
2,579,196	-		GFF2561	0.90	+0.7
2,579,207	-				+0.6
2,579,217	+				-1.8
2,579,217	+				+1.3
2,579,225	-				-1.9
2,579,225	-				-2.2
2,579,225	-				+0.0
2,579,225	-				+0.9
2,579,228	+				+0.6
2,579,241	-				+0.3
2,579,241	-				-0.5
2,579,241	-				-0.5
2,579,247	-				+0.1
2,579,259	-				-1.4
2,579,267	+				+1.1
2,579,267	+				+1.4
2,579,267	+				+0.6
2,579,275	-				-1.4
2,579,306	+				-1.2
2,579,316	+				-0.0
2,579,323	-				-1.2
2,579,330	-				-0.2
2,579,333	+				+0.5
2,579,335	-				+1.3
2,579,341	-				-0.9
2,579,341	-				+0.1
2,579,341	-				-1.9
2,579,383	-				-0.7
2,579,407	-				-3.1
2,579,446	-				-2.6
2,579,457	+				+1.4
2,579,469	-				-1.0
2,579,547	+				+1.1
2,579,571	-				+0.8
2,579,573	+				-0.6
2,579,580	+				-1.8
2,579,580	+				-2.7
2,579,580	+				-1.4
2,579,580	+				-1.0
2,579,580	+				-0.9
2,579,580	+				-1.0
2,579,580	+				-0.5
2,579,580	+				-0.5
2,579,580	+				+1.0
2,579,580	+				-0.7
2,579,580	+				-0.2
2,579,580	+				+0.6
2,579,580	+				-0.2
2,579,580	+				+0.9
2,579,580	+				-1.7
2,579,580	+				-0.1
2,579,580	+				+1.1
2,579,581	-				-1.1
2,579,581	-				-0.1
2,579,581	-				-0.1
2,579,581	-				+1.0
2,579,588	-		GFF2562	0.14	-1.1
2,579,588	-		GFF2562	0.14	-0.8
2,579,588	-		GFF2562	0.14	-1.7
2,579,588	-		GFF2562	0.14	-2.2
2,579,588	-		GFF2562	0.14	-0.1
2,579,588	-		GFF2562	0.14	+1.0
2,579,588	-		GFF2562	0.14	-0.4
2,579,609	-		GFF2562	0.24	-1.8
2,579,609	-		GFF2562	0.24	+0.7
2,579,609	-		GFF2562	0.24	+0.1
2,579,609	-		GFF2562	0.24	+0.3
2,579,609	-		GFF2562	0.24	-1.4
2,579,637	+		GFF2562	0.39	-0.8
2,579,642	+		GFF2562	0.42	-2.2
2,579,643	+		GFF2562	0.42	+0.1
2,579,643	+		GFF2562	0.42	-1.0
2,579,643	+		GFF2562	0.42	-0.6
2,579,649	+		GFF2562	0.45	-0.8
2,579,650	-		GFF2562	0.46	+0.6
2,579,650	-		GFF2562	0.46	+0.2
2,579,650	-		GFF2562	0.46	+0.8
2,579,650	-		GFF2562	0.46	+0.4
2,579,651	-		GFF2562	0.46	+0.4
2,579,651	-		GFF2562	0.46	-0.9
2,579,651	-		GFF2562	0.46	-0.6
2,579,651	-		GFF2562	0.46	-1.4
2,579,653	+		GFF2562	0.47	+1.2
2,579,685	-		GFF2562	0.64	-0.2
2,579,694	-		GFF2562	0.69	+0.4
2,579,696	+		GFF2562	0.70	+0.8
2,579,696	+		GFF2562	0.70	-1.1
2,579,696	+		GFF2562	0.70	+0.6
2,579,704	-		GFF2562	0.74	+0.7
2,579,704	-		GFF2562	0.74	+0.8
2,579,704	-		GFF2562	0.74	-1.7
2,579,708	+		GFF2562	0.76	+1.4
2,579,737	+				+0.7
2,579,742	+				-0.9
2,579,745	-				-0.8
2,579,745	-				+0.0
2,579,745	-				+0.5
2,579,747	+				-1.2
2,579,747	+				-0.8
2,579,747	+				-0.6
2,579,750	-				-1.4
2,579,750	-				+0.0
2,579,755	-				+0.5
2,579,755	-				+0.5
2,579,822	+				-0.7
2,579,842	+				+0.5
2,579,851	-				-0.6
2,579,870	+		GFF2563	0.10	-0.3
2,579,898	-		GFF2563	0.19	+0.1
2,579,898	-		GFF2563	0.19	-0.2
2,579,898	-		GFF2563	0.19	-2.7
2,579,900	+		GFF2563	0.20	-1.0
2,579,905	+		GFF2563	0.21	-0.6
2,579,908	-		GFF2563	0.22	-1.6
2,579,908	-		GFF2563	0.22	+0.3
2,579,921	+		GFF2563	0.27	-0.2
2,579,931	+		GFF2563	0.30	-0.6
2,579,936	+		GFF2563	0.31	-1.7
2,579,936	+		GFF2563	0.31	+1.4
2,579,936	+		GFF2563	0.31	+0.3
2,579,939	-		GFF2563	0.32	-0.9
2,579,939	-		GFF2563	0.32	-0.3
2,579,944	-		GFF2563	0.34	-1.2
2,579,944	-		GFF2563	0.34	-2.7
2,579,954	-		GFF2563	0.37	-1.3
2,579,959	-		GFF2563	0.39	-0.8
2,579,978	+		GFF2563	0.45	-2.0
2,580,003	+		GFF2563	0.53	-0.6
2,580,003	+		GFF2563	0.53	-0.9
2,580,003	+		GFF2563	0.53	+0.6
2,580,006	-		GFF2563	0.54	-0.2
2,580,011	-		GFF2563	0.55	-1.4
2,580,011	-		GFF2563	0.55	-0.1
2,580,011	-		GFF2563	0.55	-0.1
2,580,011	-		GFF2563	0.55	-0.3
2,580,011	-		GFF2563	0.55	+0.2
2,580,011	-		GFF2563	0.55	-0.3
2,580,011	-		GFF2563	0.55	-1.7
2,580,011	-		GFF2563	0.55	+0.0
2,580,016	-		GFF2563	0.57	-0.3
2,580,033	-		GFF2563	0.62	-2.0
2,580,051	+		GFF2563	0.68	-0.4
2,580,051	+		GFF2563	0.68	-2.2
2,580,056	+		GFF2563	0.70	-0.2
2,580,056	+		GFF2563	0.70	+0.9
2,580,056	+		GFF2563	0.70	+0.2
2,580,056	+		GFF2563	0.70	-0.6
2,580,056	+		GFF2563	0.70	+1.2
2,580,056	+		GFF2563	0.70	-1.0
2,580,056	+		GFF2563	0.70	+0.1
2,580,059	-		GFF2563	0.71	-1.8
2,580,059	-		GFF2563	0.71	-0.4
2,580,064	-		GFF2563	0.72	-1.2
2,580,064	-		GFF2563	0.72	-0.2
2,580,064	-		GFF2563	0.72	-0.2
2,580,064	-		GFF2563	0.72	-0.8
2,580,064	-		GFF2563	0.72	+0.5
2,580,072	+		GFF2563	0.75	-0.2
2,580,072	+		GFF2563	0.75	+0.3
2,580,077	+		GFF2563	0.77	-0.2
2,580,080	-		GFF2563	0.78	+0.1
2,580,080	-		GFF2563	0.78	+0.7
2,580,089	-		GFF2563	0.80	+1.0
2,580,095	-		GFF2563	0.82	-0.0
2,580,097	+		GFF2563	0.83	+0.2
2,580,097	+		GFF2563	0.83	-1.0
2,580,111	+		GFF2563	0.88	-0.9
2,580,121	+				-0.1
2,580,131	+				-0.4
2,580,134	-				-0.6
2,580,138	+				-0.4
2,580,143	+				+0.2
2,580,161	-				-1.2
2,580,161	-				-1.1
2,580,161	-				-1.4
2,580,166	+				-2.0
2,580,166	+				+0.1
2,580,166	+				-1.8
2,580,166	+				+1.1
2,580,174	-				-0.5
2,580,174	-				-0.2
2,580,175	+				+0.6
2,580,175	+				+0.3
2,580,175	+				-1.3
2,580,175	+				-1.6
2,580,183	-				-1.0
2,580,188	-				+0.4
2,580,193	-				-0.3
2,580,201	+				-0.8
2,580,201	+				+0.2
2,580,201	+				+0.3
2,580,201	+				+1.1
2,580,201	+				-0.0
2,580,201	+				+0.3
2,580,201	+				+0.5
2,580,201	+				-0.7
2,580,201	+				-1.4
2,580,201	+				-0.7
2,580,201	+				+0.4
2,580,201	+				+0.3
2,580,201	+				+1.2
2,580,201	+				-0.6
2,580,204	-				-1.7
2,580,209	-				+0.7
2,580,209	-				+1.2
2,580,209	-				-0.2
2,580,209	-				-0.2
2,580,209	-				-1.4
2,580,209	-				-1.9
2,580,209	-				-0.8
2,580,209	-				-0.0
2,580,209	-				+0.3
2,580,209	-				-0.6
2,580,209	-				+0.3
2,580,209	-				-1.2
2,580,209	-				-0.1
2,580,209	-				+0.2
2,580,231	-				-0.2
2,580,233	+				-0.8
2,580,240	+				-1.0
2,580,243	+				+0.5
2,580,248	+		GFF2564	0.10	-0.6
2,580,248	+		GFF2564	0.10	+0.8
2,580,248	+		GFF2564	0.10	-0.6
2,580,248	+		GFF2564	0.10	-0.4
2,580,256	-		GFF2564	0.11	-0.3
2,580,256	-		GFF2564	0.11	+0.6
2,580,256	-		GFF2564	0.11	+1.1
2,580,256	-		GFF2564	0.11	+0.7
2,580,256	-		GFF2564	0.11	-0.2
2,580,266	-		GFF2564	0.12	+1.9
2,580,285	+		GFF2564	0.14	-0.4
2,580,301	-		GFF2564	0.16	-0.1
2,580,322	+		GFF2564	0.19	+1.6
2,580,328	+		GFF2564	0.19	-0.9
2,580,328	+		GFF2564	0.19	+0.5
2,580,329	-		GFF2564	0.19	-0.5
2,580,332	+		GFF2564	0.20	-0.6
2,580,332	+		GFF2564	0.20	-0.6
2,580,332	+		GFF2564	0.20	-1.0
2,580,332	+		GFF2564	0.20	+0.4
2,580,340	-		GFF2564	0.21	+0.4
2,580,347	+		GFF2564	0.21	-1.1
2,580,351	+		GFF2564	0.22	-0.9
2,580,351	+		GFF2564	0.22	+0.2
2,580,359	-		GFF2564	0.23	+0.6
2,580,359	-		GFF2564	0.23	+0.4
2,580,359	-		GFF2564	0.23	-0.8
2,580,359	-		GFF2564	0.23	+0.5
2,580,359	-		GFF2564	0.23	+0.2
2,580,376	-		GFF2564	0.25	-1.6
2,580,378	-		GFF2564	0.25	-0.4
2,580,382	+		GFF2564	0.25	-0.4
2,580,382	+		GFF2564	0.25	-1.8
2,580,406	+		GFF2564	0.28	-1.3
2,580,406	+		GFF2564	0.28	-0.3
2,580,414	-		GFF2564	0.29	-1.1
2,580,421	+		GFF2564	0.30	-0.1
2,580,421	+		GFF2564	0.30	+0.8
2,580,421	+		GFF2564	0.30	-0.3
2,580,421	+		GFF2564	0.30	-0.2
2,580,421	+		GFF2564	0.30	+0.8
2,580,421	+		GFF2564	0.30	+1.7
2,580,421	+		GFF2564	0.30	-0.9
2,580,421	+		GFF2564	0.30	+0.4
2,580,421	+		GFF2564	0.30	-0.4
2,580,421	+		GFF2564	0.30	-0.2
2,580,421	+		GFF2564	0.30	-0.4
2,580,421	+		GFF2564	0.30	+0.8
2,580,429	-		GFF2564	0.31	-1.7
2,580,429	-		GFF2564	0.31	-0.2
2,580,429	-		GFF2564	0.31	-0.2
2,580,429	-		GFF2564	0.31	+0.5
2,580,429	-		GFF2564	0.31	+0.3
2,580,429	-		GFF2564	0.31	+0.8
2,580,429	-		GFF2564	0.31	+0.6
2,580,429	-		GFF2564	0.31	-1.2
2,580,429	-		GFF2564	0.31	+0.6
2,580,429	-		GFF2564	0.31	-1.0
2,580,429	-		GFF2564	0.31	+0.6
2,580,431	+		GFF2564	0.31	-0.9
2,580,434	-		GFF2564	0.31	+0.8
2,580,434	-		GFF2564	0.31	-0.6
2,580,434	-		GFF2564	0.31	-1.8
2,580,435	-		GFF2564	0.31	+0.1
2,580,452	+		GFF2564	0.33	-0.3
2,580,463	+		GFF2564	0.34	-0.1
2,580,463	+		GFF2564	0.34	-1.8
2,580,465	-		GFF2564	0.35	-0.7
2,580,471	-		GFF2564	0.35	+1.1
2,580,488	-		GFF2564	0.37	-0.2
2,580,500	+		GFF2564	0.39	+0.0
2,580,502	-		GFF2564	0.39	-2.6
2,580,506	+		GFF2564	0.39	-0.1
2,580,520	+		GFF2564	0.41	+0.9
2,580,520	+		GFF2564	0.41	+0.6
2,580,520	+		GFF2564	0.41	+1.0
2,580,520	+		GFF2564	0.41	+0.1
2,580,520	+		GFF2564	0.41	-0.5
2,580,520	+		GFF2564	0.41	-0.9
2,580,520	+		GFF2564	0.41	-1.2
2,580,520	+		GFF2564	0.41	+0.5
2,580,525	+		GFF2564	0.41	-0.6
2,580,528	-		GFF2564	0.42	+1.1
2,580,528	-		GFF2564	0.42	-0.4
2,580,528	-		GFF2564	0.42	-0.5
2,580,533	-		GFF2564	0.42	-0.2
2,580,588	+		GFF2564	0.48	-0.5
2,580,588	+		GFF2564	0.48	-1.9
2,580,589	+		GFF2564	0.49	+0.6
2,580,589	+		GFF2564	0.49	-1.5
2,580,597	-		GFF2564	0.49	-2.9
2,580,597	-		GFF2564	0.49	-0.1
2,580,628	+		GFF2564	0.53	-1.2
2,580,633	+		GFF2564	0.54	+0.8
2,580,636	-		GFF2564	0.54	-0.8
2,580,643	+		GFF2564	0.55	-0.6
2,580,651	-		GFF2564	0.56	+0.8
2,580,658	+		GFF2564	0.56	-0.9
2,580,658	+		GFF2564	0.56	-1.1
2,580,658	+		GFF2564	0.56	+0.0
2,580,666	-		GFF2564	0.57	+0.0
2,580,668	+		GFF2564	0.57	-0.3
2,580,668	+		GFF2564	0.57	-2.9
2,580,673	+		GFF2564	0.58	-1.4
2,580,678	+		GFF2564	0.59	-0.7
2,580,681	-		GFF2564	0.59	-0.3
2,580,686	-		GFF2564	0.59	-0.3
2,580,687	+		GFF2564	0.60	+0.7
2,580,700	-		GFF2564	0.61	-0.1
2,580,720	+		GFF2564	0.63	-2.0
2,580,727	+		GFF2564	0.64	-0.4
2,580,727	+		GFF2564	0.64	-1.0
2,580,727	+		GFF2564	0.64	-2.3
2,580,735	-		GFF2564	0.65	-2.6
2,580,735	-		GFF2564	0.65	-0.3
2,580,735	-		GFF2564	0.65	-0.1
2,580,735	-		GFF2564	0.65	-0.8
2,580,735	-		GFF2564	0.65	+0.2
2,580,735	-		GFF2564	0.65	-0.1
2,580,735	-		GFF2564	0.65	+0.0
2,580,742	+		GFF2564	0.66	-2.0
2,580,771	-		GFF2564	0.69	+0.4
2,580,794	+		GFF2564	0.72	-1.1
2,580,802	-		GFF2564	0.73	-1.0
2,580,808	-		GFF2564	0.73	-1.0
2,580,816	+		GFF2564	0.74	-0.1
2,580,831	+		GFF2564	0.76	+0.3
2,580,831	+		GFF2564	0.76	-1.1
2,580,839	-		GFF2564	0.77	+0.5
2,580,839	-		GFF2564	0.77	-2.5
2,580,839	-		GFF2564	0.77	+0.3
2,580,839	-		GFF2564	0.77	-0.3
2,580,847	+		GFF2564	0.78	-1.5
2,580,876	+		GFF2564	0.81	-2.2
2,580,894	+		GFF2564	0.83	-1.3
2,580,902	-		GFF2564	0.84	+0.5
2,580,919	-		GFF2564	0.86	-0.4
2,580,956	-		GFF2564	0.90	-0.6
2,580,961	-				+0.6
2,581,002	-				-0.7
2,581,007	-				-0.4
2,581,007	-				+0.5
2,581,033	+				-0.9
2,581,045	+				+0.5
2,581,046	+				-0.9
2,581,053	-				+0.7
2,581,053	-				+0.3
2,581,053	-				+1.0
2,581,077	+				-1.9
2,581,080	+				+1.2
2,581,085	-				-0.2
2,581,088	-				-0.1
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