Strain Fitness in Sphingobium sp. HT1-2 around GFF2504

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,527,138	+		GFF2503	0.20	-1.3
2,527,138	+		GFF2503	0.20	-1.4
2,527,138	+		GFF2503	0.20	+1.0
2,527,138	+		GFF2503	0.20	-0.5
2,527,138	+		GFF2503	0.20	-0.1
2,527,138	+		GFF2503	0.20	-0.1
2,527,138	+		GFF2503	0.20	-0.5
2,527,138	+		GFF2503	0.20	-0.4
2,527,138	+		GFF2503	0.20	+0.8
2,527,138	+		GFF2503	0.20	+1.6
2,527,143	+		GFF2503	0.21	-2.0
2,527,143	+		GFF2503	0.21	-0.8
2,527,146	-		GFF2503	0.21	+0.3
2,527,146	-		GFF2503	0.21	-0.1
2,527,146	-		GFF2503	0.21	+0.6
2,527,146	-		GFF2503	0.21	-0.7
2,527,146	-		GFF2503	0.21	+0.2
2,527,146	-		GFF2503	0.21	-0.5
2,527,146	-		GFF2503	0.21	+0.0
2,527,146	-		GFF2503	0.21	+0.1
2,527,146	-		GFF2503	0.21	+0.5
2,527,146	-		GFF2503	0.21	+0.3
2,527,155	-		GFF2503	0.22	-0.8
2,527,155	-		GFF2503	0.22	+0.6
2,527,198	+		GFF2503	0.27	-1.8
2,527,201	-		GFF2503	0.28	-0.1
2,527,206	-		GFF2503	0.28	-0.0
2,527,206	-		GFF2503	0.28	+0.3
2,527,226	+		GFF2503	0.31	-0.9
2,527,226	+		GFF2503	0.31	+1.2
2,527,226	+		GFF2503	0.31	+0.2
2,527,226	+		GFF2503	0.31	-1.9
2,527,226	+		GFF2503	0.31	+0.1
2,527,226	+		GFF2503	0.31	-0.5
2,527,226	+		GFF2503	0.31	-2.1
2,527,226	+		GFF2503	0.31	+0.6
2,527,229	-		GFF2503	0.31	-0.0
2,527,229	-		GFF2503	0.31	+0.3
2,527,234	-		GFF2503	0.32	-0.2
2,527,234	-		GFF2503	0.32	-0.9
2,527,234	-		GFF2503	0.32	+0.4
2,527,234	-		GFF2503	0.32	+0.2
2,527,234	-		GFF2503	0.32	-0.3
2,527,234	-		GFF2503	0.32	-0.2
2,527,234	-		GFF2503	0.32	-0.5
2,527,237	+		GFF2503	0.32	+0.2
2,527,237	+		GFF2503	0.32	-0.5
2,527,237	+		GFF2503	0.32	+0.0
2,527,237	+		GFF2503	0.32	-1.0
2,527,245	-		GFF2503	0.33	+0.2
2,527,245	-		GFF2503	0.33	+0.9
2,527,245	-		GFF2503	0.33	+1.3
2,527,245	-		GFF2503	0.33	-0.5
2,527,245	-		GFF2503	0.33	-0.5
2,527,246	+		GFF2503	0.33	-1.0
2,527,248	+		GFF2503	0.33	-1.6
2,527,255	-		GFF2503	0.34	+0.6
2,527,256	+		GFF2503	0.34	-1.8
2,527,256	+		GFF2503	0.34	+0.5
2,527,261	+		GFF2503	0.35	+0.0
2,527,261	+		GFF2503	0.35	-3.4
2,527,261	+		GFF2503	0.35	-0.7
2,527,261	+		GFF2503	0.35	-0.7
2,527,262	-		GFF2503	0.35	-1.2
2,527,266	+		GFF2503	0.35	-1.0
2,527,277	-		GFF2503	0.37	-0.8
2,527,281	+		GFF2503	0.37	+0.1
2,527,314	+		GFF2503	0.41	+0.6
2,527,322	-		GFF2503	0.42	-1.0
2,527,326	+		GFF2503	0.42	-0.2
2,527,338	+		GFF2503	0.44	-0.2
2,527,346	-		GFF2503	0.45	-1.2
2,527,349	-		GFF2503	0.45	+0.6
2,527,360	+		GFF2503	0.47	+0.5
2,527,373	+		GFF2503	0.48	-0.7
2,527,373	+		GFF2503	0.48	-0.1
2,527,374	-		GFF2503	0.48	-1.3
2,527,381	-		GFF2503	0.49	-1.5
2,527,381	-		GFF2503	0.49	-0.5
2,527,388	+		GFF2503	0.50	-0.1
2,527,388	+		GFF2503	0.50	+0.7
2,527,388	+		GFF2503	0.50	+1.3
2,527,388	+		GFF2503	0.50	-1.2
2,527,388	+		GFF2503	0.50	-1.1
2,527,388	+		GFF2503	0.50	-1.9
2,527,388	+		GFF2503	0.50	+0.7
2,527,388	+		GFF2503	0.50	-0.5
2,527,388	+		GFF2503	0.50	-1.4
2,527,388	+		GFF2503	0.50	+0.2
2,527,388	+		GFF2503	0.50	-1.7
2,527,394	+		GFF2503	0.51	-2.5
2,527,394	+		GFF2503	0.51	-2.2
2,527,394	+		GFF2503	0.51	+1.0
2,527,395	+		GFF2503	0.51	-1.3
2,527,395	+		GFF2503	0.51	-1.9
2,527,395	+		GFF2503	0.51	-1.4
2,527,395	+		GFF2503	0.51	-0.1
2,527,396	-		GFF2503	0.51	-1.4
2,527,396	-		GFF2503	0.51	-1.4
2,527,396	-		GFF2503	0.51	+0.4
2,527,396	-		GFF2503	0.51	+0.2
2,527,396	-		GFF2503	0.51	-0.4
2,527,402	-		GFF2503	0.51	-1.7
2,527,402	-		GFF2503	0.51	-1.2
2,527,402	-		GFF2503	0.51	+1.1
2,527,402	-		GFF2503	0.51	-1.5
2,527,402	-		GFF2503	0.51	-0.8
2,527,403	-		GFF2503	0.52	-1.0
2,527,403	-		GFF2503	0.52	-0.7
2,527,403	-		GFF2503	0.52	+0.8
2,527,404	+		GFF2503	0.52	+0.9
2,527,412	-		GFF2503	0.53	+0.0
2,527,417	-		GFF2503	0.53	+1.1
2,527,418	+		GFF2503	0.53	-0.2
2,527,423	+		GFF2503	0.54	-0.2
2,527,423	+		GFF2503	0.54	-2.0
2,527,423	+		GFF2503	0.54	-0.1
2,527,428	+		GFF2503	0.55	-1.8
2,527,429	+		GFF2503	0.55	+1.0
2,527,431	-		GFF2503	0.55	-0.4
2,527,431	-		GFF2503	0.55	+0.4
2,527,431	-		GFF2503	0.55	+0.1
2,527,433	+		GFF2503	0.55	-0.7
2,527,468	+		GFF2503	0.59	+0.5
2,527,472	+		GFF2503	0.60	+0.1
2,527,480	-		GFF2503	0.61	-2.5
2,527,486	+		GFF2503	0.61	+0.9
2,527,489	-		GFF2503	0.62	+0.0
2,527,501	-		GFF2503	0.63	+0.7
2,527,501	-		GFF2503	0.63	+1.0
2,527,516	-		GFF2503	0.65	+1.0
2,527,517	-		GFF2503	0.65	-0.0
2,527,526	+		GFF2503	0.66	-0.8
2,527,526	+		GFF2503	0.66	+0.7
2,527,533	+		GFF2503	0.67	+0.2
2,527,533	+		GFF2503	0.67	+0.4
2,527,534	-		GFF2503	0.67	-0.1
2,527,541	-		GFF2503	0.68	+0.1
2,527,541	-		GFF2503	0.68	-0.4
2,527,543	+		GFF2503	0.68	-0.2
2,527,551	-		GFF2503	0.69	+0.1
2,527,551	-		GFF2503	0.69	+1.6
2,527,552	-		GFF2503	0.69	-0.6
2,527,574	+		GFF2503	0.72	-0.5
2,527,588	+		GFF2503	0.74	-1.1
2,527,588	+		GFF2503	0.74	+0.2
2,527,588	+		GFF2503	0.74	-2.8
2,527,594	+		GFF2503	0.74	-0.1
2,527,596	-		GFF2503	0.74	-2.2
2,527,596	-		GFF2503	0.74	-2.4
2,527,596	-		GFF2503	0.74	+0.0
2,527,629	+		GFF2503	0.78	+0.6
2,527,636	-		GFF2503	0.79	+0.2
2,527,639	+		GFF2503	0.80	-1.5
2,527,639	+		GFF2503	0.80	-1.1
2,527,639	+		GFF2503	0.80	-0.9
2,527,643	+		GFF2503	0.80	+0.7
2,527,643	+		GFF2503	0.80	-1.0
2,527,644	+		GFF2503	0.80	-0.5
2,527,644	+		GFF2503	0.80	-0.7
2,527,688	-		GFF2503	0.85	-0.3
2,527,717	+		GFF2503	0.89	-2.5
2,527,717	+		GFF2503	0.89	+0.4
2,527,718	+		GFF2503	0.89	+0.5
2,527,727	+				+0.1
2,527,735	-				+0.8
2,527,735	-				-1.0
2,527,735	-				+0.0
2,527,735	-				+0.4
2,527,735	-				-0.5
2,527,740	+				-1.4
2,527,740	+				-0.4
2,527,757	+				-1.3
2,527,772	+				-0.1
2,527,773	+				-0.7
2,527,891	+				-0.4
2,527,904	+				-0.3
2,527,907	-				-0.4
2,527,917	-				-1.3
2,527,917	-				-0.2
2,527,917	-				-1.3
2,527,933	+				-1.0
2,527,940	-				+0.4
2,527,945	+				-0.7
2,527,956	+				+0.5
2,527,961	-				+0.4
2,527,963	-				-0.3
2,527,971	+				+0.7
2,527,971	+				-0.1
2,527,971	+				+0.2
2,527,979	-				-0.1
2,527,979	-				+0.2
2,527,979	-				-0.1
2,528,001	-				-1.5
2,528,094	+				-0.0
2,528,094	-				-0.1
2,528,105	+				+0.3
2,528,133	+				+0.7
2,528,133	+				+0.3
2,528,143	+				+0.2
2,528,143	+				-2.4
2,528,146	-				-0.2
2,528,151	-				-1.3
2,528,151	-				-0.4
2,528,151	-				+0.2
2,528,151	-				+0.5
2,528,191	+				+0.9
2,528,204	+				-1.5
2,528,204	+				-1.1
2,528,204	+				-0.4
2,528,204	+				-1.8
2,528,204	+				-2.8
2,528,204	+				-0.8
2,528,204	+				-0.0
2,528,204	+				+0.0
2,528,209	+				-2.2
2,528,211	-				-0.3
2,528,212	-				-0.5
2,528,212	-				+0.0
2,528,212	-				+0.6
2,528,212	-				-1.0
2,528,212	-				+0.1
2,528,212	-				-0.6
2,528,212	-				+0.7
2,528,212	-				+1.7
2,528,212	-				+0.0
2,528,232	+				-0.3
2,528,232	+				-0.9
2,528,284	+		GFF2504	0.12	+0.3
2,528,285	-		GFF2504	0.12	+0.3
2,528,290	-		GFF2504	0.13	+0.3
2,528,291	-		GFF2504	0.13	-1.2
2,528,293	+		GFF2504	0.13	-0.4
2,528,293	+		GFF2504	0.13	-0.4
2,528,293	+		GFF2504	0.13	+1.0
2,528,301	-		GFF2504	0.13	-2.1
2,528,301	-		GFF2504	0.13	-1.5
2,528,301	-		GFF2504	0.13	+0.0
2,528,301	-		GFF2504	0.13	-0.2
2,528,301	-		GFF2504	0.13	-0.9
2,528,310	+		GFF2504	0.14	-1.2
2,528,311	-		GFF2504	0.14	-1.8
2,528,318	-		GFF2504	0.14	-0.1
2,528,320	+		GFF2504	0.15	+0.5
2,528,320	+		GFF2504	0.15	+0.0
2,528,323	-		GFF2504	0.15	+0.3
2,528,323	-		GFF2504	0.15	-0.7
2,528,323	-		GFF2504	0.15	+0.3
2,528,333	-		GFF2504	0.15	-0.7
2,528,373	-		GFF2504	0.18	-0.5
2,528,373	-		GFF2504	0.18	-0.0
2,528,378	+		GFF2504	0.18	-0.4
2,528,399	-		GFF2504	0.20	-1.1
2,528,407	+		GFF2504	0.20	-1.5
2,528,407	+		GFF2504	0.20	-1.0
2,528,409	-		GFF2504	0.21	-1.3
2,528,409	-		GFF2504	0.21	-0.2
2,528,415	-		GFF2504	0.21	+1.1
2,528,415	-		GFF2504	0.21	-0.0
2,528,420	-		GFF2504	0.21	-0.3
2,528,420	-		GFF2504	0.21	+0.0
2,528,435	-		GFF2504	0.22	-0.7
2,528,441	+		GFF2504	0.23	+0.0
2,528,451	+		GFF2504	0.23	+0.3
2,528,451	+		GFF2504	0.23	-0.0
2,528,464	-		GFF2504	0.24	+0.6
2,528,464	-		GFF2504	0.24	+0.4
2,528,464	-		GFF2504	0.24	-0.0
2,528,464	-		GFF2504	0.24	-1.3
2,528,464	-		GFF2504	0.24	-1.0
2,528,464	-		GFF2504	0.24	-0.3
2,528,464	-		GFF2504	0.24	-0.0
2,528,469	+		GFF2504	0.25	-0.8
2,528,486	-		GFF2504	0.26	-3.0
2,528,493	+		GFF2504	0.26	+0.7
2,528,493	+		GFF2504	0.26	-0.3
2,528,493	+		GFF2504	0.26	-1.2
2,528,493	+		GFF2504	0.26	-0.0
2,528,498	-		GFF2504	0.26	+0.0
2,528,499	+		GFF2504	0.27	+0.6
2,528,499	+		GFF2504	0.27	+0.4
2,528,501	-		GFF2504	0.27	+0.5
2,528,501	-		GFF2504	0.27	+0.7
2,528,501	-		GFF2504	0.27	-0.5
2,528,501	-		GFF2504	0.27	-0.1
2,528,501	-		GFF2504	0.27	+0.4
2,528,508	+		GFF2504	0.27	-0.2
2,528,517	+		GFF2504	0.28	-1.6
2,528,517	+		GFF2504	0.28	+1.7
2,528,519	-		GFF2504	0.28	+1.5
2,528,526	+		GFF2504	0.28	-0.1
2,528,535	-		GFF2504	0.29	+0.1
2,528,536	+		GFF2504	0.29	-1.1
2,528,551	+		GFF2504	0.30	-0.8
2,528,557	+		GFF2504	0.30	-0.4
2,528,576	+		GFF2504	0.32	+0.6
2,528,595	+		GFF2504	0.33	+0.2
2,528,595	+		GFF2504	0.33	+0.5
2,528,595	+		GFF2504	0.33	-1.5
2,528,600	+		GFF2504	0.33	-1.9
2,528,603	-		GFF2504	0.33	-0.2
2,528,603	-		GFF2504	0.33	+0.0
2,528,603	-		GFF2504	0.33	+0.6
2,528,603	-		GFF2504	0.33	+0.9
2,528,618	+		GFF2504	0.34	-0.5
2,528,623	+		GFF2504	0.35	-1.1
2,528,626	-		GFF2504	0.35	+0.1
2,528,639	-		GFF2504	0.36	-0.9
2,528,644	-		GFF2504	0.36	+1.2
2,528,661	-		GFF2504	0.37	-1.0
2,528,669	+		GFF2504	0.38	-0.8
2,528,670	+		GFF2504	0.38	-2.1
2,528,670	+		GFF2504	0.38	-1.7
2,528,672	-		GFF2504	0.38	+0.0
2,528,677	-		GFF2504	0.38	+1.4
2,528,677	-		GFF2504	0.38	-0.6
2,528,677	-		GFF2504	0.38	+1.0
2,528,677	-		GFF2504	0.38	-1.3
2,528,678	-		GFF2504	0.38	+0.9
2,528,701	-		GFF2504	0.40	+0.3
2,528,703	-		GFF2504	0.40	-0.0
2,528,706	+		GFF2504	0.40	+0.9
2,528,708	+		GFF2504	0.40	+0.5
2,528,714	-		GFF2504	0.41	+0.2
2,528,714	-		GFF2504	0.41	-1.8
2,528,714	-		GFF2504	0.41	-2.0
2,528,745	+		GFF2504	0.43	-1.4
2,528,745	+		GFF2504	0.43	-2.2
2,528,745	+		GFF2504	0.43	-0.5
2,528,752	-		GFF2504	0.43	-1.8
2,528,753	-		GFF2504	0.43	+1.0
2,528,753	-		GFF2504	0.43	-0.0
2,528,753	-		GFF2504	0.43	-0.7
2,528,771	+		GFF2504	0.45	+0.2
2,528,772	-		GFF2504	0.45	-0.1
2,528,804	+		GFF2504	0.47	+0.2
2,528,828	+		GFF2504	0.48	-0.2
2,528,828	+		GFF2504	0.48	-1.0
2,528,828	+		GFF2504	0.48	-0.4
2,528,836	-		GFF2504	0.49	-0.0
2,528,857	-		GFF2504	0.50	-2.3
2,528,857	-		GFF2504	0.50	-1.5
2,528,883	+		GFF2504	0.52	+0.8
2,528,885	-		GFF2504	0.52	+0.5
2,528,888	-		GFF2504	0.53	-0.1
2,528,889	+		GFF2504	0.53	-0.9
2,528,906	-		GFF2504	0.54	-0.3
2,528,907	+		GFF2504	0.54	-1.1
2,528,908	+		GFF2504	0.54	-1.1
2,528,917	+		GFF2504	0.54	-1.2
2,528,925	-		GFF2504	0.55	-1.1
2,528,970	-		GFF2504	0.58	-0.2
2,528,973	+		GFF2504	0.58	-0.3
2,528,981	+		GFF2504	0.59	-0.5
2,528,989	-		GFF2504	0.59	-0.1
2,528,989	-		GFF2504	0.59	-0.8
2,528,989	-		GFF2504	0.59	+1.1
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2,529,011	-		GFF2504	0.61	-1.8
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2,529,293	-		GFF2504	0.80	-0.9
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2,529,438	+		GFF2504	0.89	+0.1
2,529,467	+				-0.0
2,529,497	+				-1.4
2,529,497	+				+0.5
2,529,509	+				-0.4
2,529,510	+				+0.3
2,529,510	+				-0.3
2,529,510	+				-0.5
2,529,510	+				-1.7
2,529,510	+				-0.1
2,529,510	+				-2.6
2,529,510	+				-1.5
2,529,510	+				-1.0
2,529,511	-				+0.6
2,529,516	-				-0.9
2,529,518	-				-0.6
2,529,518	-				+0.0
2,529,518	-				-1.2
2,529,518	-				-0.1
2,529,518	-				+0.5
2,529,518	-				+0.3
2,529,518	-				-1.2
2,529,518	-				-0.7
2,529,518	-				-1.7
2,529,518	-				-0.4
2,529,536	-				+1.1
2,529,543	-				-1.1
2,529,553	-				-1.2
2,529,560	-				-0.9
2,529,574	-				+0.5
2,529,599	+				+0.1
2,529,607	-				-0.4
2,529,607	-				-2.3
2,529,640	+				+0.0
2,529,640	+				-1.0
2,529,640	+				+1.3
2,529,656	-				-0.5
2,529,658	+				+0.7
2,529,668	-				+0.3
2,529,668	-				-2.0
2,529,670	+				+1.3
2,529,671	+				-1.5
2,529,671	+				+0.2
2,529,671	+				+0.2
2,529,671	+				-1.4
2,529,671	+				+0.5
2,529,671	+				-1.2
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2,529,671	+				-0.9
2,529,671	+				-0.8
2,529,671	+				+0.0
2,529,671	+				-1.2
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2,529,679	-		GFF2505	0.11	-0.7
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2,529,713	+		GFF2505	0.16	-1.0
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2,529,725	+		GFF2505	0.18	-0.7
2,529,740	+		GFF2505	0.20	-2.1
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2,529,748	-		GFF2505	0.21	+0.1
2,529,748	-		GFF2505	0.21	-1.9
2,529,748	-		GFF2505	0.21	+0.3
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2,529,771	-		GFF2505	0.24	-2.7
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2,529,799	+		GFF2505	0.28	-1.4
2,529,799	+		GFF2505	0.28	+0.2
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2,529,807	-		GFF2505	0.29	-0.3
2,529,807	-		GFF2505	0.29	-0.5
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2,529,810	-		GFF2505	0.30	-0.7
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2,529,822	-		GFF2505	0.31	-0.9
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2,529,974	+		GFF2505	0.53	+1.1
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2,530,023	-		GFF2505	0.60	-0.5
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2,530,049	+		GFF2505	0.64	+1.2
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2,530,269	+				-0.7
2,530,274	+				+0.9
2,530,310	-				-1.7
2,530,310	-				+0.2
2,530,341	-				+0.8
2,530,357	-				+0.8
2,530,425	+				-1.8
2,530,433	-				+1.3
2,530,473	+				-0.4
2,530,482	+				+0.3
2,530,482	+				-1.0
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2,530,482	+				-0.6
2,530,482	+				-0.1
2,530,482	+				-1.7
2,530,482	+				-1.1
2,530,482	+				+1.5
2,530,482	+				-1.4
2,530,482	+				-0.9
2,530,482	+				+1.4
2,530,482	+				+0.3
2,530,482	+				-0.6
2,530,482	+				-1.7
2,530,482	+				-0.1
2,530,490	-				-2.0
2,530,490	-				-0.1
2,530,490	-				-2.2
2,530,490	-				-0.3
2,530,490	-				-0.4
2,530,490	-				-0.5
2,530,490	-				+0.1
2,530,490	-				+0.0
2,530,490	-				+0.2
2,530,490	-				-0.6
2,530,490	-				-2.4
2,530,493	+				-0.0
2,530,516	-				+1.3
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