Strain Fitness in Sphingobium sp. HT1-2 around GFF2478

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,500,747	-				-1.2
2,500,747	-				-1.5
2,500,754	+				-1.5
2,500,757	-				-0.4
2,500,757	-				+0.7
2,500,762	-				-0.4
2,500,769	+				+0.2
2,500,788	-				+1.2
2,500,788	-				-0.2
2,500,788	-				-0.8
2,500,788	-				+0.2
2,500,788	-				-1.7
2,500,788	-				-0.5
2,500,791	+				+0.2
2,500,791	+				-1.5
2,500,791	+				+0.2
2,500,794	-				-0.1
2,500,799	-				-0.1
2,500,799	-				-2.0
2,500,799	-				-0.8
2,500,799	-				-2.4
2,500,799	-				-1.1
2,500,799	-				-0.2
2,500,838	-		GFF2477	0.12	-0.4
2,500,861	+		GFF2477	0.15	+0.3
2,500,861	+		GFF2477	0.15	-1.2
2,500,867	+		GFF2477	0.16	-1.9
2,500,869	-		GFF2477	0.16	+0.5
2,500,869	-		GFF2477	0.16	-0.7
2,500,872	+		GFF2477	0.17	-0.3
2,500,872	+		GFF2477	0.17	+0.3
2,500,903	+		GFF2477	0.21	+0.5
2,500,925	+		GFF2477	0.24	+0.4
2,500,931	+		GFF2477	0.25	+0.4
2,500,939	+		GFF2477	0.26	-0.1
2,500,941	-		GFF2477	0.26	+0.2
2,500,974	+		GFF2477	0.31	+0.5
2,500,974	+		GFF2477	0.31	+0.4
2,500,974	+		GFF2477	0.31	+0.4
2,500,974	+		GFF2477	0.31	-0.7
2,500,980	-		GFF2477	0.31	-1.3
2,500,982	-		GFF2477	0.32	+0.4
2,501,007	+		GFF2477	0.35	+1.1
2,501,012	+		GFF2477	0.36	-0.9
2,501,020	-		GFF2477	0.37	-0.7
2,501,024	+		GFF2477	0.37	+0.0
2,501,032	-		GFF2477	0.39	-1.3
2,501,034	+		GFF2477	0.39	-0.7
2,501,034	+		GFF2477	0.39	-1.5
2,501,042	-		GFF2477	0.40	+0.6
2,501,047	-		GFF2477	0.41	-0.9
2,501,047	-		GFF2477	0.41	+1.4
2,501,056	+		GFF2477	0.42	-0.1
2,501,064	-		GFF2477	0.43	+0.6
2,501,064	-		GFF2477	0.43	-0.8
2,501,064	-		GFF2477	0.43	+0.3
2,501,064	-		GFF2477	0.43	-0.8
2,501,068	+		GFF2477	0.43	+0.6
2,501,073	+		GFF2477	0.44	-2.0
2,501,078	+		GFF2477	0.45	-0.2
2,501,081	+		GFF2477	0.45	-1.0
2,501,081	-		GFF2477	0.45	+0.8
2,501,090	-		GFF2477	0.47	+0.6
2,501,109	+		GFF2477	0.49	-0.4
2,501,118	+		GFF2477	0.50	-0.7
2,501,118	+		GFF2477	0.50	-0.6
2,501,118	+		GFF2477	0.50	-0.9
2,501,118	+		GFF2477	0.50	-0.2
2,501,148	-		GFF2477	0.54	+0.4
2,501,157	+		GFF2477	0.56	-1.1
2,501,157	+		GFF2477	0.56	+1.2
2,501,157	+		GFF2477	0.56	+0.0
2,501,157	+		GFF2477	0.56	+0.2
2,501,160	-		GFF2477	0.56	-1.1
2,501,165	-		GFF2477	0.57	-1.4
2,501,165	-		GFF2477	0.57	-0.5
2,501,166	+		GFF2477	0.57	+0.3
2,501,171	-		GFF2477	0.58	-0.0
2,501,174	-		GFF2477	0.58	-1.3
2,501,184	+		GFF2477	0.59	+0.5
2,501,189	+		GFF2477	0.60	-0.1
2,501,189	+		GFF2477	0.60	-0.5
2,501,189	+		GFF2477	0.60	+0.0
2,501,192	-		GFF2477	0.60	-0.8
2,501,192	-		GFF2477	0.60	+1.4
2,501,192	-		GFF2477	0.60	+0.5
2,501,203	+		GFF2477	0.62	+0.6
2,501,244	-		GFF2477	0.68	-0.5
2,501,244	-		GFF2477	0.68	-0.9
2,501,255	+		GFF2477	0.69	-1.3
2,501,255	+		GFF2477	0.69	-1.0
2,501,255	+		GFF2477	0.69	-1.4
2,501,255	+		GFF2477	0.69	-2.4
2,501,263	-		GFF2477	0.70	-1.1
2,501,263	-		GFF2477	0.70	+0.3
2,501,263	-		GFF2477	0.70	+1.4
2,501,263	-		GFF2477	0.70	+0.7
2,501,263	-		GFF2477	0.70	-0.0
2,501,271	-		GFF2477	0.71	+0.4
2,501,278	-		GFF2477	0.72	-0.7
2,501,284	+		GFF2477	0.73	-1.2
2,501,284	-		GFF2477	0.73	+1.9
2,501,305	-		GFF2477	0.76	-1.4
2,501,364	-		GFF2477	0.84	+1.4
2,501,375	-		GFF2477	0.86	+1.3
2,501,375	-		GFF2477	0.86	+0.2
2,501,385	+		GFF2477	0.87	-0.4
2,501,385	+		GFF2477	0.87	+0.2
2,501,385	-		GFF2477	0.87	+0.3
2,501,391	-		GFF2477	0.88	+0.1
2,501,393	-		GFF2477	0.88	-1.9
2,501,393	-		GFF2477	0.88	-1.0
2,501,393	-		GFF2477	0.88	-1.9
2,501,393	-		GFF2477	0.88	+0.0
2,501,393	-		GFF2477	0.88	-0.1
2,501,428	+				-0.5
2,501,430	+				+1.2
2,501,430	+				-0.1
2,501,430	+				+0.1
2,501,430	+				-0.1
2,501,436	-				-0.8
2,501,438	-				+0.4
2,501,442	+				+0.2
2,501,442	+				-1.1
2,501,447	+				-1.0
2,501,457	+				-0.2
2,501,465	-				-1.7
2,501,465	-				-1.0
2,501,484	+				+0.2
2,501,495	-				-2.1
2,501,515	+				+0.5
2,501,520	+				-0.7
2,501,520	+				+1.2
2,501,523	-				-0.3
2,501,523	-				-0.2
2,501,525	+				-0.5
2,501,529	-				+0.9
2,501,529	-				+0.1
2,501,533	-				-2.7
2,501,533	-				-0.5
2,501,609	+				-0.5
2,501,622	-				+0.0
2,501,624	-				+0.2
2,501,644	+				-1.5
2,501,652	-				-0.5
2,501,669	+				-0.8
2,501,677	-				-1.0
2,501,686	+				+0.5
2,501,694	+				-0.2
2,501,704	-				+0.5
2,501,722	-				-0.3
2,501,737	+				-1.0
2,501,745	-				+0.7
2,501,745	-				+0.0
2,501,745	-				+0.5
2,501,745	-				+0.6
2,501,745	-				+0.4
2,501,755	-				+0.5
2,501,767	+				-0.6
2,501,820	-				-0.6
2,501,821	-				+0.2
2,501,828	+		GFF2478	0.10	-2.4
2,501,828	+		GFF2478	0.10	-0.1
2,501,828	+		GFF2478	0.10	+0.6
2,501,828	+		GFF2478	0.10	-0.9
2,501,828	+		GFF2478	0.10	-1.5
2,501,828	+		GFF2478	0.10	-1.5
2,501,828	+		GFF2478	0.10	-1.5
2,501,828	+		GFF2478	0.10	+0.1
2,501,828	+		GFF2478	0.10	-1.5
2,501,828	+		GFF2478	0.10	-0.5
2,501,828	+		GFF2478	0.10	-1.3
2,501,836	-		GFF2478	0.11	+0.1
2,501,836	-		GFF2478	0.11	-0.3
2,501,836	-		GFF2478	0.11	-1.1
2,501,836	-		GFF2478	0.11	+0.3
2,501,836	-		GFF2478	0.11	+1.0
2,501,836	-		GFF2478	0.11	-0.5
2,501,858	+		GFF2478	0.14	+0.0
2,501,877	+		GFF2478	0.16	-2.4
2,501,880	-		GFF2478	0.16	-0.8
2,501,885	-		GFF2478	0.17	-0.6
2,501,885	-		GFF2478	0.17	+0.9
2,501,890	-		GFF2478	0.17	+0.0
2,501,907	-		GFF2478	0.19	-0.1
2,501,915	+		GFF2478	0.20	-0.1
2,501,928	+		GFF2478	0.21	-0.2
2,501,946	-		GFF2478	0.23	+0.4
2,501,955	+		GFF2478	0.24	+1.1
2,501,955	+		GFF2478	0.24	-0.3
2,501,955	+		GFF2478	0.24	-0.0
2,501,955	+		GFF2478	0.24	+0.5
2,501,955	+		GFF2478	0.24	-1.2
2,501,955	+		GFF2478	0.24	-0.4
2,501,955	+		GFF2478	0.24	-2.0
2,501,955	+		GFF2478	0.24	+0.2
2,501,955	+		GFF2478	0.24	-1.0
2,501,955	+		GFF2478	0.24	-1.2
2,501,955	+		GFF2478	0.24	-0.5
2,501,961	-		GFF2478	0.25	+0.6
2,501,963	+		GFF2478	0.25	-0.5
2,501,963	-		GFF2478	0.25	+1.0
2,501,963	-		GFF2478	0.25	+1.0
2,501,963	-		GFF2478	0.25	+0.8
2,501,963	-		GFF2478	0.25	-1.0
2,501,963	-		GFF2478	0.25	+0.3
2,501,963	-		GFF2478	0.25	+0.2
2,501,963	-		GFF2478	0.25	-2.4
2,501,963	-		GFF2478	0.25	-0.1
2,501,963	-		GFF2478	0.25	-0.5
2,501,963	-		GFF2478	0.25	+0.5
2,501,970	-		GFF2478	0.26	+0.2
2,501,971	-		GFF2478	0.26	+0.3
2,501,971	-		GFF2478	0.26	+0.8
2,501,971	-		GFF2478	0.26	-0.6
2,501,975	+		GFF2478	0.27	-0.5
2,501,981	+		GFF2478	0.27	+0.2
2,501,996	-		GFF2478	0.29	-0.0
2,501,996	-		GFF2478	0.29	+0.9
2,502,006	-		GFF2478	0.30	-0.6
2,502,015	+		GFF2478	0.31	-1.1
2,502,032	+		GFF2478	0.33	-1.2
2,502,032	+		GFF2478	0.33	-0.1
2,502,032	+		GFF2478	0.33	-0.8
2,502,034	-		GFF2478	0.33	-0.5
2,502,040	-		GFF2478	0.34	-1.0
2,502,043	+		GFF2478	0.34	+0.7
2,502,043	+		GFF2478	0.34	+0.6
2,502,043	+		GFF2478	0.34	-1.4
2,502,045	+		GFF2478	0.34	-0.2
2,502,051	-		GFF2478	0.35	-1.8
2,502,077	+		GFF2478	0.38	-0.9
2,502,080	-		GFF2478	0.38	-1.4
2,502,135	+		GFF2478	0.44	-0.4
2,502,149	-		GFF2478	0.46	-1.4
2,502,163	+		GFF2478	0.48	-0.1
2,502,179	+		GFF2478	0.49	-0.6
2,502,187	-		GFF2478	0.50	-0.3
2,502,196	+		GFF2478	0.51	-0.0
2,502,196	+		GFF2478	0.51	+0.5
2,502,201	+		GFF2478	0.52	-0.7
2,502,204	-		GFF2478	0.52	-0.1
2,502,206	+		GFF2478	0.52	-0.1
2,502,209	-		GFF2478	0.53	-0.6
2,502,214	-		GFF2478	0.53	-1.5
2,502,224	+		GFF2478	0.54	+0.8
2,502,225	+		GFF2478	0.54	-1.4
2,502,232	-		GFF2478	0.55	+0.2
2,502,252	-		GFF2478	0.57	-0.8
2,502,258	-		GFF2478	0.58	-0.1
2,502,261	+		GFF2478	0.58	-0.1
2,502,261	+		GFF2478	0.58	-0.5
2,502,269	-		GFF2478	0.59	-2.4
2,502,305	+		GFF2478	0.63	-0.5
2,502,305	+		GFF2478	0.63	-1.7
2,502,313	-		GFF2478	0.64	+0.2
2,502,319	-		GFF2478	0.65	+0.5
2,502,323	-		GFF2478	0.65	+0.5
2,502,343	-		GFF2478	0.67	-1.0
2,502,375	+		GFF2478	0.71	-0.0
2,502,375	+		GFF2478	0.71	-0.9
2,502,375	+		GFF2478	0.71	+0.6
2,502,375	+		GFF2478	0.71	-0.8
2,502,375	+		GFF2478	0.71	+0.2
2,502,376	+		GFF2478	0.71	-0.2
2,502,383	-		GFF2478	0.72	-0.8
2,502,383	-		GFF2478	0.72	-0.1
2,502,383	-		GFF2478	0.72	-1.4
2,502,383	-		GFF2478	0.72	-1.2
2,502,383	-		GFF2478	0.72	-0.4
2,502,384	-		GFF2478	0.72	-1.0
2,502,385	-		GFF2478	0.72	-1.1
2,502,390	-		GFF2478	0.73	-0.4
2,502,390	-		GFF2478	0.73	-0.8
2,502,390	-		GFF2478	0.73	+0.6
2,502,410	-		GFF2478	0.75	-1.0
2,502,412	+		GFF2478	0.75	+0.6
2,502,415	-		GFF2478	0.75	+0.5
2,502,420	-		GFF2478	0.76	+0.7
2,502,425	+		GFF2478	0.77	-1.5
2,502,425	+		GFF2478	0.77	+1.1
2,502,425	+		GFF2478	0.77	+0.2
2,502,433	-		GFF2478	0.77	-1.1
2,502,470	-		GFF2478	0.82	-0.7
2,502,474	+		GFF2478	0.82	-1.1
2,502,475	+		GFF2478	0.82	-1.3
2,502,482	-		GFF2478	0.83	-1.7
2,502,482	-		GFF2478	0.83	+0.5
2,502,488	+		GFF2478	0.83	-0.7
2,502,495	+		GFF2478	0.84	-0.8
2,502,497	+		GFF2478	0.84	-1.2
2,502,500	+		GFF2478	0.85	-2.2
2,502,503	-		GFF2478	0.85	+0.6
2,502,503	-		GFF2478	0.85	-0.7
2,502,506	+		GFF2478	0.85	-0.2
2,502,514	+		GFF2478	0.86	-0.5
2,502,564	-				-1.3
2,502,575	-				+0.4
2,502,586	+				-0.3
2,502,618	+				-1.0
2,502,618	+				+0.2
2,502,618	+				-0.7
2,502,618	+				-0.2
2,502,619	+				+1.1
2,502,623	+				+0.9
2,502,623	+				-1.4
2,502,626	-				+0.5
2,502,626	-				-0.9
2,502,626	-				+0.3
2,502,626	-				+0.8
2,502,637	-				-0.4
2,502,651	-				-0.3
2,502,655	+				-1.6
2,502,657	-				-0.9
2,502,660	+				-0.3
2,502,660	+				+1.1
2,502,661	-				+1.2
2,502,663	-		GFF2479	0.10	+1.0
2,502,663	-		GFF2479	0.10	+0.0
2,502,668	-		GFF2479	0.12	+0.5
2,502,668	-		GFF2479	0.12	-0.1
2,502,673	+		GFF2479	0.14	-0.9
2,502,681	-		GFF2479	0.17	+0.2
2,502,701	+		GFF2479	0.24	-2.4
2,502,701	+		GFF2479	0.24	+1.6
2,502,701	+		GFF2479	0.24	-1.3
2,502,701	+		GFF2479	0.24	-1.4
2,502,701	+		GFF2479	0.24	-0.8
2,502,701	+		GFF2479	0.24	-0.2
2,502,701	+		GFF2479	0.24	+0.5
2,502,701	+		GFF2479	0.24	-1.0
2,502,701	+		GFF2479	0.24	-1.4
2,502,701	+		GFF2479	0.24	+0.6
2,502,701	+		GFF2479	0.24	-1.9
2,502,701	+		GFF2479	0.24	-0.4
2,502,701	+		GFF2479	0.24	+0.3
2,502,701	+		GFF2479	0.24	-0.6
2,502,701	+		GFF2479	0.24	-0.1
2,502,701	+		GFF2479	0.24	+1.8
2,502,709	+		GFF2479	0.26	+0.5
2,502,709	-		GFF2479	0.26	-0.1
2,502,709	-		GFF2479	0.26	+0.9
2,502,709	-		GFF2479	0.26	+0.7
2,502,709	-		GFF2479	0.26	+0.8
2,502,709	-		GFF2479	0.26	-0.0
2,502,709	-		GFF2479	0.26	+1.2
2,502,709	-		GFF2479	0.26	+0.4
2,502,709	-		GFF2479	0.26	+0.9
2,502,709	-		GFF2479	0.26	-1.7
2,502,709	-		GFF2479	0.26	-0.2
2,502,709	-		GFF2479	0.26	+0.1
2,502,709	-		GFF2479	0.26	+0.1
2,502,709	-		GFF2479	0.26	+1.3
2,502,709	-		GFF2479	0.26	+0.6
2,502,709	-		GFF2479	0.26	+1.3
2,502,709	-		GFF2479	0.26	-0.2
2,502,709	-		GFF2479	0.26	+0.7
2,502,717	-		GFF2479	0.29	-1.0
2,502,741	+		GFF2479	0.38	+0.2
2,502,742	-		GFF2479	0.38	-1.0
2,502,756	-		GFF2479	0.43	-0.9
2,502,756	-		GFF2479	0.43	-1.0
2,502,769	-		GFF2479	0.47	-1.0
2,502,772	+		GFF2479	0.48	-0.2
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