Strain Fitness in Sphingobium sp. HT1-2 around GFF2469

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,491,906	+		GFF2468	0.31	-1.7
2,491,906	+		GFF2468	0.31	-2.3
2,491,906	+		GFF2468	0.31	-2.3
2,491,923	+		GFF2468	0.33	-2.3
2,491,926	-		GFF2468	0.33	-2.3
2,491,933	+		GFF2468	0.34	-2.7
2,491,933	+		GFF2468	0.34	-2.7
2,491,941	-		GFF2468	0.35	-3.4
2,491,960	+		GFF2468	0.36	-3.1
2,492,010	+		GFF2468	0.41	-2.5
2,492,043	-		GFF2468	0.44	-2.3
2,492,059	+		GFF2468	0.45	-1.8
2,492,067	-		GFF2468	0.46	-2.3
2,492,069	+		GFF2468	0.46	-1.4
2,492,069	+		GFF2468	0.46	-2.3
2,492,077	+		GFF2468	0.47	-1.0
2,492,085	-		GFF2468	0.48	-3.0
2,492,100	+		GFF2468	0.49	-3.0
2,492,108	-		GFF2468	0.50	-1.8
2,492,125	+		GFF2468	0.51	-2.2
2,492,133	-		GFF2468	0.52	-2.8
2,492,133	-		GFF2468	0.52	-1.7
2,492,133	-		GFF2468	0.52	-1.9
2,492,133	-		GFF2468	0.52	-1.7
2,492,133	-		GFF2468	0.52	-2.3
2,492,133	-		GFF2468	0.52	-1.4
2,492,133	-		GFF2468	0.52	-1.9
2,492,155	-		GFF2468	0.54	-0.1
2,492,157	+		GFF2468	0.54	-1.7
2,492,162	+		GFF2468	0.55	-2.2
2,492,162	+		GFF2468	0.55	-2.3
2,492,197	-		GFF2468	0.58	-1.4
2,492,197	-		GFF2468	0.58	-2.5
2,492,208	+		GFF2468	0.59	-1.4
2,492,216	-		GFF2468	0.60	-1.5
2,492,244	-		GFF2468	0.62	-1.8
2,492,261	+		GFF2468	0.64	-1.9
2,492,268	+		GFF2468	0.64	-1.9
2,492,268	+		GFF2468	0.64	-0.7
2,492,276	-		GFF2468	0.65	-3.1
2,492,276	-		GFF2468	0.65	-2.3
2,492,305	+		GFF2468	0.68	-1.5
2,492,309	+		GFF2468	0.68	-1.4
2,492,317	-		GFF2468	0.69	-0.1
2,492,346	-		GFF2468	0.72	-1.5
2,492,420	+		GFF2468	0.78	-2.2
2,492,439	-		GFF2468	0.80	-3.0
2,492,446	-		GFF2468	0.81	-2.2
2,492,487	+		GFF2468	0.84	-2.6
2,492,487	+		GFF2468	0.84	-2.0
2,492,487	+		GFF2468	0.84	-2.3
2,492,495	-		GFF2468	0.85	-2.4
2,492,495	-		GFF2468	0.85	-2.0
2,492,515	-		GFF2468	0.87	-3.0
2,492,563	+				-2.3
2,492,563	+				-2.0
2,492,563	+				-1.8
2,492,563	+				-1.5
2,492,563	+				-2.6
2,492,563	+				-1.9
2,492,563	+				-2.0
2,492,571	-				-2.7
2,492,571	-				-2.7
2,492,571	-				-2.0
2,492,571	-				-1.8
2,492,571	-				-2.1
2,492,571	-				-1.9
2,492,571	-				-2.1
2,492,576	-				-1.9
2,492,576	-				-1.7
2,492,588	+				-2.8
2,492,588	+				-2.9
2,492,588	+				-3.8
2,492,613	+				-2.0
2,492,613	+				-2.7
2,492,617	+				-1.5
2,492,623	+				-2.0
2,492,634	+				-0.8
2,492,659	+				-2.7
2,492,661	+				+0.7
2,492,664	+				+1.2
2,492,667	-				-0.3
2,492,667	-				+0.7
2,492,667	-				-0.5
2,492,672	-				-1.3
2,492,672	-				-1.3
2,492,683	+				+0.6
2,492,683	+				+0.6
2,492,705	+				-0.0
2,492,705	+				-0.1
2,492,705	+				+1.3
2,492,705	+				-0.4
2,492,713	-				+0.6
2,492,713	-				-2.0
2,492,727	-				+0.8
2,492,731	-				+0.2
2,492,740	+				+0.9
2,492,746	+				-0.4
2,492,747	+				-1.2
2,492,751	+				-1.1
2,492,761	-				-0.5
2,492,761	-				+0.1
2,492,763	+				+0.5
2,492,763	+				-0.6
2,492,763	+				-1.5
2,492,763	+				+0.5
2,492,763	+				-0.4
2,492,763	+				-1.3
2,492,763	+				-1.2
2,492,763	+				-2.9
2,492,763	+				+0.0
2,492,763	+				+0.0
2,492,763	+				+1.3
2,492,763	+				-0.1
2,492,763	+				-1.4
2,492,764	-				+0.0
2,492,771	-				-1.5
2,492,771	-				+0.5
2,492,771	-				-2.3
2,492,771	-				+0.2
2,492,771	-				-1.8
2,492,771	-				+0.6
2,492,771	-				-1.7
2,492,771	-				-1.2
2,492,771	-				+0.8
2,492,771	-				+0.2
2,492,771	-				-1.3
2,492,771	-				-1.5
2,492,771	-				-0.1
2,492,771	-				+0.3
2,492,771	-				-0.1
2,492,771	-				+0.2
2,492,771	-				+0.5
2,492,771	-				-0.2
2,492,771	-				-1.3
2,492,771	-				-0.0
2,492,771	-				+0.7
2,492,778	-				-0.7
2,492,794	-				-1.3
2,492,802	+				+0.7
2,492,802	-				-0.2
2,492,809	+				-1.5
2,492,812	-				+0.7
2,492,817	-				-1.9
2,492,851	+				-1.7
2,492,851	+				-1.7
2,492,909	+				+0.5
2,492,923	+				-0.6
2,492,923	+				-2.5
2,492,923	+				-0.1
2,492,928	+				-1.7
2,492,928	+				+0.2
2,492,928	+				+0.1
2,492,928	+				-0.5
2,492,970	+				-1.0
2,492,994	+		GFF2469	0.11	+0.0
2,492,994	+		GFF2469	0.11	+0.3
2,493,038	+		GFF2469	0.14	+0.9
2,493,144	+		GFF2469	0.22	-0.4
2,493,199	+		GFF2469	0.27	-1.3
2,493,199	+		GFF2469	0.27	-1.9
2,493,481	+		GFF2469	0.48	-0.4
2,493,486	+		GFF2469	0.49	-0.2
2,493,486	+		GFF2469	0.49	-0.7
2,493,486	+		GFF2469	0.49	-0.1
2,493,702	+		GFF2469	0.65	-1.3
2,493,708	+		GFF2469	0.66	-0.5
2,493,765	+		GFF2469	0.70	-2.2
2,493,765	+		GFF2469	0.70	-2.0
2,493,865	+		GFF2469	0.78	-1.3
2,493,865	+		GFF2469	0.78	-1.0
2,493,873	-		GFF2469	0.79	-1.4
2,493,982	+		GFF2469	0.87	+0.5
2,494,000	+		GFF2469	0.88	-0.8
2,494,005	+		GFF2469	0.89	-2.4
2,494,021	+				-0.5
2,494,026	+				-1.9
2,494,046	+				-1.5
2,494,079	+				-1.4
2,494,098	+				+0.2
2,494,133	+				+0.2
2,494,138	+				-0.3
2,494,138	+				-0.2
2,494,138	+				+1.4
2,494,143	+				-0.9
2,494,711	-		GFF2470	0.89	+0.2
2,494,711	-		GFF2470	0.89	-2.4
2,494,738	+				-1.7
2,494,746	-				-0.5
2,494,759	+				-1.2
2,494,858	+				-1.4
2,494,909	-				-0.4
2,494,916	+				-0.5
2,494,973	+				+0.4
2,494,977	-				+1.0
2,494,979	+				-2.5
2,494,979	+				-0.3
2,494,979	+				-0.9
2,494,979	+				-0.3
2,494,979	+				+0.6
2,494,979	+				-0.9
2,494,986	+				+0.2
2,494,987	-				-0.6
2,494,987	-				-0.1
2,494,987	-				+0.0
2,494,994	-				-0.4
2,495,010	-		GFF2471	0.11	-0.5
2,495,012	+		GFF2471	0.11	+0.3
2,495,019	+		GFF2471	0.11	+0.2
2,495,020	-		GFF2471	0.11	+0.6
2,495,025	+		GFF2471	0.11	+1.5
2,495,030	+		GFF2471	0.12	-2.3
2,495,030	+		GFF2471	0.12	-1.7
2,495,033	-		GFF2471	0.12	+0.1
2,495,033	-		GFF2471	0.12	-0.5
2,495,033	-		GFF2471	0.12	+0.6
2,495,090	+		GFF2471	0.14	-1.1
2,495,090	+		GFF2471	0.14	+0.3
2,495,096	+		GFF2471	0.15	-0.4
2,495,096	+		GFF2471	0.15	-0.5
2,495,096	+		GFF2471	0.15	-0.1
2,495,096	+		GFF2471	0.15	+1.7
2,495,096	+		GFF2471	0.15	-1.0
2,495,096	+		GFF2471	0.15	-2.3
2,495,096	+		GFF2471	0.15	-0.8
2,495,096	+		GFF2471	0.15	-2.0
2,495,096	+		GFF2471	0.15	+0.3
2,495,101	+		GFF2471	0.15	-0.8
2,495,104	-		GFF2471	0.15	-1.1
2,495,104	-		GFF2471	0.15	-0.7
2,495,104	-		GFF2471	0.15	-2.0
2,495,104	-		GFF2471	0.15	-0.6
2,495,104	-		GFF2471	0.15	-0.0
2,495,104	-		GFF2471	0.15	+0.1
2,495,104	-		GFF2471	0.15	-0.1
2,495,104	-		GFF2471	0.15	+0.0
2,495,114	-		GFF2471	0.16	-0.6
2,495,121	+		GFF2471	0.16	-1.8
2,495,129	+		GFF2471	0.16	-0.7
2,495,129	+		GFF2471	0.16	-0.0
2,495,129	+		GFF2471	0.16	-0.5
2,495,134	+		GFF2471	0.16	-0.9
2,495,137	-		GFF2471	0.17	-3.2
2,495,142	-		GFF2471	0.17	-1.8
2,495,142	-		GFF2471	0.17	-0.3