Strain Fitness in Sphingobium sp. HT1-2 around GFF237

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF235 and GFF236 are separated by 372 nucleotidesGFF236 and GFF237 are separated by 72 nucleotidesGFF237 and GFF238 are separated by 169 nucleotides GFF235 - Phage protein (ACLAME 827), at 239,593 to 239,883 GFF235 GFF236 - LSU ribosomal protein L10p (P0), at 240,256 to 240,771 GFF236 GFF237 - LSU ribosomal protein L7p/L12p (P1/P2), at 240,844 to 241,218 GFF237 GFF238 - putative carboxylesterase, at 241,388 to 242,809 GFF238 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1at 239.849 kb on - strand, within GFF235at 239.849 kb on - strand, within GFF235at 239.855 kb on + strandat 239.867 kb on - strandat 239.868 kb on - strandat 239.869 kb on + strandat 239.877 kb on + strandat 239.915 kb on + strandat 239.924 kb on + strandat 239.952 kb on + strandat 239.961 kb on - strandat 241.228 kb on + strandat 241.292 kb on - strandat 241.348 kb on - strandat 241.365 kb on - strandat 241.365 kb on - strandat 241.388 kb on + strandat 241.417 kb on - strandat 241.419 kb on + strandat 241.424 kb on - strandat 241.429 kb on - strandat 241.431 kb on + strandat 241.434 kb on + strandat 241.434 kb on - strandat 241.442 kb on - strandat 241.442 kb on - strandat 241.493 kb on + strandat 241.493 kb on + strandat 241.500 kb on - strandat 241.500 kb on - strandat 241.500 kb on - strandat 241.501 kb on - strandat 241.501 kb on - strandat 241.501 kb on - strandat 241.508 kb on + strandat 241.508 kb on + strandat 241.508 kb on + strandat 241.552 kb on + strand, within GFF238at 241.553 kb on + strand, within GFF238at 241.554 kb on - strand, within GFF238at 241.561 kb on - strand, within GFF238at 241.593 kb on + strand, within GFF238at 241.600 kb on + strand, within GFF238at 241.608 kb on - strand, within GFF238at 241.616 kb on + strand, within GFF238at 241.620 kb on + strand, within GFF238at 241.628 kb on - strand, within GFF238at 241.637 kb on + strand, within GFF238at 241.647 kb on + strand, within GFF238at 241.664 kb on + strand, within GFF238at 241.701 kb on - strand, within GFF238at 241.709 kb on + strand, within GFF238at 241.722 kb on - strand, within GFF238at 241.722 kb on - strand, within GFF238at 241.743 kb on - strand, within GFF238at 241.763 kb on - strand, within GFF238at 241.774 kb on + strand, within GFF238at 241.774 kb on + strand, within GFF238at 241.777 kb on - strand, within GFF238at 241.782 kb on - strand, within GFF238at 241.782 kb on - strand, within GFF238at 241.812 kb on - strand, within GFF238at 241.815 kb on + strand, within GFF238at 241.816 kb on + strand, within GFF238at 241.817 kb on + strand, within GFF238at 241.817 kb on + strand, within GFF238at 241.817 kb on + strand, within GFF238at 241.820 kb on - strand, within GFF238at 241.825 kb on - strand, within GFF238at 241.825 kb on - strand, within GFF238at 241.825 kb on - strand, within GFF238at 241.843 kb on + strand, within GFF238at 241.851 kb on - strand, within GFF238at 241.861 kb on - strand, within GFF238at 241.869 kb on + strand, within GFF238at 241.869 kb on + strand, within GFF238at 241.870 kb on - strand, within GFF238at 241.899 kb on - strand, within GFF238at 241.899 kb on - strand, within GFF238at 241.907 kb on - strand, within GFF238at 241.907 kb on - strand, within GFF238at 241.907 kb on - strand, within GFF238at 241.907 kb on - strand, within GFF238at 241.907 kb on - strand, within GFF238at 241.928 kb on + strand, within GFF238at 241.933 kb on + strand, within GFF238at 241.972 kb on + strand, within GFF238at 241.980 kb on - strand, within GFF238at 241.987 kb on - strand, within GFF238at 241.992 kb on - strand, within GFF238at 241.992 kb on - strand, within GFF238at 241.996 kb on + strand, within GFF238at 242.004 kb on - strand, within GFF238at 242.032 kb on + strand, within GFF238at 242.078 kb on + strand, within GFF238at 242.078 kb on + strand, within GFF238at 242.083 kb on + strand, within GFF238at 242.086 kb on - strand, within GFF238at 242.086 kb on - strand, within GFF238at 242.086 kb on - strand, within GFF238at 242.086 kb on - strand, within GFF238at 242.086 kb on - strand, within GFF238at 242.093 kb on - strand, within GFF238at 242.101 kb on + strand, within GFF238at 242.103 kb on + strand, within GFF238at 242.103 kb on + strand, within GFF238at 242.107 kb on + strand, within GFF238at 242.111 kb on - strand, within GFF238at 242.128 kb on - strand, within GFF238at 242.130 kb on - strand, within GFF238at 242.159 kb on + strand, within GFF238at 242.182 kb on + strand, within GFF238at 242.209 kb on + strand, within GFF238at 242.209 kb on + strand, within GFF238at 242.209 kb on + strand, within GFF238

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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239,849 - GFF235 0.88 -0.9
239,849 - GFF235 0.88 -0.6
239,855 + -0.5
239,867 - +0.0
239,868 - +0.7
239,869 + +0.3
239,877 + -0.3
239,915 + -0.2
239,924 + +0.3
239,952 + -0.1
239,961 - -0.8
241,228 + +0.7
241,292 - +0.7
241,348 - -0.7
241,365 - -0.4
241,365 - -0.2
241,388 + -0.4
241,417 - -2.9
241,419 + -1.7
241,424 - +0.7
241,429 - +0.5
241,431 + -0.9
241,434 + -0.0
241,434 - -0.3
241,442 - +0.1
241,442 - -1.5
241,493 + +1.3
241,493 + -0.9
241,500 - -0.3
241,500 - -1.5
241,500 - +0.3
241,501 - -0.3
241,501 - -0.2
241,501 - -1.1
241,508 + +0.2
241,508 + +0.9
241,508 + -0.4
241,552 + GFF238 0.12 -1.0
241,553 + GFF238 0.12 +1.2
241,554 - GFF238 0.12 -0.3
241,561 - GFF238 0.12 -0.5
241,593 + GFF238 0.14 +0.6
241,600 + GFF238 0.15 -3.7
241,608 - GFF238 0.15 +0.0
241,616 + GFF238 0.16 +1.1
241,620 + GFF238 0.16 +1.6
241,628 - GFF238 0.17 +0.1
241,637 + GFF238 0.18 -0.1
241,647 + GFF238 0.18 +0.0
241,664 + GFF238 0.19 -1.1
241,701 - GFF238 0.22 -1.1
241,709 + GFF238 0.23 +0.6
241,722 - GFF238 0.23 -0.2
241,722 - GFF238 0.23 -0.1
241,743 - GFF238 0.25 +1.6
241,763 - GFF238 0.26 +0.6
241,774 + GFF238 0.27 +0.9
241,774 + GFF238 0.27 -0.4
241,777 - GFF238 0.27 -0.7
241,782 - GFF238 0.28 +0.0
241,782 - GFF238 0.28 -0.7
241,812 - GFF238 0.30 +0.1
241,815 + GFF238 0.30 -0.0
241,816 + GFF238 0.30 -0.1
241,817 + GFF238 0.30 -0.7
241,817 + GFF238 0.30 -0.4
241,817 + GFF238 0.30 -1.8
241,820 - GFF238 0.30 +0.3
241,825 - GFF238 0.31 -0.4
241,825 - GFF238 0.31 -0.7
241,825 - GFF238 0.31 -0.1
241,843 + GFF238 0.32 +1.4
241,851 - GFF238 0.33 -0.7
241,861 - GFF238 0.33 +0.0
241,869 + GFF238 0.34 -1.0
241,869 + GFF238 0.34 -0.2
241,870 - GFF238 0.34 -1.0
241,899 - GFF238 0.36 -0.9
241,899 - GFF238 0.36 +1.6
241,907 - GFF238 0.36 +1.3
241,907 - GFF238 0.36 -1.5
241,907 - GFF238 0.36 +0.1
241,907 - GFF238 0.36 -0.6
241,907 - GFF238 0.36 -1.0
241,928 + GFF238 0.38 -1.5
241,933 + GFF238 0.38 -0.5
241,972 + GFF238 0.41 -0.6
241,980 - GFF238 0.42 -2.6
241,987 - GFF238 0.42 -0.5
241,992 - GFF238 0.42 +0.2
241,992 - GFF238 0.42 -0.5
241,996 + GFF238 0.43 -0.0
242,004 - GFF238 0.43 -0.4
242,032 + GFF238 0.45 -1.7
242,078 + GFF238 0.49 -1.7
242,078 + GFF238 0.49 +0.4
242,083 + GFF238 0.49 -0.3
242,086 - GFF238 0.49 +0.7
242,086 - GFF238 0.49 -0.2
242,086 - GFF238 0.49 +0.7
242,086 - GFF238 0.49 +0.5
242,086 - GFF238 0.49 +0.2
242,093 - GFF238 0.50 -0.9
242,101 + GFF238 0.50 -0.2
242,103 + GFF238 0.50 -0.1
242,103 + GFF238 0.50 +0.2
242,107 + GFF238 0.51 +0.5
242,111 - GFF238 0.51 +0.3
242,128 - GFF238 0.52 -0.1
242,130 - GFF238 0.52 +0.9
242,159 + GFF238 0.54 -0.3
242,182 + GFF238 0.56 +0.3
242,209 + GFF238 0.58 -1.7
242,209 + GFF238 0.58 +0.2
242,209 + GFF238 0.58 +0.3

Or see this region's nucleotide sequence