Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF223 and GFF224 are separated by 154 nucleotides GFF224 and GFF225 are separated by 75 nucleotides GFF225 and GFF226 overlap by 39 nucleotides GFF226 and GFF227 are separated by 44 nucleotides GFF227 and GFF228 are separated by 18 nucleotides
GFF223 - LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-independent, at 228,952 to 229,245
GFF223
GFF224 - hypothetical protein, at 229,400 to 229,621
GFF224
GFF225 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.33), at 229,697 to 230,155
GFF225
GFF226 - hypothetical protein, at 230,117 to 232,030
GFF226
GFF227 - hypothetical protein, at 232,075 to 232,491
GFF227
GFF228 - Transcriptional regulator, AraC family, at 232,510 to 233,406
GFF228
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -2
-1
0
1 at 229.311 kb on + strand at 229.319 kb on - strand at 229.329 kb on + strand at 229.337 kb on - strand at 229.370 kb on + strand at 229.378 kb on - strand at 229.378 kb on - strand at 229.378 kb on - strand at 229.380 kb on + strand at 229.380 kb on + strand at 229.383 kb on + strand at 229.385 kb on + strand at 229.385 kb on + strand at 229.388 kb on + strand at 229.388 kb on - strand at 229.390 kb on + strand at 229.391 kb on - strand at 229.395 kb on + strand at 229.398 kb on - strand at 229.403 kb on - strand at 229.475 kb on + strand, within GFF224 at 229.477 kb on + strand, within GFF224 at 229.477 kb on + strand, within GFF224 at 229.477 kb on + strand, within GFF224 at 229.485 kb on - strand, within GFF224 at 229.485 kb on - strand, within GFF224 at 229.513 kb on + strand, within GFF224 at 229.520 kb on - strand, within GFF224 at 229.540 kb on - strand, within GFF224 at 229.565 kb on - strand, within GFF224 at 229.566 kb on - strand, within GFF224 at 229.566 kb on - strand, within GFF224 at 229.591 kb on + strand, within GFF224 at 229.592 kb on + strand, within GFF224 at 229.615 kb on + strand at 229.618 kb on - strand at 229.623 kb on - strand at 229.623 kb on - strand at 229.679 kb on + strand at 229.679 kb on + strand at 229.679 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.681 kb on + strand at 229.687 kb on - strand at 229.689 kb on - strand at 229.689 kb on - strand at 229.693 kb on + strand at 229.693 kb on + strand at 229.694 kb on + strand at 229.694 kb on + strand at 229.694 kb on + strand at 229.695 kb on - strand at 229.695 kb on - strand at 229.700 kb on + strand at 229.701 kb on - strand at 229.702 kb on - strand at 230.158 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.163 kb on + strand at 230.166 kb on - strand at 230.171 kb on - strand at 230.171 kb on - strand at 230.248 kb on - strand at 231.943 kb on - strand at 232.038 kb on + strand at 232.038 kb on + strand at 232.038 kb on + strand at 232.038 kb on + strand at 232.046 kb on - strand at 232.048 kb on + strand at 232.056 kb on - strand at 232.063 kb on - strand at 232.068 kb on - strand at 232.071 kb on - strand at 232.092 kb on + strand at 232.095 kb on + strand at 232.111 kb on + strand at 232.111 kb on + strand at 232.113 kb on - strand at 232.116 kb on + strand at 232.492 kb on + strand at 232.492 kb on + strand at 232.492 kb on + strand at 232.500 kb on - strand at 232.500 kb on - strand at 232.500 kb on - strand at 232.528 kb on + strand at 232.528 kb on + strand at 232.536 kb on - strand at 232.561 kb on - strand at 232.566 kb on - strand at 232.571 kb on + strand at 232.589 kb on - strand at 232.600 kb on + strand, within GFF228 at 232.600 kb on + strand, within GFF228 at 232.605 kb on - strand, within GFF228 at 232.608 kb on - strand, within GFF228 at 232.608 kb on - strand, within GFF228 at 232.610 kb on + strand, within GFF228 at 232.615 kb on + strand, within GFF228 at 232.615 kb on + strand, within GFF228 at 232.622 kb on - strand, within GFF228 at 232.623 kb on - strand, within GFF228 at 232.623 kb on - strand, within GFF228 at 232.667 kb on - strand, within GFF228 at 232.667 kb on - strand, within GFF228 at 232.688 kb on + strand, within GFF228 at 232.720 kb on + strand, within GFF228 at 232.723 kb on - strand, within GFF228 at 232.780 kb on + strand, within GFF228 at 232.785 kb on + strand, within GFF228 at 232.785 kb on + strand, within GFF228 at 232.793 kb on + strand, within GFF228 at 232.793 kb on - strand, within GFF228 at 232.793 kb on - strand, within GFF228 at 232.801 kb on - strand, within GFF228 at 232.803 kb on + strand, within GFF228 at 232.811 kb on - strand, within GFF228 at 232.817 kb on + strand, within GFF228 at 232.831 kb on - strand, within GFF228 at 232.853 kb on + strand, within GFF228 at 232.861 kb on - strand, within GFF228 at 232.902 kb on - strand, within GFF228 at 232.940 kb on + strand, within GFF228 at 232.950 kb on + strand, within GFF228 at 232.955 kb on + strand, within GFF228 at 232.958 kb on + strand, within GFF228 at 232.958 kb on + strand, within GFF228 at 232.958 kb on + strand, within GFF228 at 232.958 kb on + strand, within GFF228 at 232.958 kb on - strand, within GFF228 at 232.958 kb on - strand, within GFF228 at 232.960 kb on + strand, within GFF228 at 232.963 kb on - strand, within GFF228 at 232.963 kb on - strand, within GFF228 at 232.969 kb on + strand, within GFF228 at 232.969 kb on + strand, within GFF228 at 232.977 kb on + strand, within GFF228 at 232.984 kb on - strand, within GFF228 at 232.997 kb on + strand, within GFF228 at 232.999 kb on + strand, within GFF228 at 233.007 kb on + strand, within GFF228 at 233.007 kb on - strand, within GFF228 at 233.007 kb on - strand, within GFF228 at 233.015 kb on - strand, within GFF228 at 233.015 kb on - strand, within GFF228 at 233.018 kb on + strand, within GFF228 at 233.022 kb on + strand, within GFF228 at 233.022 kb on + strand, within GFF228 at 233.022 kb on + strand, within GFF228 at 233.026 kb on + strand, within GFF228 at 233.026 kb on + strand, within GFF228 at 233.030 kb on - strand, within GFF228 at 233.030 kb on - strand, within GFF228
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 229,311 + -0.7 229,319 - +0.4 229,329 + +0.3 229,337 - -0.1 229,370 + -1.3 229,378 - -0.5 229,378 - -1.8 229,378 - +0.5 229,380 + -0.8 229,380 + +1.3 229,383 + +0.1 229,385 + +1.4 229,385 + -1.2 229,388 + -0.5 229,388 - -0.8 229,390 + +0.5 229,391 - -0.5 229,395 + -0.0 229,398 - +0.0 229,403 - -1.8 229,475 + GFF224 0.34 -0.4 229,477 + GFF224 0.35 -1.3 229,477 + GFF224 0.35 -0.6 229,477 + GFF224 0.35 +0.7 229,485 - GFF224 0.38 +0.1 229,485 - GFF224 0.38 +1.4 229,513 + GFF224 0.51 +1.7 229,520 - GFF224 0.54 +0.3 229,540 - GFF224 0.63 -1.5 229,565 - GFF224 0.74 +0.8 229,566 - GFF224 0.75 -1.7 229,566 - GFF224 0.75 +0.7 229,591 + GFF224 0.86 -0.4 229,592 + GFF224 0.86 -0.2 229,615 + -0.1 229,618 - +0.3 229,623 - -1.0 229,623 - -2.0 229,679 + -0.5 229,679 + -2.7 229,679 + +0.2 229,681 + -0.5 229,681 + -0.2 229,681 + -0.1 229,687 - +0.7 229,689 - -0.1 229,689 - +0.6 229,693 + +0.7 229,693 + +0.5 229,694 + +0.5 229,694 + -1.5 229,694 + -0.3 229,695 - -0.1 229,695 - -1.2 229,700 + -0.0 229,701 - +0.3 229,702 - -0.1 230,158 + +0.5 230,163 + +0.0 230,163 + +0.7 230,163 + -0.1 230,163 + -0.6 230,163 + +0.2 230,163 + +0.2 230,163 + -0.3 230,166 - -2.2 230,171 - +0.2 230,171 - -2.3 230,248 - -0.6 231,943 - -1.3 232,038 + -0.5 232,038 + -0.0 232,038 + -1.0 232,038 + -0.8 232,046 - +0.4 232,048 + -1.0 232,056 - -0.3 232,063 - -0.5 232,068 - -0.3 232,071 - -0.3 232,092 + -0.7 232,095 + +0.1 232,111 + -1.7 232,111 + +0.9 232,113 - -0.3 232,116 + -0.4 232,492 + -2.1 232,492 + -0.6 232,492 + -2.4 232,500 - +0.4 232,500 - -1.6 232,500 - -0.3 232,528 + -0.9 232,528 + +1.3 232,536 - +0.4 232,561 - +0.2 232,566 - -0.1 232,571 + +1.1 232,589 - -0.2 232,600 + GFF228 0.10 +0.3 232,600 + GFF228 0.10 +0.2 232,605 - GFF228 0.11 -0.0 232,608 - GFF228 0.11 +0.4 232,608 - GFF228 0.11 +0.3 232,610 + GFF228 0.11 +0.0 232,615 + GFF228 0.12 +0.9 232,615 + GFF228 0.12 +0.5 232,622 - GFF228 0.12 -0.3 232,623 - GFF228 0.13 +0.2 232,623 - GFF228 0.13 +0.6 232,667 - GFF228 0.18 +0.4 232,667 - GFF228 0.18 +0.7 232,688 + GFF228 0.20 +1.0 232,720 + GFF228 0.23 -1.7 232,723 - GFF228 0.24 -0.0 232,780 + GFF228 0.30 -0.5 232,785 + GFF228 0.31 +1.0 232,785 + GFF228 0.31 +0.8 232,793 + GFF228 0.32 -2.1 232,793 - GFF228 0.32 -0.9 232,793 - GFF228 0.32 -1.2 232,801 - GFF228 0.32 +0.3 232,803 + GFF228 0.33 -0.8 232,811 - GFF228 0.34 -1.3 232,817 + GFF228 0.34 +0.1 232,831 - GFF228 0.36 +0.6 232,853 + GFF228 0.38 +0.7 232,861 - GFF228 0.39 -0.3 232,902 - GFF228 0.44 -2.1 232,940 + GFF228 0.48 -0.6 232,950 + GFF228 0.49 +0.9 232,955 + GFF228 0.50 +0.5 232,958 + GFF228 0.50 -0.0 232,958 + GFF228 0.50 +0.1 232,958 + GFF228 0.50 +1.0 232,958 + GFF228 0.50 +0.4 232,958 - GFF228 0.50 +0.1 232,958 - GFF228 0.50 +0.1 232,960 + GFF228 0.50 -0.2 232,963 - GFF228 0.51 -1.4 232,963 - GFF228 0.51 -0.3 232,969 + GFF228 0.51 +0.5 232,969 + GFF228 0.51 -0.8 232,977 + GFF228 0.52 -1.1 232,984 - GFF228 0.53 +0.5 232,997 + GFF228 0.54 -1.7 232,999 + GFF228 0.55 -0.7 233,007 + GFF228 0.55 -0.2 233,007 - GFF228 0.55 +0.4 233,007 - GFF228 0.55 -0.7 233,015 - GFF228 0.56 +1.6 233,015 - GFF228 0.56 -0.5 233,018 + GFF228 0.57 +0.5 233,022 + GFF228 0.57 -1.0 233,022 + GFF228 0.57 -0.6 233,022 + GFF228 0.57 -0.2 233,026 + GFF228 0.58 -0.2 233,026 + GFF228 0.58 -0.3 233,030 - GFF228 0.58 -0.7 233,030 - GFF228 0.58 -0.7
Or see this region's nucleotide sequence