Strain Fitness in Sphingobium sp. HT1-2 around GFF2247

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,273,004	-		GFF2245	0.85	-1.0
2,273,037	+				-1.4
2,273,055	+				-0.9
2,273,068	-				+0.9
2,273,068	-				+0.0
2,273,082	-				+0.1
2,273,093	-				-1.4
2,273,265	+		GFF2246	0.15	-2.4
2,273,378	+		GFF2246	0.32	+0.5
2,273,386	-		GFF2246	0.34	+1.5
2,273,476	+		GFF2246	0.47	+0.2
2,273,520	-		GFF2246	0.54	+0.6
2,273,522	+		GFF2246	0.54	-0.4
2,273,552	-		GFF2246	0.59	+0.2
2,273,626	+		GFF2246	0.70	-1.0
2,273,626	+		GFF2246	0.70	+0.5
2,273,626	+		GFF2246	0.70	+0.5
2,273,626	+		GFF2246	0.70	-1.0
2,273,626	+		GFF2246	0.70	+0.3
2,273,634	-		GFF2246	0.72	+0.5
2,273,634	-		GFF2246	0.72	+0.0
2,273,634	-		GFF2246	0.72	-0.1
2,273,634	-		GFF2246	0.72	-1.1
2,273,634	-		GFF2246	0.72	-2.0
2,273,634	-		GFF2246	0.72	-0.7
2,273,646	-		GFF2246	0.73	+0.3
2,273,666	+		GFF2246	0.76	-0.6
2,273,667	+		GFF2246	0.77	+0.0
2,273,714	-		GFF2246	0.84	-0.8
2,273,733	+		GFF2246	0.87	-1.5
2,273,733	+		GFF2246	0.87	-1.8
2,273,740	+		GFF2246	0.88	-0.1
2,273,746	+		GFF2246	0.89	+2.3
2,273,746	+		GFF2246	0.89	+0.2
2,273,754	-				+0.1
2,273,777	+				-0.3
2,273,830	-				-0.6
2,273,843	-				-1.5
2,273,863	+				-0.6
2,273,947	+				-0.1
2,273,965	+				+0.1
2,273,965	+				+0.4
2,274,090	-				+0.6
2,274,095	+				-0.0
2,274,103	-				+1.6
2,274,131	-				+0.2
2,274,131	-				-1.4
2,274,145	+		GFF2247	0.11	-0.2
2,274,172	+		GFF2247	0.13	-0.3
2,274,192	+		GFF2247	0.14	-3.0
2,274,227	+		GFF2247	0.16	-0.0
2,274,365	+		GFF2247	0.26	+1.4
2,274,414	-		GFF2247	0.30	+1.0
2,274,478	+		GFF2247	0.34	+0.2
2,274,482	+		GFF2247	0.35	-0.1
2,274,501	+		GFF2247	0.36	+1.4
2,274,501	+		GFF2247	0.36	-1.6
2,274,507	-		GFF2247	0.37	-0.1
2,274,566	+		GFF2247	0.41	+0.4
2,274,590	-		GFF2247	0.43	+0.0
2,274,590	-		GFF2247	0.43	-0.6
2,274,624	+		GFF2247	0.45	-1.4
2,274,642	-		GFF2247	0.46	+1.2
2,274,642	-		GFF2247	0.46	-0.2
2,274,661	-		GFF2247	0.48	+1.1
2,274,661	-		GFF2247	0.48	-1.7
2,274,674	-		GFF2247	0.49	+0.2
2,274,737	-		GFF2247	0.53	+0.8
2,274,757	-		GFF2247	0.54	+0.8
2,274,782	+		GFF2247	0.56	+0.2
2,274,790	-		GFF2247	0.57	+1.1
2,274,790	-		GFF2247	0.57	-1.0
2,274,798	+		GFF2247	0.57	+0.6
2,274,798	+		GFF2247	0.57	+0.0
2,274,803	+		GFF2247	0.58	-0.7
2,274,857	-		GFF2247	0.62	+0.4
2,274,866	+		GFF2247	0.62	+0.4
2,274,866	+		GFF2247	0.62	+0.6
2,274,866	+		GFF2247	0.62	+0.0
2,274,866	+		GFF2247	0.62	+0.9
2,274,866	+		GFF2247	0.62	-0.1
2,274,866	+		GFF2247	0.62	-1.6
2,274,866	+		GFF2247	0.62	+0.5
2,274,866	+		GFF2247	0.62	-0.2
2,274,874	-		GFF2247	0.63	+1.4
2,274,874	-		GFF2247	0.63	+0.6
2,274,874	-		GFF2247	0.63	+0.0
2,274,904	+		GFF2247	0.65	-0.2
2,274,909	+		GFF2247	0.65	-0.0
2,274,912	-		GFF2247	0.66	+0.4
2,274,917	-		GFF2247	0.66	-0.1
2,274,917	-		GFF2247	0.66	+0.1
2,274,982	+		GFF2247	0.71	-1.5
2,274,982	-		GFF2247	0.71	+0.1
2,274,990	-		GFF2247	0.71	-0.7
2,275,002	-		GFF2247	0.72	-2.9
2,275,007	-		GFF2247	0.72	+1.0
2,275,033	-		GFF2247	0.74	+0.7
2,275,039	-		GFF2247	0.75	-0.6
2,275,065	+		GFF2247	0.77	+1.2
2,275,066	-		GFF2247	0.77	+1.0
2,275,073	-		GFF2247	0.77	+0.5
2,275,073	-		GFF2247	0.77	+0.5
2,275,086	-		GFF2247	0.78	-1.0
2,275,163	-		GFF2247	0.84	+1.4
2,275,177	-		GFF2247	0.85	+0.1
2,275,178	+		GFF2247	0.85	-0.9
2,275,178	+		GFF2247	0.85	-1.1
2,275,178	+		GFF2247	0.85	+0.6
2,275,186	-		GFF2247	0.85	+1.8
2,275,186	-		GFF2247	0.85	+0.3
2,275,196	-		GFF2247	0.86	+1.4
2,275,196	-		GFF2247	0.86	+0.5
2,275,232	-		GFF2247	0.89	-2.1
2,275,247	+		GFF2247	0.90	-1.7
2,275,255	+				+0.7
2,275,255	-				-1.5
2,275,255	-				-0.3
2,275,257	+				+0.5
2,275,257	+				-1.4
2,275,265	-				+1.2
2,275,265	-				+0.9
2,275,278	+				+0.1
2,275,286	-				+0.6
2,275,312	+				+0.9
2,275,322	+				+1.1
2,275,322	+				+0.0
2,275,356	+				+0.5
2,275,364	-				-0.2
2,275,400	+				+0.5
2,275,416	+				-0.2
2,275,416	+				+1.0
2,275,424	-				-0.0
2,275,462	+				-0.4
2,275,490	-				+1.3
2,275,499	+				+0.8
2,275,507	-				-1.5
2,275,507	-				+0.2
2,275,507	-				+1.1
2,275,509	+				-1.1
2,275,512	-				+1.4
2,275,512	-				+0.9
2,275,514	+				+0.6
2,275,514	+				-1.2
2,275,514	+				-2.2
2,275,517	-				+0.7
2,275,517	-				+1.2
2,275,517	-				+1.6
2,275,522	-				-0.3
2,275,532	-				-0.3
2,275,532	-				+1.4
2,275,532	-				-0.0
2,275,532	-				+0.5
2,275,532	-				+0.7
2,275,534	+				-0.5
2,275,551	-				-1.5
2,275,568	+				+0.0
2,275,581	-				-0.6
2,275,592	-				+0.2
2,275,614	-				-0.2
2,275,615	+				+0.2
2,275,615	+				-0.0
2,275,623	-				-3.1
2,275,623	-				-0.2
2,275,646	-				+2.2
2,275,648	-				+0.1
2,275,648	-				-0.8
2,275,653	-				-1.0
2,275,655	+				-0.8
2,275,658	-				+0.2
2,275,658	-				-1.4
2,275,658	-				-0.0
2,275,658	-				+2.2
2,275,658	-				+0.7
2,275,658	-				+0.5
2,275,658	-				-0.1
2,275,658	-				-0.0
2,275,666	+				+0.4
2,275,669	-				-0.3
2,275,675	-				+0.4
2,275,712	-				-2.1
2,275,724	+				-0.1
2,275,733	+				+0.8
2,275,736	-				+0.7
2,275,748	+				+1.4
2,275,748	+				+1.3
2,275,756	-				+0.2
2,275,786	+				-1.5
2,275,794	-				+1.3
2,275,810	-				-1.0
2,275,827	+		GFF2248	0.10	+1.3
2,275,888	-		GFF2248	0.12	+0.4
2,275,912	-		GFF2248	0.12	-0.9
2,275,916	-		GFF2248	0.12	+1.1
2,275,916	-		GFF2248	0.12	+0.3
2,275,924	-		GFF2248	0.13	+0.6
2,275,926	+		GFF2248	0.13	+0.6
2,275,926	+		GFF2248	0.13	+2.2
2,275,926	+		GFF2248	0.13	-0.1
2,275,934	-		GFF2248	0.13	+1.3
2,275,934	-		GFF2248	0.13	+0.6
2,276,013	-		GFF2248	0.15	+0.3
2,276,038	+		GFF2248	0.15	+0.4
2,276,038	+		GFF2248	0.15	+0.9
2,276,043	+		GFF2248	0.15	-1.5
2,276,051	-		GFF2248	0.16	+0.7
2,276,058	+		GFF2248	0.16	+0.4
2,276,099	-		GFF2248	0.17	+0.8
2,276,101	+		GFF2248	0.17	-0.9
2,276,104	-		GFF2248	0.17	+0.5
2,276,104	-		GFF2248	0.17	-1.6
2,276,189	+		GFF2248	0.19	+0.1
2,276,220	+		GFF2248	0.20	+0.9
2,276,253	-		GFF2248	0.20	+0.8
2,276,271	+		GFF2248	0.21	+0.6
2,276,272	-		GFF2248	0.21	+0.2
2,276,278	+		GFF2248	0.21	+2.0
2,276,303	+		GFF2248	0.22	+0.2
2,276,305	+		GFF2248	0.22	-0.5
2,276,311	-		GFF2248	0.22	-0.1
2,276,311	-		GFF2248	0.22	-0.5
2,276,311	-		GFF2248	0.22	-0.1
2,276,318	+		GFF2248	0.22	+0.5
2,276,335	+		GFF2248	0.22	+0.6
2,276,335	+		GFF2248	0.22	+0.7
2,276,341	+		GFF2248	0.23	-0.4
2,276,355	+		GFF2248	0.23	+1.2
2,276,388	+		GFF2248	0.24	+0.0
2,276,388	+		GFF2248	0.24	-0.1