Strain Fitness in Sphingobium sp. HT1-2 around GFF2205

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,221,757	-		GFF2203	0.61	-0.4
2,221,778	+		GFF2203	0.62	-0.8
2,221,778	+		GFF2203	0.62	-0.5
2,221,778	+		GFF2203	0.62	-1.3
2,221,783	+		GFF2203	0.62	+0.2
2,221,786	-		GFF2203	0.62	+0.9
2,221,788	+		GFF2203	0.62	-1.3
2,221,788	+		GFF2203	0.62	+0.4
2,221,804	-		GFF2203	0.63	-2.6
2,221,832	+		GFF2203	0.65	+0.4
2,221,832	+		GFF2203	0.65	-1.4
2,221,840	-		GFF2203	0.66	-1.1
2,221,856	+		GFF2203	0.67	-2.3
2,221,864	-		GFF2203	0.67	-0.5
2,221,873	+		GFF2203	0.68	+0.0
2,221,879	-		GFF2203	0.68	+0.4
2,221,894	+		GFF2203	0.69	-0.9
2,221,909	-		GFF2203	0.70	+0.8
2,221,927	+		GFF2203	0.71	-1.4
2,221,974	+		GFF2203	0.74	-0.1
2,221,995	+		GFF2203	0.75	+0.3
2,222,012	-		GFF2203	0.76	-0.5
2,222,014	+		GFF2203	0.76	+0.9
2,222,022	-		GFF2203	0.77	+1.4
2,222,101	+		GFF2203	0.81	+0.2
2,222,114	+		GFF2203	0.82	+0.0
2,222,133	-		GFF2203	0.83	+0.4
2,222,133	-		GFF2203	0.83	+0.4
2,222,166	+		GFF2203	0.85	-2.2
2,222,174	-		GFF2203	0.86	-1.2
2,222,174	-		GFF2203	0.86	+0.2
2,222,198	-		GFF2203	0.87	+0.5
2,222,198	-		GFF2203	0.87	-1.0
2,222,200	+		GFF2203	0.87	+0.4
2,222,200	+		GFF2203	0.87	-0.1
2,222,201	+		GFF2203	0.87	+1.3
2,222,231	-		GFF2203	0.89	-0.2
2,222,238	+		GFF2203	0.90	-0.8
2,222,241	-		GFF2203	0.90	+0.1
2,222,241	-		GFF2203	0.90	+0.2
2,222,241	-		GFF2203	0.90	-0.6
2,222,241	-		GFF2203	0.90	-1.0
2,222,241	-		GFF2203	0.90	+0.2
2,222,241	-		GFF2203	0.90	+0.4
2,222,241	-		GFF2203	0.90	+0.2
2,222,243	+		GFF2203	0.90	-0.8
2,222,243	+		GFF2203	0.90	-0.6
2,222,243	+		GFF2203	0.90	-2.3
2,222,243	+		GFF2203	0.90	-0.1
2,222,243	+		GFF2203	0.90	-1.5
2,222,246	-				-0.1
2,222,248	+				-0.1
2,222,251	-				+0.2
2,222,251	-				+0.0
2,222,251	-				-1.3
2,222,251	-				-0.1
2,222,251	-				-1.2
2,222,251	-				-2.3
2,222,251	-				-0.2
2,222,251	-				+0.7
2,222,251	-				+0.2
2,222,251	-				-0.9
2,222,251	-				-1.7
2,222,251	-				-1.1
2,222,251	-				+1.3
2,222,251	-				+0.2
2,222,251	-				-0.3
2,222,258	+				-0.1
2,222,258	+				+0.7
2,222,258	+				-2.7
2,222,260	+				-2.4
2,222,260	+				-0.0
2,222,266	-				-2.1
2,222,266	-				-1.8
2,222,268	-				-1.1
2,222,268	-				-1.9
2,222,268	-				-0.2
2,222,271	-				+0.0
2,222,331	+				-0.5
2,222,381	+				+0.8
2,222,384	-				+0.4
2,222,394	-				-0.4
2,222,402	+				-0.1
2,222,412	+				+0.2
2,222,443	-		GFF2204	0.10	-2.2
2,222,449	+		GFF2204	0.12	-1.8
2,222,449	+		GFF2204	0.12	+0.4
2,222,452	-		GFF2204	0.13	+0.2
2,222,454	+		GFF2204	0.13	-0.2
2,222,478	-		GFF2204	0.20	+0.0
2,222,488	-		GFF2204	0.23	-0.2
2,222,493	+		GFF2204	0.25	+0.3
2,222,493	+		GFF2204	0.25	+0.4
2,222,507	+		GFF2204	0.28	+0.5
2,222,522	+		GFF2204	0.33	-0.6
2,222,525	-		GFF2204	0.34	-1.0
2,222,535	-		GFF2204	0.36	-0.0
2,222,535	-		GFF2204	0.36	-0.1
2,222,554	-		GFF2204	0.42	-0.0
2,222,564	-		GFF2204	0.45	+1.0
2,222,626	+		GFF2204	0.62	-0.8
2,222,626	+		GFF2204	0.62	-0.8
2,222,632	-		GFF2204	0.64	-1.9
2,222,648	+		GFF2204	0.69	-2.1
2,222,730	+				-0.6
2,222,737	+				-0.4
2,222,738	-				+1.0
2,222,738	-				+0.6
2,222,753	+				-0.9
2,222,760	-				-0.3
2,222,763	+				+0.4
2,222,771	-				-0.3
2,222,778	-		GFF2205	0.12	+0.6
2,222,778	-		GFF2205	0.12	-1.4
2,222,818	+		GFF2205	0.33	-1.1
2,222,838	+		GFF2205	0.44	-0.9
2,222,844	-		GFF2205	0.47	-0.6
2,222,855	+		GFF2205	0.53	-0.4
2,222,863	-		GFF2205	0.57	+0.2
2,222,863	-		GFF2205	0.57	+0.0
2,222,863	-		GFF2205	0.57	+1.6
2,222,870	-		GFF2205	0.60	+1.0
2,222,877	-		GFF2205	0.64	-0.6
2,222,887	-		GFF2205	0.69	-1.2
2,222,899	-		GFF2205	0.76	-1.2
2,222,951	+				-0.9
2,222,959	-				-0.2
2,222,977	-		GFF2206	0.13	-1.7
2,222,999	+		GFF2206	0.21	-0.1
2,222,999	+		GFF2206	0.21	-1.1
2,222,999	+		GFF2206	0.21	-0.4
2,222,999	+		GFF2206	0.21	-0.0
2,222,999	+		GFF2206	0.21	-0.8
2,222,999	+		GFF2206	0.21	+0.7
2,223,004	+		GFF2206	0.23	+0.8
2,223,007	-		GFF2206	0.24	-1.1
2,223,007	-		GFF2206	0.24	+1.2
2,223,007	-		GFF2206	0.24	+0.4
2,223,007	-		GFF2206	0.24	-0.6
2,223,007	-		GFF2206	0.24	-0.9
2,223,007	-		GFF2206	0.24	-0.6
2,223,009	+		GFF2206	0.25	+0.0
2,223,012	-		GFF2206	0.26	+1.0
2,223,012	-		GFF2206	0.26	-0.3
2,223,012	-		GFF2206	0.26	+0.8
2,223,021	-		GFF2206	0.29	-1.8
2,223,022	-		GFF2206	0.29	-0.7
2,223,024	+		GFF2206	0.30	-1.6
2,223,028	+		GFF2206	0.32	-1.9
2,223,035	+		GFF2206	0.34	-1.2
2,223,042	+		GFF2206	0.37	+0.5
2,223,056	+		GFF2206	0.42	-1.3
2,223,061	+		GFF2206	0.44	-1.1
2,223,069	-		GFF2206	0.47	+0.2
2,223,069	-		GFF2206	0.47	-0.7
2,223,069	-		GFF2206	0.47	-0.7
2,223,069	-		GFF2206	0.47	-0.9
2,223,102	-		GFF2206	0.59	-0.7
2,223,102	-		GFF2206	0.59	-1.6
2,223,116	+		GFF2206	0.64	-1.1
2,223,124	-		GFF2206	0.67	-1.4
2,223,140	-		GFF2206	0.73	-0.0
2,223,162	-		GFF2206	0.81	-1.8
2,223,164	+		GFF2206	0.81	-0.0
2,223,164	+		GFF2206	0.81	-0.6
2,223,172	-		GFF2206	0.84	+1.0
2,223,172	-		GFF2206	0.84	+0.7
2,223,174	+		GFF2206	0.85	+1.9
2,223,182	-		GFF2206	0.88	-1.9
2,223,198	+				+0.2
2,223,204	-				-1.0
2,223,204	-				-0.1
2,223,204	-				-2.1
2,223,206	-				-0.1
2,223,220	-				+0.2
2,223,234	+				-2.4
2,223,239	-				+0.1
2,223,244	+		GFF2207	0.12	-0.1
2,223,252	-		GFF2207	0.14	+1.0
2,223,259	-		GFF2207	0.17	-1.0
2,223,294	+		GFF2207	0.29	-0.0
2,223,298	+		GFF2207	0.31	+0.4
2,223,302	-		GFF2207	0.32	-0.4
2,223,302	-		GFF2207	0.32	+1.7
2,223,330	+		GFF2207	0.42	+0.8
2,223,347	-		GFF2207	0.48	-0.5
2,223,393	+		GFF2207	0.64	+0.3
2,223,401	-		GFF2207	0.67	+0.0
2,223,407	+		GFF2207	0.69	-0.8
2,223,437	+		GFF2207	0.79	-0.3
2,223,437	+		GFF2207	0.79	-0.0
2,223,437	+		GFF2207	0.79	-0.7
2,223,444	+		GFF2207	0.82	-0.1
2,223,445	-		GFF2207	0.82	+0.0
2,223,446	-		GFF2207	0.82	+0.7
2,223,472	-				+0.7
2,223,476	+				-0.3
2,223,480	+				-0.8
2,223,505	+				-2.6
2,223,515	-				-0.7
2,223,529	+				-0.8
2,223,535	+				+0.3
2,223,554	+		GFF2208	0.11	-0.2
2,223,562	-		GFF2208	0.12	-0.6
2,223,577	-		GFF2208	0.15	-1.3
2,223,589	+		GFF2208	0.17	+0.5
2,223,589	+		GFF2208	0.17	+0.0
2,223,589	+		GFF2208	0.17	+0.4
2,223,590	+		GFF2208	0.17	-0.5
2,223,597	+		GFF2208	0.18	-0.8
2,223,597	+		GFF2208	0.18	-1.3
2,223,597	+		GFF2208	0.18	-0.2
2,223,597	+		GFF2208	0.18	-0.6
2,223,597	-		GFF2208	0.18	-0.1
2,223,614	+		GFF2208	0.21	+0.0
2,223,624	+		GFF2208	0.23	-1.0
2,223,624	+		GFF2208	0.23	-0.3
2,223,625	+		GFF2208	0.23	+0.2
2,223,629	+		GFF2208	0.24	+0.4
2,223,642	+		GFF2208	0.26	+0.4
2,223,647	+		GFF2208	0.27	-0.0
2,223,652	+		GFF2208	0.28	-1.2
2,223,655	-		GFF2208	0.28	-1.4
2,223,658	+		GFF2208	0.29	-0.7
2,223,660	-		GFF2208	0.29	+0.4
2,223,685	-		GFF2208	0.34	-2.3
2,223,687	+		GFF2208	0.34	+0.4
2,223,703	-		GFF2208	0.37	-0.0
2,223,724	+		GFF2208	0.40	+0.1
2,223,724	+		GFF2208	0.40	-0.8
2,223,735	+		GFF2208	0.42	-0.8
2,223,769	-		GFF2208	0.48	-0.8
2,223,769	-		GFF2208	0.48	-0.7
2,223,812	+		GFF2208	0.56	-0.6
2,223,812	+		GFF2208	0.56	-0.3
2,223,812	+		GFF2208	0.56	-1.1
2,223,812	+		GFF2208	0.56	-1.1
2,223,812	+		GFF2208	0.56	-0.5
2,223,812	+		GFF2208	0.56	-0.0
2,223,812	+		GFF2208	0.56	+0.3
2,223,820	-		GFF2208	0.57	-0.6
2,223,820	-		GFF2208	0.57	+0.2
2,223,820	-		GFF2208	0.57	+0.2
2,223,820	-		GFF2208	0.57	-2.0
2,223,820	-		GFF2208	0.57	-1.2
2,223,820	-		GFF2208	0.57	-0.4
2,223,830	+		GFF2208	0.59	+0.7
2,223,830	-		GFF2208	0.59	-2.0
2,223,834	+		GFF2208	0.59	-0.5
2,223,834	+		GFF2208	0.59	-0.3
2,223,834	+		GFF2208	0.59	-0.1
2,223,837	-		GFF2208	0.60	+0.7
2,223,837	-		GFF2208	0.60	+0.0
2,223,869	+		GFF2208	0.65	+1.3
2,223,869	+		GFF2208	0.65	-0.1
2,223,877	-		GFF2208	0.67	+1.2
2,223,877	-		GFF2208	0.67	+0.4
2,223,877	-		GFF2208	0.67	+0.7
2,223,883	+		GFF2208	0.68	+1.7
2,223,888	+		GFF2208	0.69	-1.3
2,223,888	+		GFF2208	0.69	+1.1
2,223,888	+		GFF2208	0.69	+0.2
2,223,893	+		GFF2208	0.70	-0.4
2,223,894	-		GFF2208	0.70	+0.8
2,223,895	-		GFF2208	0.70	-0.4
2,223,925	-		GFF2208	0.75	-0.2
2,223,940	-		GFF2208	0.78	-1.3