Strain Fitness in Sphingobium sp. HT1-2 around GFF2197

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,215,818	+		GFF2195	0.60	+0.0
2,215,826	+		GFF2195	0.61	+0.7
2,215,826	+		GFF2195	0.61	+1.1
2,215,826	+		GFF2195	0.61	-0.4
2,215,826	+		GFF2195	0.61	+0.5
2,215,834	-		GFF2195	0.63	-2.4
2,215,834	-		GFF2195	0.63	-0.1
2,215,834	-		GFF2195	0.63	+0.0
2,215,861	-		GFF2195	0.67	-0.3
2,215,862	-		GFF2195	0.67	-1.5
2,215,862	-		GFF2195	0.67	-0.0
2,215,872	+		GFF2195	0.69	+0.9
2,215,872	+		GFF2195	0.69	-1.1
2,215,880	-		GFF2195	0.70	-2.0
2,215,880	-		GFF2195	0.70	-1.1
2,215,880	-		GFF2195	0.70	-0.4
2,215,880	-		GFF2195	0.70	+0.5
2,215,880	-		GFF2195	0.70	+1.2
2,215,880	-		GFF2195	0.70	-0.3
2,215,890	+		GFF2195	0.72	-0.9
2,215,890	+		GFF2195	0.72	+0.3
2,215,898	-		GFF2195	0.73	-2.0
2,215,922	+		GFF2195	0.78	-1.1
2,215,925	-		GFF2195	0.78	+0.3
2,215,955	+		GFF2195	0.83	-0.5
2,215,955	+		GFF2195	0.83	+0.6
2,215,955	+		GFF2195	0.83	+0.2
2,215,955	+		GFF2195	0.83	-0.8
2,215,955	+		GFF2195	0.83	-0.3
2,215,962	-		GFF2195	0.84	+0.0
2,215,963	-		GFF2195	0.85	+0.4
2,215,963	-		GFF2195	0.85	-0.8
2,215,963	-		GFF2195	0.85	-2.0
2,215,963	-		GFF2195	0.85	+0.6
2,215,963	-		GFF2195	0.85	+0.8
2,215,991	+		GFF2195	0.89	+0.2
2,215,999	-				-1.5
2,215,999	-				-1.1
2,215,999	-				-0.1
2,216,009	-				-0.5
2,216,010	-				-2.5
2,216,010	-				-0.9
2,216,031	+				-1.0
2,216,037	+				-0.3
2,216,045	-				-2.4
2,216,052	+				-1.0
2,216,052	+				-0.4
2,216,080	+				+0.1
2,216,082	-				-0.2
2,216,087	+		GFF2196	0.11	-1.3
2,216,089	+		GFF2196	0.11	+0.5
2,216,095	-		GFF2196	0.13	+0.0
2,216,103	-		GFF2196	0.16	+0.5
2,216,103	-		GFF2196	0.16	+0.5
2,216,108	-		GFF2196	0.17	+0.5
2,216,115	-		GFF2196	0.19	-0.7
2,216,129	-		GFF2196	0.24	-0.6
2,216,134	+		GFF2196	0.25	-0.2
2,216,134	+		GFF2196	0.25	+0.1
2,216,140	-		GFF2196	0.27	-0.4
2,216,142	-		GFF2196	0.28	-0.4
2,216,144	+		GFF2196	0.29	-1.1
2,216,152	-		GFF2196	0.31	-0.8
2,216,152	-		GFF2196	0.31	-0.0
2,216,152	-		GFF2196	0.31	+0.7
2,216,157	-		GFF2196	0.33	+0.4
2,216,165	+		GFF2196	0.35	-2.5
2,216,165	+		GFF2196	0.35	-0.9
2,216,165	+		GFF2196	0.35	-0.2
2,216,165	+		GFF2196	0.35	-0.8
2,216,165	+		GFF2196	0.35	-0.9
2,216,167	-		GFF2196	0.36	-0.4
2,216,173	-		GFF2196	0.38	+0.2
2,216,173	-		GFF2196	0.38	+0.2
2,216,209	-		GFF2196	0.49	+0.3
2,216,214	+		GFF2196	0.51	-0.2
2,216,214	+		GFF2196	0.51	+0.2
2,216,235	+		GFF2196	0.57	-0.9
2,216,243	-		GFF2196	0.60	+0.9
2,216,243	-		GFF2196	0.60	-0.1
2,216,259	+		GFF2196	0.65	+0.9
2,216,259	+		GFF2196	0.65	+0.2
2,216,259	+		GFF2196	0.65	-0.0
2,216,259	+		GFF2196	0.65	-0.4
2,216,259	+		GFF2196	0.65	-1.1
2,216,267	-		GFF2196	0.67	-2.4
2,216,267	-		GFF2196	0.67	-0.1
2,216,267	-		GFF2196	0.67	-2.9
2,216,269	+		GFF2196	0.68	-0.7
2,216,271	+		GFF2196	0.69	+1.5
2,216,271	+		GFF2196	0.69	-0.4
2,216,271	+		GFF2196	0.69	+0.7
2,216,279	+		GFF2196	0.71	-0.6
2,216,279	+		GFF2196	0.71	-1.5
2,216,279	+		GFF2196	0.71	-0.0
2,216,279	+		GFF2196	0.71	+0.6
2,216,279	+		GFF2196	0.71	-0.1
2,216,279	+		GFF2196	0.71	-2.2
2,216,279	+		GFF2196	0.71	-2.4
2,216,279	+		GFF2196	0.71	-1.2
2,216,279	+		GFF2196	0.71	+0.3
2,216,279	+		GFF2196	0.71	+0.0
2,216,279	+		GFF2196	0.71	-1.0
2,216,279	+		GFF2196	0.71	-0.4
2,216,279	-		GFF2196	0.71	-2.0
2,216,279	-		GFF2196	0.71	+1.0
2,216,284	-		GFF2196	0.73	+1.2
2,216,286	+		GFF2196	0.73	+1.0
2,216,286	-		GFF2196	0.73	+0.2
2,216,287	-		GFF2196	0.74	+0.2
2,216,287	-		GFF2196	0.74	-0.4
2,216,287	-		GFF2196	0.74	-1.9
2,216,287	-		GFF2196	0.74	-1.8
2,216,287	-		GFF2196	0.74	-0.6
2,216,287	-		GFF2196	0.74	-1.3
2,216,319	+		GFF2196	0.84	-0.2
2,216,335	+		GFF2196	0.89	+1.1
2,216,335	+		GFF2196	0.89	+0.0
2,216,352	-				-0.5
2,216,379	+				+0.1
2,216,388	-				-1.8
2,216,393	-				-0.7
2,216,394	+				-0.8
2,216,407	+				+0.2
2,216,407	+				+0.6
2,216,414	+				+0.4
2,216,648	-				-0.8
2,216,656	+				+0.4
2,216,656	+				-0.5
2,216,754	+				-0.1
2,216,761	+				+0.1
2,216,761	+				+0.3
2,216,761	+				+0.3
2,216,763	-				-2.0
2,216,768	-				+0.6
2,216,769	-				-0.4
2,216,769	-				-1.1
2,216,769	-				+0.1
2,216,781	+				+0.7
2,216,795	+				-0.7
2,216,796	-				+0.1
2,216,830	-				+0.1
2,216,830	-				+0.5
2,216,832	+				-1.8
2,216,871	-				-0.4
2,216,904	-				+0.2
2,216,916	+				+0.7
2,216,935	+				+0.2
2,216,937	+				-0.7
2,216,937	+				-1.4
2,216,943	+				-0.9
2,216,945	-				+0.5
2,216,945	-				-2.0
2,216,945	-				+0.3
2,216,957	+				+0.4
2,216,971	+				-0.2
2,216,971	+				-0.2
2,216,971	+				+0.4
2,216,971	+				-1.5
2,216,971	+				+0.2
2,216,976	+				-0.0
2,216,976	+				-2.0
2,216,979	-				+0.3
2,216,983	+				+1.0
2,216,986	-				-0.3
2,216,989	+				+1.6
2,216,994	+				+1.7
2,216,994	+				+1.2
2,216,994	+				+0.0
2,217,002	-		GFF2197	0.10	+0.1
2,217,002	-		GFF2197	0.10	-0.2
2,217,013	+		GFF2197	0.11	-2.0
2,217,029	-		GFF2197	0.11	-0.8
2,217,079	+		GFF2197	0.14	-1.1
2,217,079	+		GFF2197	0.14	-1.7
2,217,086	+		GFF2197	0.14	-0.4
2,217,087	-		GFF2197	0.14	-1.0
2,217,103	+		GFF2197	0.15	-0.2
2,217,117	-		GFF2197	0.16	-0.2
2,217,129	+		GFF2197	0.16	-2.1
2,217,171	+		GFF2197	0.18	+0.0
2,217,190	+		GFF2197	0.19	+0.9
2,217,190	+		GFF2197	0.19	-0.2
2,217,198	-		GFF2197	0.20	-0.5
2,217,203	-		GFF2197	0.20	-1.9
2,217,203	-		GFF2197	0.20	+0.1
2,217,203	-		GFF2197	0.20	-2.1
2,217,228	-		GFF2197	0.21	+0.7
2,217,251	+		GFF2197	0.22	+0.1
2,217,268	+		GFF2197	0.23	-1.1
2,217,276	-		GFF2197	0.23	-0.4
2,217,286	+		GFF2197	0.24	+0.8
2,217,296	+		GFF2197	0.24	-0.9
2,217,309	-		GFF2197	0.25	+0.5
2,217,318	+		GFF2197	0.26	-1.5
2,217,332	+		GFF2197	0.26	-0.3
2,217,340	-		GFF2197	0.27	+0.3
2,217,435	-		GFF2197	0.31	+1.5
2,217,448	+		GFF2197	0.32	+1.3
2,217,492	+		GFF2197	0.34	-1.4
2,217,511	+		GFF2197	0.35	-0.0
2,217,511	+		GFF2197	0.35	-0.2
2,217,511	+		GFF2197	0.35	-0.4
2,217,515	+		GFF2197	0.35	+1.1
2,217,519	-		GFF2197	0.35	-0.7
2,217,519	-		GFF2197	0.35	-0.7
2,217,523	-		GFF2197	0.36	+0.2
2,217,523	-		GFF2197	0.36	+0.8
2,217,523	-		GFF2197	0.36	-1.4
2,217,549	-		GFF2197	0.37	+0.5
2,217,560	-		GFF2197	0.37	-0.9
2,217,577	+		GFF2197	0.38	+0.2
2,217,609	+		GFF2197	0.40	+0.0
2,217,609	+		GFF2197	0.40	-0.3
2,217,609	+		GFF2197	0.40	+0.6
2,217,609	+		GFF2197	0.40	+0.4
2,217,626	+		GFF2197	0.41	-2.6
2,217,627	-		GFF2197	0.41	+0.3
2,217,686	+		GFF2197	0.44	-0.5
2,217,722	-		GFF2197	0.45	+1.3
2,217,731	+		GFF2197	0.46	+0.6
2,217,753	+		GFF2197	0.47	-0.0
2,217,761	-		GFF2197	0.47	+1.5
2,217,778	+		GFF2197	0.48	-0.6
2,217,778	+		GFF2197	0.48	-0.3
2,217,779	-		GFF2197	0.48	-0.0
2,217,781	+		GFF2197	0.48	+0.1
2,217,781	+		GFF2197	0.48	+0.7
2,217,781	+		GFF2197	0.48	-0.4
2,217,786	-		GFF2197	0.48	-0.1
2,217,787	+		GFF2197	0.48	-0.2
2,217,789	-		GFF2197	0.49	-1.2
2,217,795	-		GFF2197	0.49	+0.3
2,217,820	+		GFF2197	0.50	+1.3
2,217,828	-		GFF2197	0.50	-0.1
2,217,847	+		GFF2197	0.51	+0.8
2,217,847	+		GFF2197	0.51	+0.7
2,217,847	+		GFF2197	0.51	+0.2
2,217,847	+		GFF2197	0.51	-0.7
2,217,847	+		GFF2197	0.51	-0.3
2,217,855	-		GFF2197	0.52	-1.7
2,217,855	-		GFF2197	0.52	+0.3
2,217,855	-		GFF2197	0.52	+0.8
2,217,855	-		GFF2197	0.52	+0.4
2,217,855	-		GFF2197	0.52	+0.1
2,217,855	-		GFF2197	0.52	-0.7
2,217,855	-		GFF2197	0.52	-1.4
2,217,868	+		GFF2197	0.52	+0.9
2,217,893	+		GFF2197	0.54	-0.4
2,217,897	+		GFF2197	0.54	-0.8
2,217,897	+		GFF2197	0.54	+0.6
2,217,897	+		GFF2197	0.54	+0.9
2,217,897	+		GFF2197	0.54	+0.3
2,217,905	-		GFF2197	0.54	-1.5
2,217,905	-		GFF2197	0.54	-0.5
2,217,905	-		GFF2197	0.54	+0.5
2,217,905	-		GFF2197	0.54	+0.8
2,217,905	-		GFF2197	0.54	-0.9
2,217,905	-		GFF2197	0.54	+0.5
2,217,905	-		GFF2197	0.54	+0.3
2,217,905	-		GFF2197	0.54	-2.8
2,217,905	-		GFF2197	0.54	-0.5
2,217,908	+		GFF2197	0.54	-0.4
2,217,908	+		GFF2197	0.54	-0.6
2,217,914	-		GFF2197	0.55	-0.5
2,217,916	-		GFF2197	0.55	-0.1
2,217,918	+		GFF2197	0.55	+0.6
2,217,920	-		GFF2197	0.55	-0.5
2,217,923	+		GFF2197	0.55	-1.4
2,217,927	+		GFF2197	0.55	-0.6
2,217,930	-		GFF2197	0.55	+0.9
2,217,931	-		GFF2197	0.56	+1.9
2,217,950	+		GFF2197	0.56	+0.5
2,217,978	+		GFF2197	0.58	-0.2
2,217,996	-		GFF2197	0.59	+0.4
2,217,996	-		GFF2197	0.59	-2.0
2,218,003	-		GFF2197	0.59	+0.7
2,218,011	+		GFF2197	0.59	-0.5
2,218,019	-		GFF2197	0.60	+0.0
2,218,055	+		GFF2197	0.62	+0.7
2,218,065	+		GFF2197	0.62	+0.5
2,218,067	+		GFF2197	0.62	+0.5
2,218,080	-		GFF2197	0.63	-0.9
2,218,092	-		GFF2197	0.63	+0.2
2,218,101	+		GFF2197	0.64	+0.8
2,218,109	-		GFF2197	0.64	-0.4
2,218,109	-		GFF2197	0.64	-0.2
2,218,129	+		GFF2197	0.65	+0.6
2,218,129	+		GFF2197	0.65	-0.1
2,218,134	+		GFF2197	0.65	+0.3
2,218,134	+		GFF2197	0.65	-2.5
2,218,134	+		GFF2197	0.65	+0.2
2,218,134	+		GFF2197	0.65	+0.5
2,218,134	+		GFF2197	0.65	-1.2
2,218,134	+		GFF2197	0.65	-0.0
2,218,134	+		GFF2197	0.65	+0.3
2,218,134	+		GFF2197	0.65	-1.6
2,218,134	+		GFF2197	0.65	-1.5
2,218,134	+		GFF2197	0.65	+0.1
2,218,137	-		GFF2197	0.66	-0.1
2,218,142	-		GFF2197	0.66	-0.4
2,218,142	-		GFF2197	0.66	-0.5
2,218,142	-		GFF2197	0.66	-0.1
2,218,155	+		GFF2197	0.66	+0.3
2,218,157	+		GFF2197	0.67	+0.6
2,218,158	-		GFF2197	0.67	-0.2
2,218,162	+		GFF2197	0.67	+1.8
2,218,170	-		GFF2197	0.67	-1.7
2,218,184	+		GFF2197	0.68	-1.5
2,218,196	+		GFF2197	0.68	-1.2
2,218,204	-		GFF2197	0.69	-1.7
2,218,235	-		GFF2197	0.70	-0.9
2,218,238	-		GFF2197	0.71	+0.1
2,218,250	+		GFF2197	0.71	-0.1
2,218,250	+		GFF2197	0.71	-0.7
2,218,250	+		GFF2197	0.71	+1.3
2,218,253	-		GFF2197	0.71	-1.9
2,218,265	+		GFF2197	0.72	-1.4
2,218,266	-		GFF2197	0.72	+0.1
2,218,271	-		GFF2197	0.72	+0.5
2,218,385	+		GFF2197	0.78	+0.2
2,218,393	-		GFF2197	0.78	-0.8
2,218,393	-		GFF2197	0.78	+0.0
2,218,399	-		GFF2197	0.78	+0.8
2,218,399	-		GFF2197	0.78	-1.6
2,218,399	-		GFF2197	0.78	+1.0
2,218,399	-		GFF2197	0.78	-0.6
2,218,404	+		GFF2197	0.79	-0.4
2,218,412	+		GFF2197	0.79	-0.1
2,218,412	+		GFF2197	0.79	+1.0
2,218,418	+		GFF2197	0.79	+1.3
2,218,420	-		GFF2197	0.79	+0.4
2,218,436	-		GFF2197	0.80	-0.3
2,218,440	-		GFF2197	0.80	-0.2
2,218,447	-		GFF2197	0.81	-0.3
2,218,482	+		GFF2197	0.82	-1.7
2,218,487	+		GFF2197	0.83	-1.0
2,218,515	+		GFF2197	0.84	+0.8
2,218,521	-		GFF2197	0.84	-0.5
2,218,522	-		GFF2197	0.84	+0.3
2,218,525	+		GFF2197	0.85	-0.4
2,218,525	+		GFF2197	0.85	+0.1
2,218,525	-		GFF2197	0.85	+0.1
2,218,562	-		GFF2197	0.86	-0.2
2,218,590	-		GFF2197	0.88	+0.7
2,218,688	+				+0.2
2,218,688	+				-1.1
2,218,692	-				+1.0
2,218,693	+				+0.6
2,218,696	-				-0.7
2,218,698	+				-0.3
2,218,698	+				-0.5
2,218,706	-				-0.8
2,218,711	-				+0.9
2,218,721	+				+0.6
2,218,721	+				+0.4
2,218,721	+				+1.1
2,218,731	+				-0.2
2,218,731	+				-0.3
2,218,731	+				-0.2
2,218,804	+				-0.8
2,218,806	+				+0.2
2,218,812	-				-1.1
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2,218,816	-				-0.4
2,218,826	-				-0.6
2,218,832	+				-0.0
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2,219,771	-		GFF2200	0.63	-2.5
2,219,771	-		GFF2200	0.63	-0.2
2,219,802	+		GFF2200	0.68	-0.6
2,219,818	+		GFF2200	0.71	-0.6
2,219,828	-		GFF2200	0.73	-0.1