Strain Fitness in Sphingobium sp. HT1-2 around GFF2183

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,199,188	+				-0.3
2,199,193	-				-1.2
2,199,205	+				+0.2
2,199,205	+				+0.6
2,199,213	-				-0.2
2,199,246	+				-0.5
2,199,246	+				+0.0
2,199,254	-				+0.6
2,199,265	+				-1.2
2,199,273	+				-0.2
2,199,274	+				+0.2
2,199,282	+				+0.3
2,199,285	-				+1.3
2,199,304	+				-0.4
2,199,306	+				-0.8
2,199,306	+				-0.2
2,199,306	+				-1.3
2,199,312	-				+0.2
2,199,314	-				-0.2
2,199,325	+				-0.6
2,199,325	+				-0.3
2,199,327	+				+1.0
2,199,327	+				-0.5
2,199,333	+				+0.3
2,199,351	-				-0.1
2,199,371	-				-0.6
2,199,381	-				+0.4
2,199,437	-		GFF2182	0.12	-0.5
2,199,447	+		GFF2182	0.14	-0.0
2,199,447	+		GFF2182	0.14	-1.4
2,199,447	+		GFF2182	0.14	-0.5
2,199,450	-		GFF2182	0.14	+1.3
2,199,455	-		GFF2182	0.14	-1.2
2,199,455	-		GFF2182	0.14	+0.2
2,199,455	-		GFF2182	0.14	+1.8
2,199,493	-		GFF2182	0.19	-0.6
2,199,512	-		GFF2182	0.21	+0.9
2,199,520	-		GFF2182	0.22	-0.2
2,199,531	+		GFF2182	0.24	-0.8
2,199,539	-		GFF2182	0.25	+1.0
2,199,563	+		GFF2182	0.28	+0.8
2,199,565	-		GFF2182	0.28	-1.1
2,199,584	-		GFF2182	0.30	+0.2
2,199,604	+		GFF2182	0.32	-0.9
2,199,635	+		GFF2182	0.36	-1.2
2,199,670	-		GFF2182	0.40	-1.7
2,199,675	-		GFF2182	0.41	-0.4
2,199,681	+		GFF2182	0.42	-0.2
2,199,681	+		GFF2182	0.42	-0.4
2,199,681	+		GFF2182	0.42	-1.4
2,199,689	-		GFF2182	0.43	-2.5
2,199,689	-		GFF2182	0.43	-1.7
2,199,689	-		GFF2182	0.43	+2.1
2,199,689	-		GFF2182	0.43	-1.8
2,199,689	-		GFF2182	0.43	-0.2
2,199,689	-		GFF2182	0.43	-0.9
2,199,712	-		GFF2182	0.46	-0.0
2,199,722	+		GFF2182	0.47	+0.1
2,199,722	+		GFF2182	0.47	+0.2
2,199,722	+		GFF2182	0.47	-0.5
2,199,725	-		GFF2182	0.47	+0.0
2,199,725	-		GFF2182	0.47	-0.0
2,199,725	-		GFF2182	0.47	-0.8
2,199,725	-		GFF2182	0.47	-0.0
2,199,730	+		GFF2182	0.48	-0.7
2,199,730	-		GFF2182	0.48	+0.3
2,199,732	-		GFF2182	0.48	-0.4
2,199,738	-		GFF2182	0.49	-0.4
2,199,738	-		GFF2182	0.49	-0.4
2,199,738	-		GFF2182	0.49	-0.4
2,199,740	+		GFF2182	0.49	-0.9
2,199,766	+		GFF2182	0.52	-0.0
2,199,772	+		GFF2182	0.53	-0.5
2,199,778	+		GFF2182	0.54	+0.8
2,199,782	-		GFF2182	0.54	-0.0
2,199,782	-		GFF2182	0.54	-0.4
2,199,788	+		GFF2182	0.55	-1.7
2,199,822	-		GFF2182	0.59	+0.5
2,199,827	-		GFF2182	0.59	-0.2
2,199,836	+		GFF2182	0.61	-2.3
2,199,844	-		GFF2182	0.61	+0.3
2,199,844	-		GFF2182	0.61	+1.3
2,199,844	-		GFF2182	0.61	-0.6
2,199,868	+		GFF2182	0.64	+0.3
2,199,876	-		GFF2182	0.65	-2.3
2,199,876	-		GFF2182	0.65	-0.3
2,199,879	+		GFF2182	0.66	-0.3
2,199,884	+		GFF2182	0.66	-1.0
2,199,887	-		GFF2182	0.67	+0.5
2,199,889	+		GFF2182	0.67	+0.4
2,199,897	-		GFF2182	0.68	+0.3
2,199,897	-		GFF2182	0.68	+0.0
2,199,907	+		GFF2182	0.69	-0.3
2,199,932	+		GFF2182	0.72	+0.7
2,199,932	+		GFF2182	0.72	+0.6
2,199,932	+		GFF2182	0.72	+0.5
2,199,932	+		GFF2182	0.72	-0.5
2,199,932	+		GFF2182	0.72	+0.2
2,199,932	+		GFF2182	0.72	-0.2
2,199,932	+		GFF2182	0.72	-0.4
2,199,932	+		GFF2182	0.72	-1.2
2,199,932	+		GFF2182	0.72	-1.9
2,199,932	+		GFF2182	0.72	-2.5
2,199,932	+		GFF2182	0.72	+1.0
2,199,932	+		GFF2182	0.72	-1.5
2,199,932	+		GFF2182	0.72	-0.4
2,199,932	+		GFF2182	0.72	+0.0
2,199,932	+		GFF2182	0.72	-0.4
2,199,932	+		GFF2182	0.72	-0.3
2,199,932	+		GFF2182	0.72	-2.5
2,199,932	+		GFF2182	0.72	-0.2
2,199,932	+		GFF2182	0.72	-1.3
2,199,932	+		GFF2182	0.72	-0.8
2,199,932	+		GFF2182	0.72	+0.2
2,199,940	-		GFF2182	0.73	-0.8
2,199,940	-		GFF2182	0.73	-0.8
2,199,940	-		GFF2182	0.73	+0.3
2,199,940	-		GFF2182	0.73	-0.6
2,199,940	-		GFF2182	0.73	+0.5
2,199,940	-		GFF2182	0.73	+0.0
2,199,940	-		GFF2182	0.73	-0.0
2,199,940	-		GFF2182	0.73	+0.2
2,199,940	-		GFF2182	0.73	+1.2
2,199,940	-		GFF2182	0.73	-2.2
2,199,940	-		GFF2182	0.73	-0.1
2,199,940	-		GFF2182	0.73	+0.0
2,199,940	-		GFF2182	0.73	-1.7
2,199,940	-		GFF2182	0.73	+0.9
2,199,940	-		GFF2182	0.73	-1.7
2,199,940	-		GFF2182	0.73	+0.3
2,199,940	-		GFF2182	0.73	+0.1
2,199,945	-		GFF2182	0.74	-0.9
2,199,977	-		GFF2182	0.78	-2.0
2,199,980	+		GFF2182	0.78	-0.5
2,199,981	+		GFF2182	0.78	-1.4
2,199,982	-		GFF2182	0.78	-0.3
2,199,988	+		GFF2182	0.79	-1.7
2,199,999	+		GFF2182	0.80	-0.0
2,200,011	-		GFF2182	0.82	+0.1
2,200,037	+		GFF2182	0.85	+0.2
2,200,059	+		GFF2182	0.87	-1.4
2,200,059	+		GFF2182	0.87	-0.4
2,200,067	-		GFF2182	0.88	+0.0
2,200,112	+				-1.0
2,200,112	+				-0.5
2,200,112	+				+0.8
2,200,112	+				-0.8
2,200,112	+				+0.5
2,200,119	-				-2.0
2,200,120	-				+0.4
2,200,120	-				-1.4
2,200,120	-				-1.0
2,200,120	-				+0.2
2,200,120	-				-0.5
2,200,120	-				-0.3
2,200,120	-				-1.0
2,200,131	+				-0.2
2,200,134	-				-0.2
2,200,134	-				-1.3
2,200,136	+				+0.4
2,200,139	-				-0.1
2,200,147	+				-0.4
2,200,155	-				-1.2
2,200,155	-				-0.6
2,200,155	-				+0.6
2,200,180	+				-1.7
2,200,180	+				+1.0
2,200,180	+				-0.3
2,200,180	+				-0.0
2,200,188	-				+0.2
2,200,188	-				+0.0
2,200,208	+				+1.1
2,200,215	+				+0.2
2,200,222	-				-0.4
2,200,241	+				+0.5
2,200,244	+				-1.2
2,200,244	+				-0.3
2,200,252	-				-0.1
2,200,252	-				+0.4
2,200,263	+				-1.8
2,200,263	+				-1.1
2,200,271	-		GFF2183	0.10	-0.0
2,200,271	-		GFF2183	0.10	-0.0
2,200,276	-		GFF2183	0.11	-0.2
2,200,288	+		GFF2183	0.12	-2.8
2,200,305	+		GFF2183	0.14	+0.7
2,200,325	+		GFF2183	0.16	-2.5
2,200,325	+		GFF2183	0.16	-0.5
2,200,332	-		GFF2183	0.16	-0.6
2,200,332	-		GFF2183	0.16	-0.1
2,200,333	-		GFF2183	0.16	-1.1
2,200,358	+		GFF2183	0.19	-1.0
2,200,366	-		GFF2183	0.19	+1.0
2,200,366	-		GFF2183	0.19	-0.3
2,200,367	-		GFF2183	0.20	-2.4
2,200,376	+		GFF2183	0.20	+0.1
2,200,376	+		GFF2183	0.20	+0.1
2,200,384	-		GFF2183	0.21	+0.4
2,200,393	+		GFF2183	0.22	-2.0
2,200,393	+		GFF2183	0.22	+0.7
2,200,393	+		GFF2183	0.22	-1.9
2,200,393	+		GFF2183	0.22	+1.6
2,200,401	-		GFF2183	0.23	-0.8
2,200,401	-		GFF2183	0.23	-0.8
2,200,413	+		GFF2183	0.24	-0.5
2,200,440	+		GFF2183	0.27	+1.0
2,200,440	+		GFF2183	0.27	-0.5
2,200,440	+		GFF2183	0.27	-0.0
2,200,450	-		GFF2183	0.28	-0.4
2,200,458	-		GFF2183	0.28	+1.0
2,200,460	+		GFF2183	0.29	-0.7
2,200,460	+		GFF2183	0.29	-1.5
2,200,468	-		GFF2183	0.29	-1.0
2,200,476	+		GFF2183	0.30	+0.3
2,200,476	+		GFF2183	0.30	+1.5
2,200,484	-		GFF2183	0.31	-0.6
2,200,487	+		GFF2183	0.31	-0.3
2,200,494	-		GFF2183	0.32	-0.1
2,200,494	-		GFF2183	0.32	-0.1
2,200,494	-		GFF2183	0.32	-0.3
2,200,505	-		GFF2183	0.33	+0.2
2,200,505	-		GFF2183	0.33	-0.3
2,200,507	+		GFF2183	0.33	-0.2
2,200,508	+		GFF2183	0.33	+0.2
2,200,515	-		GFF2183	0.34	+0.8
2,200,515	-		GFF2183	0.34	-0.3
2,200,516	+		GFF2183	0.34	-0.6
2,200,523	-		GFF2183	0.35	-1.4
2,200,529	-		GFF2183	0.35	-0.5
2,200,569	+		GFF2183	0.39	-2.7
2,200,569	+		GFF2183	0.39	-0.9
2,200,569	+		GFF2183	0.39	-0.0
2,200,577	-		GFF2183	0.40	-0.6
2,200,577	-		GFF2183	0.40	+0.8
2,200,577	-		GFF2183	0.40	-1.4
2,200,577	-		GFF2183	0.40	-1.6
2,200,610	-		GFF2183	0.43	-0.8
2,200,624	+		GFF2183	0.44	-0.2
2,200,632	-		GFF2183	0.45	-0.7
2,200,656	+		GFF2183	0.48	-0.7
2,200,672	-		GFF2183	0.49	+0.8
2,200,694	-		GFF2183	0.51	-0.3
2,200,703	+		GFF2183	0.52	+0.6
2,200,706	+		GFF2183	0.52	-0.0
2,200,716	-		GFF2183	0.53	+0.6
2,200,716	-		GFF2183	0.53	+0.2
2,200,764	+		GFF2183	0.58	+1.0
2,200,766	-		GFF2183	0.58	+1.0
2,200,771	+		GFF2183	0.59	-0.4
2,200,772	-		GFF2183	0.59	+0.8
2,200,779	+		GFF2183	0.59	+0.8
2,200,787	-		GFF2183	0.60	-1.0
2,200,787	-		GFF2183	0.60	-0.2
2,200,787	-		GFF2183	0.60	+0.0
2,200,834	+		GFF2183	0.65	-0.0
2,200,834	-		GFF2183	0.65	+0.1
2,200,834	-		GFF2183	0.65	+0.7
2,200,836	+		GFF2183	0.65	-0.4
2,200,836	+		GFF2183	0.65	+0.3
2,200,836	+		GFF2183	0.65	-0.2
2,200,836	+		GFF2183	0.65	+0.7
2,200,836	+		GFF2183	0.65	-1.7
2,200,839	-		GFF2183	0.65	+1.0
2,200,841	+		GFF2183	0.66	+0.7
2,200,842	-		GFF2183	0.66	-1.2
2,200,844	-		GFF2183	0.66	+0.9
2,200,844	-		GFF2183	0.66	-0.1
2,200,849	-		GFF2183	0.66	-0.6
2,200,849	-		GFF2183	0.66	-0.2
2,200,852	-		GFF2183	0.67	+0.1
2,200,889	-		GFF2183	0.70	-1.6
2,200,902	+		GFF2183	0.71	+0.1
2,200,908	+		GFF2183	0.72	-0.6
2,200,908	+		GFF2183	0.72	-0.1
2,200,916	+		GFF2183	0.73	+1.0
2,200,916	-		GFF2183	0.73	-1.8
2,200,916	-		GFF2183	0.73	+0.9
2,200,916	-		GFF2183	0.73	+0.2
2,200,916	-		GFF2183	0.73	-0.4
2,200,925	+		GFF2183	0.74	-0.9
2,200,943	+		GFF2183	0.75	-1.2
2,200,943	+		GFF2183	0.75	+0.5
2,200,943	+		GFF2183	0.75	-0.0
2,200,945	+		GFF2183	0.76	-1.8
2,200,951	-		GFF2183	0.76	+0.9
2,200,951	-		GFF2183	0.76	+0.9
2,200,951	-		GFF2183	0.76	+0.6
2,200,953	-		GFF2183	0.76	-1.2
2,200,953	-		GFF2183	0.76	-2.0
2,200,968	-		GFF2183	0.78	-0.7
2,201,030	+		GFF2183	0.84	-1.5
2,201,030	+		GFF2183	0.84	-1.2
2,201,030	+		GFF2183	0.84	-1.0
2,201,030	+		GFF2183	0.84	-0.7
2,201,040	+		GFF2183	0.85	-1.5
2,201,047	+		GFF2183	0.85	-1.5
2,201,052	+		GFF2183	0.86	-0.9
2,201,052	+		GFF2183	0.86	-0.0
2,201,055	-		GFF2183	0.86	+0.3
2,201,060	-		GFF2183	0.87	-0.8
2,201,074	+		GFF2183	0.88	-0.2
2,201,074	+		GFF2183	0.88	+0.5
2,201,074	+		GFF2183	0.88	+0.6
2,201,074	+		GFF2183	0.88	-1.0
2,201,074	+		GFF2183	0.88	+0.0
2,201,074	+		GFF2183	0.88	+0.8
2,201,074	+		GFF2183	0.88	+0.4
2,201,074	+		GFF2183	0.88	+0.1
2,201,074	+		GFF2183	0.88	+0.4
2,201,079	+		GFF2183	0.89	+0.2
2,201,082	-		GFF2183	0.89	-1.8
2,201,082	-		GFF2183	0.89	-1.8
2,201,082	-		GFF2183	0.89	-2.4
2,201,082	-		GFF2183	0.89	+0.2
2,201,082	-		GFF2183	0.89	-0.8
2,201,082	-		GFF2183	0.89	+0.1
2,201,082	-		GFF2183	0.89	-1.0
2,201,082	-		GFF2183	0.89	+0.6
2,201,082	-		GFF2183	0.89	+0.4
2,201,082	-		GFF2183	0.89	-0.2
2,201,097	-				+0.4
2,201,099	+				+0.7
2,201,099	+				-0.2
2,201,107	-				+0.4
2,201,107	-				+1.1
2,201,107	-				-0.0
2,201,113	-				-0.4
2,201,113	-				-0.9
2,201,123	+				+0.2
2,201,127	-				-0.1
2,201,127	-				-3.0
2,201,169	+				-2.4
2,201,185	+				-0.2
2,201,190	+				-0.5
2,201,190	+				+0.2
2,201,190	+				+0.0
2,201,193	-				+1.0
2,201,198	-				-0.6
2,201,198	-				-0.7
2,201,216	-				-1.5
2,201,240	-				+1.1
2,201,250	+				-1.8
2,201,257	+				-0.6
2,201,257	+				-1.2
2,201,273	+		GFF2184	0.11	-1.0
2,201,331	+		GFF2184	0.25	-3.3
2,201,351	+		GFF2184	0.29	-0.9
2,201,359	-		GFF2184	0.31	-1.4
2,201,359	-		GFF2184	0.31	+0.9
2,201,361	+		GFF2184	0.32	+1.1
2,201,361	-		GFF2184	0.32	-0.8
2,201,366	+		GFF2184	0.33	-0.1
2,201,374	-		GFF2184	0.35	+1.5
2,201,388	-		GFF2184	0.38	-0.2
2,201,393	-		GFF2184	0.39	-0.5
2,201,412	-		GFF2184	0.44	-0.6
2,201,412	-		GFF2184	0.44	+0.2
2,201,449	+		GFF2184	0.52	+0.2
2,201,449	+		GFF2184	0.52	+0.7
2,201,485	+		GFF2184	0.60	+0.8
2,201,486	+		GFF2184	0.61	+1.6
2,201,486	-		GFF2184	0.61	-1.5
2,201,494	-		GFF2184	0.62	-0.9
2,201,526	+		GFF2184	0.70	+0.3
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2,201,549	+		GFF2184	0.75	-0.1
2,201,549	+		GFF2184	0.75	+0.5
2,201,555	-		GFF2184	0.77	-0.3
2,201,557	-		GFF2184	0.77	+1.0
2,201,564	+		GFF2184	0.79	+0.7
2,201,572	-		GFF2184	0.81	+0.3
2,201,574	+		GFF2184	0.81	-0.2
2,201,582	-		GFF2184	0.83	-0.7
2,201,582	-		GFF2184	0.83	-1.0
2,201,582	-		GFF2184	0.83	-0.1
2,201,582	-		GFF2184	0.83	+0.0
2,201,586	+		GFF2184	0.84	+0.3
2,201,591	+		GFF2184	0.85	-0.5
2,201,591	+		GFF2184	0.85	-0.7
2,201,591	+		GFF2184	0.85	-0.2
2,201,591	+		GFF2184	0.85	+0.1
2,201,596	+		GFF2184	0.86	+0.7
2,201,596	+		GFF2184	0.86	-0.0
2,201,596	+		GFF2184	0.86	+0.3
2,201,599	-		GFF2184	0.87	-0.3
2,201,599	-		GFF2184	0.87	+0.3
2,201,604	-		GFF2184	0.88	-0.0
2,201,604	-		GFF2184	0.88	-1.1
2,201,604	-		GFF2184	0.88	-0.5
2,201,604	-		GFF2184	0.88	-2.0
2,201,604	-		GFF2184	0.88	+0.2
2,201,604	-		GFF2184	0.88	-0.5
2,201,645	-				-1.0
2,201,657	-				-2.0
2,201,661	+				+0.2
2,201,664	-				-0.9
2,201,669	-				-0.0
2,201,669	-				-0.5
2,201,669	-				-0.2
2,201,717	+		GFF2185	0.14	+1.6
2,201,717	+		GFF2185	0.14	-1.1
2,201,729	+		GFF2185	0.16	+0.8
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2,201,737	-		GFF2185	0.18	-0.8
2,201,750	-		GFF2185	0.21	+0.8
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2,201,767	+		GFF2185	0.25	+2.1
2,201,768	+		GFF2185	0.25	+0.1
2,201,780	+		GFF2185	0.27	-1.9
2,201,788	-		GFF2185	0.29	+0.1
2,201,851	-		GFF2185	0.43	-0.1
2,201,884	-		GFF2185	0.50	-0.3
2,201,886	+		GFF2185	0.50	-1.5
2,201,890	-		GFF2185	0.51	+0.1
2,201,903	+		GFF2185	0.54	+0.2
2,201,929	-		GFF2185	0.59	-0.6
2,201,935	-		GFF2185	0.60	+1.7
2,201,952	+		GFF2185	0.64	-0.5
2,201,969	-		GFF2185	0.68	+1.0
2,201,972	+		GFF2185	0.68	-1.0
2,201,986	-		GFF2185	0.71	-1.9
2,201,986	-		GFF2185	0.71	-0.5
2,201,986	-		GFF2185	0.71	-1.0
2,201,986	-		GFF2185	0.71	-0.6
2,201,986	-		GFF2185	0.71	-1.3
2,202,015	+		GFF2185	0.78	+0.1
2,202,015	+		GFF2185	0.78	-0.5
2,202,015	+		GFF2185	0.78	-1.1
2,202,015	+		GFF2185	0.78	-1.1
2,202,018	+		GFF2185	0.78	-0.4
2,202,020	+		GFF2185	0.79	-1.3
2,202,020	+		GFF2185	0.79	+0.0
2,202,023	-		GFF2185	0.79	-0.4
2,202,023	-		GFF2185	0.79	+0.2
2,202,023	-		GFF2185	0.79	+1.7
2,202,028	-		GFF2185	0.80	-0.2
2,202,028	-		GFF2185	0.80	+0.3
2,202,028	-		GFF2185	0.80	+0.4
2,202,033	-		GFF2185	0.81	-0.1
2,202,035	+		GFF2185	0.82	-1.3
2,202,076	-				-0.2
2,202,089	+				+0.9
2,202,094	+				-0.3
2,202,097	-				+0.1
2,202,097	-				+0.5
2,202,097	-				-0.2
2,202,097	-				-1.5
2,202,099	+				-0.2
2,202,099	+				-0.8
2,202,112	-				+0.8
2,202,124	-				+1.3
2,202,126	-				-2.7
2,202,131	-				+0.7
2,202,132	+				-0.1
2,202,140	+				+0.3
2,202,140	+				-1.3
2,202,147	+				+0.9
2,202,147	+				-0.1
2,202,147	+				+0.1
2,202,160	-				-1.4
2,202,163	+				-0.6
2,202,194	-				-0.4